MD15G1176900.v1.1

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011506
Physical Location & Seq
Forward (+)
13849771 .. 13852599
2829 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1176900.v1.1.491

Sequence Viewer

Length: 687 bp
ATGGGGTTGGAGAGCACCTCTCGACGCGGCGGCGGGATTGAAAACAGCAGCAAGGGCTACGAGACCCAGGTGGTGTTGAATGTTTACGACCTCACCCCCCTCAATAATTACACGGTCTGGTTCGGTCTCGGAATCTTTCACTCCGGAATTGAAGTCCATGGCAAAGAGTACGGTTTTGGAGCCCATGACTTCCCAGTTAGTGGAGTTTTTGAAGTGGAACCAAGGAGCTGCCCAGGTTTTATTTATCGATGTTCCATTCAACTTGGCCGTATAAATATGCCTCCCTCTGAATTTAGGACATTTATTGAGCATGTTGCGGCAGAGTATCATGGGGATACCTATCACCTCATCTCCAAGAATTGTAACCATTTCACAGATGACATGGCACGTAGGTTGACAGAAAAACAGGTTCCTGGATGGGTGAATCGACTTGCTCGCCTAGGTGCCTTGTGCAGTTGTCTTCTTCCCGAAAGTCTTCAAGTGACCACTGTTAAACAGATACCTGAATACCATCATGAGTCAGATTCTCTAGAAGAAGATGGTACTGAAACCCTATCAATCACAACGCCTCGTGAGTCAGCGGAAGTTGATGATGATCAAGAAAAGCGCCTGCTGTCCCCACTGGCTTCACTTTCACCGGTGGCGGGAAGTGGAGATGTAACTTTCGTTAAAGAGGCTCAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

229

Amino Acids

25.35

Weight (kDa)

5.16

Isoelectric Point (pI)

