FvH4_1g06764

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0018343
Physical Location & Seq
Forward (+)
3561611 .. 3563346
1736 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06764.t1

Sequence Viewer

Length: 1500 bp
ATGGGGAGTATGTACCTCCCAACGACTCGTAGAAGCAGCAGTTCTCTCCATAACATTGTTGAGGAGTTCACCAAGAAACGTTACAGAGAGATGTTGAACAAAGAAGACGAACAAGAAGAGGAATATCTTCAATCTAGACAGGTCAAAACAAGAACTTTTGCGGAACTAGCAGCTGAACTTCCCCGGCTGATGACGAACATGAGCTTGCCCTGCGGACAGGTTCAGAGGGAGCAGGACGCAGCAGCCATACAAAATTACACATCCAAACGAAAGTTAACTAACTCACATGAAGATGAAGAGCAAGAGGTCAAACGACGAAAGACTTTGGAGCAACTTGGCAAGAAAATTGAAGCCTTCAGAATAACTACCACCAAAGAAGAATATGGTAAGAGTTACAATAGAGATTTCTCAAATCTTCCATCAGATATTCTGCTTCTTATTCTGGATAAGTTGCTAGAACCCATTGACCATGCTCGTTTTGCTGTGGTACGTAAGGAATGGCAGTCTCTTGCAAAAGAGTACAACTGTGAAACCAAGCCCTGGCTTAGGGTTCTCACCCCCATGCTACTGATCCCTACCCATTCTCATGGCTCCCATGACCCAACTACCATGCTTTACAGCGTGTCTGAAAGAACATTCTACAGAAATATTAAGTTACCAGTGCCTGGTGATGATACGATCTACTGTGGTTTTGGTTGGACGGCTAAGTTACGGTATCAAAATAAGTTCCTAGATGGTATAGCAATAACTCTGACTAACCCTTTCAGAGACTCAAATGATGTTATTCATCTCCCTCCAATATCCCCAATTTGGTTTTCTAGTGCAATGCCTGAAGTGAAGATCATCTTGCCTTCTGATCCCACTTTGGATCGGAACAATTTTGTGGTTCTAGCCATATGTGATCATAGTCTGTTATTAATCGGAGGAGGACAAAAACATTGGATTTGTCCCATGAGTGACAGGTGCAGTACTGCAACATATTATGAAGGGCTAGTGTTCTCAGTTATTGATTTTGGAAGAAGTACTGACCTTGTTGTAAGATTCCGCCGCGGTAGTAACTATTACAAGCTACATGTGGCATGGCTTGGTCACCTTGATGATAAACTCCGTCTTGTTCAGACATATTTGGTAACATCAACAAAGGGAGATTTATTGGTTGTTAAGAGATTGTTGGAAGGAAGAAAGCTGAGGTTCAAGGTTTTCAAGTGGGTTGAATCCAGAGCACTGATAACTGAGGTAGATAACATTGGGGATGAGGCTATTTTCGTGGGCAGCAATCAATCGGTATGTGTTTCGGCTTCAAAGTTTCCAGGGTACATGCAGCCAAATTCTATATACTACACGGATGATGTAGCTCTGCAGGGAGAGAAAAGATCAGAAGATATGGGCATCTTCAATTTAAAGGATGGAACCATTACACAACTTTGTCCTCACAATCAGTTTGTGGAGGGGAGCAAGGGGCGGGCAATCTGGATTACACCAGCTTTTCCAGAATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

500

Amino Acids

57.35

Weight (kDa)