50.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 23 - 157 4.1e-48 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 443
AccB7I CCANNNNNTGG 1 cut(s) 200
AccII CGCG 1 cut(s) 27
AccIII TCCGGA 1 cut(s) 143
AciI CCGC 6 cut(s) 27, 30, 33, 317, 581, 644
AcoI YGGCCR 1 cut(s) 265
AcsI RAATTY 1 cut(s) 290
AfaI GTAC 2 cut(s) 170, 544
AfiI CCNNNNNNNGG 2 cut(s) 200, 644
AgeI ACCGGT 1 cut(s) 637
AgsI TTSAA 6 cut(s) 41, 79, 152, 212, 260, 479
AjnI CCWGG 3 cut(s) 66, 232, 412
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 2 cut(s) 56, 131
Aor13HI TCCGGA 1 cut(s) 143
AoxI GGCC 1 cut(s) 265
ApeKI GCWGC 2 cut(s) 48, 228
ApoI RAATTY 1 cut(s) 290
AsiGI ACCGGT 1 cut(s) 637
Asp700I GAANNNNTTC 1 cut(s) 474
AspA2I CCTAGG 1 cut(s) 439
AspLEI GCGC 1 cut(s) 609
AsuHPI GGTGA 4 cut(s) 85, 335, 433, 627
AvrII CCTAGG 1 cut(s) 439
BanI GGYRCC 1 cut(s) 443
BanII GRGCYC 1 cut(s) 184
BauI CACGAG 1 cut(s) 570
BbsI GAAGAC 2 cut(s) 452, 467
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 2 cut(s) 60, 215
BccI CCATC 3 cut(s) 411, 519, 533
BceAI ACGGC 1 cut(s) 252
BciT130I CCWGG 3 cut(s) 68, 234, 414
BciVI GTATCC 1 cut(s) 328
BclI TGATCA 1 cut(s) 595
BcoDI GTCTC 2 cut(s) 56, 131
BfaI CTAG 2 cut(s) 440, 530
BfoI RGCGCY 1 cut(s) 610
BfuI GTATCC 1 cut(s) 328
BisI GCNGC 5 cut(s) 28, 31, 49, 229, 318
BlnI CCTAGG 1 cut(s) 439
BlsI GCNGC 5 cut(s) 29, 32, 50, 230, 319
Bme1390I CCNGG 3 cut(s) 68, 234, 414
BmiI GGNNCC 4 cut(s) 181, 219, 411, 445
BmrFI CCNGG 3 cut(s) 68, 234, 414
BmrI ACTGGG 1 cut(s) 188
BmuI ACTGGG 1 cut(s) 188
BpiI GAAGAC 2 cut(s) 452, 467
BplI GAGNNNNNCTC 2 cut(s) 34, 36
Bsa29I ATCGAT 1 cut(s) 247
BsaAI YACGTR 1 cut(s) 389
BsaBI GATNNNNATC 2 cut(s) 339, 594
BsaI GGTCTC 2 cut(s) 56, 131
BsaJI CCNNGG 5 cut(s) 66, 157, 221, 232, 439
BsaWI WCCGGW 2 cut(s) 143, 637
BsaXI ACNNNNNCTCC 2 cut(s) 335, 365
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 644
Bse118I RCCGGY 1 cut(s) 637
Bse1I ACTGG 2 cut(s) 194, 627
Bse8I GATNNNNATC 2 cut(s) 339, 594
BseAI TCCGGA 1 cut(s) 143
BseBI CCWGG 3 cut(s) 68, 234, 414
BseCI ATCGAT 1 cut(s) 247
BseDI CCNNGG 5 cut(s) 66, 157, 221, 232, 439
BseGI GGATG 1 cut(s) 422
BseJI GATNNNNATC 2 cut(s) 339, 594
BseLI CCNNNNNNNGG 2 cut(s) 200, 644
BseNI ACTGG 2 cut(s) 194, 627
BseXI GCAGC 2 cut(s) 60, 215
BsgI GTGCAG 1 cut(s) 472
Bsh1236I CGCG 1 cut(s) 27
BshFI GGCC 1 cut(s) 267
BshNI GGYRCC 1 cut(s) 443
BshTI ACCGGT 1 cut(s) 637
BshVI ATCGAT 1 cut(s) 247
BsiHKAI GWGCWC 1 cut(s) 17
BsiSI CCGG 2 cut(s) 144, 638
BslFI GGGAC 1 cut(s) 601
BslI CCNNNNNNNGG 2 cut(s) 200, 644
BsmAI GTCTC 2 cut(s) 56, 131
BsmFI GGGAC 1 cut(s) 601
BsnI GGCC 1 cut(s) 267
Bso31I GGTCTC 2 cut(s) 56, 131
Bsp1286I GDGCHC 2 cut(s) 17, 184
Bsp13I TCCGGA 1 cut(s) 143
Bsp143I GATC 1 cut(s) 595
Bsp19I CCATGG 1 cut(s) 157
BspACI CCGC 6 cut(s) 27, 30, 33, 317, 581, 644
BspANI GGCC 1 cut(s) 267
BspDI ATCGAT 1 cut(s) 247
BspEI TCCGGA 1 cut(s) 143
BspFNI CGCG 1 cut(s) 27
BspHI TCATGA 1 cut(s) 514
BspLI GGNNCC 4 cut(s) 181, 219, 411, 445
BspT107I GGYRCC 1 cut(s) 443
BspTNI GGTCTC 2 cut(s) 56, 131
BsrFI RCCGGY 1 cut(s) 637
BsrI ACTGG 2 cut(s) 194, 627
BssAI RCCGGY 1 cut(s) 637
BssECI CCNNGG 5 cut(s) 66, 157, 221, 232, 439
BssMI GATC 1 cut(s) 595
BssSI CACGAG 1 cut(s) 570
BssT1I CCWWGG 3 cut(s) 157, 221, 439
Bst2BI CACGAG 1 cut(s) 570
Bst2UI CCWGG 3 cut(s) 68, 234, 414
Bst4CI ACNGT 3 cut(s) 115, 173, 490
BstBAI YACGTR 1 cut(s) 389
BstC8I GCNNGC 2 cut(s) 436, 611
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 1 cut(s) 422
BstFNI CGCG 1 cut(s) 27
BstH2I RGCGCY 1 cut(s) 610
BstHHI GCGC 1 cut(s) 609
BstKTI GATC 1 cut(s) 598
BstMAI GTCTC 2 cut(s) 56, 131
BstMBI GATC 1 cut(s) 595
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNI CCWGG 3 cut(s) 68, 234, 414
BstNSI RCATGY 1 cut(s) 314
BstSCI CCNGG 3 cut(s) 66, 232, 412
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 60, 215
BstV2I GAAGAC 2 cut(s) 452, 467
Bsu15I ATCGAT 1 cut(s) 247
BsuI GTATCC 1 cut(s) 328
BsuRI GGCC 1 cut(s) 267
BsuTUI ATCGAT 1 cut(s) 247
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 1 cut(s) 422
BtsIMutI CAGTG 2 cut(s) 486, 620
Cac8I GCNNGC 2 cut(s) 436, 611
CciI TCATGA 1 cut(s) 514
CfoI GCGC 1 cut(s) 609
Cfr10I RCCGGY 1 cut(s) 637
ClaI ATCGAT 1 cut(s) 247
CseI GACGC 1 cut(s) 33
Csp6I GTAC 2 cut(s) 169, 543
CspAI ACCGGT 1 cut(s) 637
CviAII CATG 6 cut(s) 158, 185, 311, 329, 382, 515
CviJI RGCY 6 cut(s) 57, 182, 228, 267, 626, 677
CviKI_1 RGCY 6 cut(s) 57, 182, 228, 267, 626, 677
CviQI GTAC 2 cut(s) 169, 543
DpnI GATC 1 cut(s) 597
DpnII GATC 1 cut(s) 595
EaeI YGGCCR 1 cut(s) 265
Eco130I CCWWGG 3 cut(s) 157, 221, 439
Eco24I GRGCYC 1 cut(s) 184
Eco31I GGTCTC 2 cut(s) 56, 131
EcoRII CCWGG 3 cut(s) 66, 232, 412
EcoT14I CCWWGG 3 cut(s) 157, 221, 439
EcoT38I GRGCYC 1 cut(s) 184
ErhI CCWWGG 3 cut(s) 157, 221, 439
FaeI CATG 6 cut(s) 161, 188, 314, 332, 385, 518
FaiI YATR 8 cut(s) 159, 186, 272, 278, 312, 330, 383, 516
FaqI GGGAC 1 cut(s) 601
FatI CATG 6 cut(s) 157, 184, 310, 328, 381, 514
FauI CCCGC 2 cut(s) 26, 637
FbaI TGATCA 1 cut(s) 595
Fnu4HI GCNGC 5 cut(s) 28, 31, 49, 229, 318
FokI GGATG 1 cut(s) 429
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 5 cut(s) 28, 31, 49, 229, 318
FspBI CTAG 2 cut(s) 440, 530
GlaI GCGC 1 cut(s) 608
GluI GCNGC 5 cut(s) 28, 31, 49, 229, 318
HaeII RGCGCY 1 cut(s) 610
HaeIII GGCC 1 cut(s) 267
HapII CCGG 2 cut(s) 144, 638
HgaI GACGC 1 cut(s) 33
HhaI GCGC 1 cut(s) 609
Hin1II CATG 6 cut(s) 161, 188, 314, 332, 385, 518
Hin6I GCGC 1 cut(s) 607
HinP1I GCGC 1 cut(s) 607
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HinfI GANTC 5 cut(s) 132, 424, 518, 524, 575
HpaII CCGG 2 cut(s) 144, 638
HphI GGTGA 4 cut(s) 85, 335, 433, 627
Hpy166II GTNNAC 2 cut(s) 85, 396
Hpy188I TCNGA 3 cut(s) 131, 289, 523