8.22

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 205 - 466 1.3e-31 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018343)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g06764 FvH4_1g06765
rosa_laevigata RLG00000016319
rosa_multiflora Rmu_sc0002174.1_g000002 Rmu_sc0002503.1_g000018 Rmu_sc0004296.1_g000013
rosa_samantha Rh2AG073000 Rh2BG073700 Rh2CG074800 Rh2DG071800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 540, 665
AccII CGCG 1 cut(s) 1050
AciI CCGC 6 cut(s) 161, 213, 1045, 1048, 1050, 1462
AclI AACGTT 1 cut(s) 79
AclWI GGATC 3 cut(s) 565, 851, 876
AcsI RAATTY 1 cut(s) 1327
AcuI CTGAAG 2 cut(s) 340, 852
AfaI GTAC 6 cut(s) 14, 489, 521, 970, 1024, 1316
AfiI CCNNNNNNNGG 4 cut(s) 540, 546, 665, 810
AflIII ACRYGT 1 cut(s) 1072
AgsI TTSAA 8 cut(s) 97, 131, 350, 1195, 1204, 1214, 1302, 1396
AjnI CCWGG 3 cut(s) 539, 664, 1309
AjuI GAANNNNNNNTTGG 2 cut(s) 799, 831
AluBI AGCT 6 cut(s) 173, 204, 1069, 1186, 1355, 1484
AluI AGCT 6 cut(s) 173, 204, 1069, 1186, 1355, 1484
Alw21I GWGCWC 1 cut(s) 1225
Alw26I GTCTC 2 cut(s) 510, 762
AlwI GGATC 3 cut(s) 565, 851, 876
AlwNI CAGNNNCTG 1 cut(s) 665
ApeKI GCWGC 6 cut(s) 36, 170, 239, 242, 1272, 1321
ApoI RAATTY 1 cut(s) 1327
AseI ATTAAT 1 cut(s) 917
Asp700I GAANNNNTTC 1 cut(s) 126
AsuC2I CCSGG 1 cut(s) 184
AsuHPI GGTGA 4 cut(s) 61, 547, 680, 1082
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 1225
BbvCI CCTCAGC 1 cut(s) 1187
BbvI GCAGC 6 cut(s) 48, 182, 251, 254, 1284, 1333
BccI CCATC 3 cut(s) 427, 728, 1400
BceAI ACGGC 1 cut(s) 717
BciT130I CCWGG 3 cut(s) 541, 666, 1311
BclI TGATCA 1 cut(s) 901
BcnI CCSGG 1 cut(s) 184
BcoDI GTCTC 2 cut(s) 510, 762
BfaI CTAG 8 cut(s) 135, 167, 455, 731, 819, 890, 992, 1498
BfmI CTRYAG 2 cut(s) 640, 1358
BisI GCNGC 7 cut(s) 37, 171, 240, 243, 1048, 1273, 1322
BlsI GCNGC 7 cut(s) 38, 172, 241, 244, 1049, 1274, 1323
BmcAI AGTACT 2 cut(s) 970, 1024
Bme1390I CCNGG 4 cut(s) 184, 541, 666, 1311
BmiI GGNNCC 2 cut(s) 592, 1411
BmrFI CCNGG 4 cut(s) 184, 541, 666, 1311
BmsI GCATC 1 cut(s) 1398
BpiI GAAGAC 1 cut(s) 111
Bpu10I CCTNAGC 2 cut(s) 545, 1187
BpuMI CCSGG 1 cut(s) 184
BsaAI YACGTR 1 cut(s) 491
BsaJI CCNNGG 4 cut(s) 182, 539, 1048, 1310
Bsc4I CCNNNNNNNGG 4 cut(s) 540, 546, 665, 810
Bse1I ACTGG 1 cut(s) 659
Bse3DI GCAATG 1 cut(s) 831
BseBI CCWGG 3 cut(s) 541, 666, 1311
BseDI CCNNGG 4 cut(s) 182, 539, 1048, 1310
BseGI GGATG 4 cut(s) 260, 1258, 1351, 1411
BseLI CCNNNNNNNGG 4 cut(s) 540, 546, 665, 810
BseMI GCAATG 1 cut(s) 831
BseMII CTCAG 3 cut(s) 1014, 1178, 1224
BseNI ACTGG 1 cut(s) 659
BseRI GAGGAG 2 cut(s) 77, 939
BseXI GCAGC 6 cut(s) 48, 182, 251, 254, 1284, 1333
BsgI GTGCAG 1 cut(s) 985
Bsh1236I CGCG 1 cut(s) 1050
BsiHKAI GWGCWC 1 cut(s) 1225
BsiSI CCGG 1 cut(s) 184
BslFI GGGAC 1 cut(s) 933
BslI CCNNNNNNNGG 4 cut(s) 540, 546, 665, 810
BsmAI GTCTC 2 cut(s) 510, 762
BsmFI GGGAC 1 cut(s) 933
BsmI GAATGC 1 cut(s) 1499
Bsp1286I GDGCHC 1 cut(s) 1225
Bsp143I GATC 7 cut(s) 570, 678, 840, 856, 868, 901, 1373
BspACI CCGC 6 cut(s) 161, 213, 1045, 1048, 1050, 1462
BspCNI CTCAG 3 cut(s) 1013, 1179, 1225
BspFNI CGCG 1 cut(s) 1050
BspLI GGNNCC 2 cut(s) 592, 1411
BspMAI CTGCAG 1 cut(s) 1362
BspPI GGATC 3 cut(s) 565, 851, 876
BspQI GCTCTTC 1 cut(s) 291
BsrDI GCAATG 1 cut(s) 831
BsrI ACTGG 1 cut(s) 659
BssECI CCNNGG 4 cut(s) 182, 539, 1048, 1310
BssMI GATC 7 cut(s) 570, 678, 840, 856, 868, 901, 1373
Bst2UI CCWGG 3 cut(s) 541, 666, 1311
Bst4CI ACNGT 3 cut(s) 527, 686, 714
Bst6I CTCTTC 2 cut(s) 111, 291
BstBAI YACGTR 1 cut(s) 491
BstC8I GCNNGC 2 cut(s) 206, 1464
BstDEI CTNAG 5 cut(s) 545, 705, 1000, 1187, 1233
BstDSI CCRYGG 1 cut(s) 1048
BstEII GGTNACC 1 cut(s) 1088
BstENI CCTNNNNNAGG 1 cut(s) 544
BstF5I GGATG 4 cut(s) 260, 1258, 1351, 1411
BstFNI CGCG 1 cut(s) 1050
BstKTI GATC 7 cut(s) 573, 681, 843, 859, 871, 904, 1376
BstMAI GTCTC 2 cut(s) 510, 762
BstMBI GATC 7 cut(s) 570, 678, 840, 856, 868, 901, 1373
BstMWI GCNNNNNNNGC 3 cut(s) 167, 210, 479
BstNI CCWGG 3 cut(s) 541, 666, 1311
BstNSI RCATGY 2 cut(s) 1076, 1321
BstPI GGTNACC 1 cut(s) 1088
BstSCI CCNGG 4 cut(s) 182, 539, 664, 1309
BstSFI CTRYAG 2 cut(s) 640, 1358
BstSNI TACGTA 1 cut(s) 491
BstUI CGCG 1 cut(s) 1050
BstV1I GCAGC 6 cut(s) 48, 182, 251, 254, 1284, 1333
BstV2I GAAGAC 1 cut(s) 111
BstXI CCANNNNNNTGG 1 cut(s) 587
BtgI CCRYGG 1 cut(s) 1048
BtsCI GGATG 4 cut(s) 260, 1258, 1351, 1411
BtsIMutI CAGTG 2 cut(s) 666, 1223
Cac8I GCNNGC 2 cut(s) 206, 1464
CaiI CAGNNNCTG 1 cut(s) 665
Cfr42I CCGCGG 1 cut(s) 1051