Hpy188III TCNNGA 7 cut(s) 21, 144, 467, 515, 530, 572, 599
Hpy8I GTNNAC 2 cut(s) 85, 396
Hpy99I CGWCG 1 cut(s) 27
HpyCH4III ACNGT 3 cut(s) 115, 173, 490
HpyCH4IV ACGT 1 cut(s) 388
HpyCH4V TGCA 1 cut(s) 453
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 388
Hsp92II CATG 6 cut(s) 161, 188, 314, 332, 385, 518
HspAI GCGC 1 cut(s) 607
Kpn2I TCCGGA 1 cut(s) 143
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 1 cut(s) 595
LmnI GCTCC 2 cut(s) 179, 225
Lsp1109I GCAGC 2 cut(s) 60, 215
MaeI CTAG 2 cut(s) 440, 530
MaeII ACGT 1 cut(s) 388
MaeIII GTNAC 3 cut(s) 362, 481, 658
MalI GATC 1 cut(s) 597
MboI GATC 1 cut(s) 595
MboII GAAGA 5 cut(s) 452, 455, 467, 545, 548
MhlI GDGCHC 2 cut(s) 17, 184
MluCI AATT 4 cut(s) 106, 147, 290, 358
MlyI GAGTC 2 cut(s) 527, 584
MnlI CCTC 8 cut(s) 28, 101, 110, 291, 295, 356, 579, 667
MroI TCCGGA 1 cut(s) 143
MroXI GAANNNNTTC 1 cut(s) 474
MseI TTAA 2 cut(s) 492, 669
MspA1I CMGCKG 1 cut(s) 581
MspI CCGG 2 cut(s) 144, 638
MspR9I CCNGG 3 cut(s) 68, 234, 414
MvaI CCWGG 3 cut(s) 68, 234, 414
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 54
NcoI CCATGG 1 cut(s) 157
NdeII GATC 1 cut(s) 595
NlaIII CATG 6 cut(s) 161, 188, 314, 332, 385, 518
NlaIV GGNNCC 4 cut(s) 181, 219, 411, 445
NmuCI GTSAC 1 cut(s) 481
NspI RCATGY 1 cut(s) 314
PagI TCATGA 1 cut(s) 514
PdmI GAANNNNTTC 1 cut(s) 474
PfeI GAWTC 3 cut(s) 132, 424, 524
PflMI CCANNNNNTGG 1 cut(s) 200
PfoI TCCNGGA 1 cut(s) 412
PinAI ACCGGT 1 cut(s) 637
PkrI GCNGC 5 cut(s) 29, 32, 50, 230, 319
PleI GAGTC 2 cut(s) 526, 583
PpsI GAGTC 2 cut(s) 526, 583
Ppu21I YACGTR 1 cut(s) 389
Psp6I CCWGG 3 cut(s) 66, 232, 412
PspGI CCWGG 3 cut(s) 66, 232, 412
PspN4I GGNNCC 4 cut(s) 181, 219, 411, 445
RsaI GTAC 2 cut(s) 170, 544
RsaNI GTAC 2 cut(s) 169, 543
SaqAI TTAA 2 cut(s) 492, 669
SatI GCNGC 5 cut(s) 28, 31, 49, 229, 318
Sau3AI GATC 1 cut(s) 595
SchI GAGTC 2 cut(s) 527, 584
ScrFI CCNGG 3 cut(s) 68, 234, 414
SduI GDGCHC 2 cut(s) 17, 184
SgrAI CRCCGGYG 1 cut(s) 637
Sse9I AATT 4 cut(s) 106, 147, 290, 358
SsiI CCGC 6 cut(s) 27, 30, 33, 317, 581, 644
SspMI CTAG 2 cut(s) 440, 530
StyD4I CCNGG 3 cut(s) 66, 232, 412
StyI CCWWGG 3 cut(s) 157, 221, 439
TaaI ACNGT 3 cut(s) 115, 173, 490
TaiI ACGT 1 cut(s) 391
TaqI TCGA 3 cut(s) 22, 247, 427
TaqII GACCGA 1 cut(s) 113
TasI AATT 4 cut(s) 106, 147, 290, 358
TauI GCSGC 3 cut(s) 30, 33, 320
TfiI GAWTC 3 cut(s) 132, 424, 524
Tru1I TTAA 2 cut(s) 492, 669
Tru9I TTAA 2 cut(s) 492, 669
TscAI CASTG 2 cut(s) 493, 627
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 2 cut(s) 48, 228
Tsp45I GTSAC 1 cut(s) 481
TspRI CASTG 2 cut(s) 493, 627
Van91I CCANNNNNTGG 1 cut(s) 200
XapI RAATTY 1 cut(s) 290
XbaI TCTAGA 1 cut(s) 529
XceI RCATGY 1 cut(s) 314
XmaJI CCTAGG 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 474
XspI CTAG 2 cut(s) 440, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.