CseI GACGC 1 cut(s) 245
Csp6I GTAC 6 cut(s) 13, 488, 520, 969, 1023, 1315
CviQI GTAC 6 cut(s) 13, 488, 520, 969, 1023, 1315
DdeI CTNAG 5 cut(s) 545, 705, 1000, 1187, 1233
DpnI GATC 7 cut(s) 572, 680, 842, 858, 870, 903, 1375
DpnII GATC 7 cut(s) 570, 678, 840, 856, 868, 901, 1373
DraI TTTAAA 1 cut(s) 1401
Eam1104I CTCTTC 2 cut(s) 111, 291
EarI CTCTTC 2 cut(s) 111, 291
EciI GGCGGA 1 cut(s) 1034
Eco105I TACGTA 1 cut(s) 491
Eco57I CTGAAG 2 cut(s) 340, 852
Eco91I GGTNACC 1 cut(s) 1088
EcoNI CCTNNNNNAGG 1 cut(s) 544
EcoO65I GGTNACC 1 cut(s) 1088
EcoRII CCWGG 3 cut(s) 539, 664, 1309
FalI AAGNNNNNCTT 2 cut(s) 830, 862
FaqI GGGAC 1 cut(s) 933
FauI CCCGC 1 cut(s) 1455
FauNDI CATATG 1 cut(s) 896
FbaI TGATCA 1 cut(s) 901
Fnu4HI GCNGC 7 cut(s) 37, 171, 240, 243, 1048, 1273, 1322
FokI GGATG 4 cut(s) 247, 1265, 1358, 1418
Fsp4HI GCNGC 7 cut(s) 37, 171, 240, 243, 1048, 1273, 1322
FspBI CTAG 8 cut(s) 135, 167, 455, 731, 819, 890, 992, 1498
GluI GCNGC 7 cut(s) 37, 171, 240, 243, 1048, 1273, 1322
HapII CCGG 1 cut(s) 184
HgaI GACGC 1 cut(s) 245
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HinfI GANTC 4 cut(s) 25, 770, 1041, 1214
HpaI GTTAAC 1 cut(s) 276
HpaII CCGG 1 cut(s) 184
HphI GGTGA 4 cut(s) 61, 547, 680, 1082
Hpy166II GTNNAC 2 cut(s) 69, 276
Hpy188III TCNNGA 5 cut(s) 135, 443, 1218, 1471, 1490
Hpy8I GTNNAC 2 cut(s) 69, 276
Hpy99I CGWCG 1 cut(s) 318
HpyAV CCTTC 4 cut(s) 364, 861, 980, 1169
HpyCH4III ACNGT 3 cut(s) 527, 686, 714
HpyCH4IV ACGT 2 cut(s) 79, 490
HpyCH4V TGCA 6 cut(s) 512, 824, 966, 974, 1321, 1360
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 210, 479
HpyF3I CTNAG 5 cut(s) 545, 705, 1000, 1187, 1233
HpySE526I ACGT 2 cut(s) 79, 490
Ksp22I TGATCA 1 cut(s) 901
KspAI GTTAAC 1 cut(s) 276
KspI CCGCGG 1 cut(s) 1051
Kzo9I GATC 7 cut(s) 570, 678, 840, 856, 868, 901, 1373
LguI GCTCTTC 1 cut(s) 291
LmnI GCTCC 4 cut(s) 229, 328, 596, 1452
Lsp1109I GCAGC 6 cut(s) 48, 182, 251, 254, 1284, 1333
LweI GCATC 1 cut(s) 1398
MaeI CTAG 8 cut(s) 135, 167, 455, 731, 819, 890, 992, 1498
MaeII ACGT 2 cut(s) 79, 490
MaeIII GTNAC 8 cut(s) 80, 392, 654, 708, 956, 1055, 1088, 1129
MalI GATC 7 cut(s) 572, 680, 842, 858, 870, 903, 1375
MboI GATC 7 cut(s) 570, 678, 840, 856, 868, 901, 1373
MhlI GDGCHC 1 cut(s) 1225
MluCI AATT 6 cut(s) 253, 345, 807, 877, 1327, 1396
MlyI GAGTC 2 cut(s) 19, 764
MmeI TCCRAC 2 cut(s) 677, 1152
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 5 cut(s) 275, 651, 917, 1161, 1400
MslI CAYNNNNRTG 4 cut(s) 291, 560, 585, 1095
MspA1I CMGCKG 2 cut(s) 173, 1050
MspI CCGG 1 cut(s) 184
MspR9I CCNGG 4 cut(s) 184, 541, 666, 1311
Mva1269I GAATGC 1 cut(s) 1499
MvaI CCWGG 3 cut(s) 541, 666, 1311
MvnI CGCG 1 cut(s) 1050
MwoI GCNNNNNNNGC 3 cut(s) 167, 210, 479
NciI CCSGG 1 cut(s) 184
NdeI CATATG 1 cut(s) 896
NdeII GATC 7 cut(s) 570, 678, 840, 856, 868, 901, 1373
NlaIV GGNNCC 2 cut(s) 592, 1411
NmuCI GTSAC 2 cut(s) 956, 1088
NspI RCATGY 2 cut(s) 1076, 1321
PciI ACATGT 1 cut(s) 1072
PciSI GCTCTTC 1 cut(s) 291
PctI GAATGC 1 cut(s) 1499
PdmI GAANNNNTTC 1 cut(s) 126
PfeI GAWTC 2 cut(s) 1041, 1214
PflMI CCANNNNNTGG 2 cut(s) 540, 665
PkrI GCNGC 7 cut(s) 38, 172, 241, 244, 1049, 1274, 1323
PleI GAGTC 2 cut(s) 19, 764
PpsI GAGTC 2 cut(s) 19, 764
Ppu21I YACGTR 1 cut(s) 491
PscI ACATGT 1 cut(s) 1072
PshBI ATTAAT 1 cut(s) 917
Psp1406I AACGTT 1 cut(s) 79
Psp6I CCWGG 3 cut(s) 539, 664, 1309
PspEI GGTNACC 1 cut(s) 1088
PspGI CCWGG 3 cut(s) 539, 664, 1309
PspN4I GGNNCC 2 cut(s) 592, 1411
PstI CTGCAG 1 cut(s) 1362
PstNI CAGNNNCTG 1 cut(s) 665
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 6 cut(s) 14, 489, 521, 970, 1024, 1316
RsaNI GTAC 6 cut(s) 13, 488, 520, 969, 1023, 1315
RseI CAYNNNNRTG 4 cut(s) 291, 560, 585, 1095
SacII CCGCGG 1 cut(s) 1051
SapI GCTCTTC 1 cut(s) 291
SaqAI TTAA 5 cut(s) 275, 651, 917, 1161, 1400
SatI GCNGC 7 cut(s) 37, 171, 240, 243, 1048, 1273, 1322
Sau3AI GATC 7 cut(s) 570, 678, 840, 856, 868, 901, 1373
ScaI AGTACT 2 cut(s) 970, 1024
SchI GAGTC 2 cut(s) 19, 764
ScrFI CCNGG 4 cut(s) 184, 541, 666, 1311
SduI GDGCHC 1 cut(s) 1225
SfaNI GCATC 1 cut(s) 1398
SfcI CTRYAG 2 cut(s) 640, 1358
Sfr303I CCGCGG 1 cut(s) 1051
SgrBI CCGCGG 1 cut(s) 1051
SmiMI CAYNNNNRTG 4 cut(s) 291, 560, 585, 1095
SnaBI TACGTA 1 cut(s) 491
Sse9I AATT 6 cut(s) 253, 345, 807, 877, 1327, 1396
SsiI CCGC 6 cut(s) 161, 213, 1045, 1048, 1050, 1462
SspI AATATT 1 cut(s) 649
SspMI CTAG 8 cut(s) 135, 167, 455, 731, 819, 890, 992, 1498
StyD4I CCNGG 4 cut(s) 182, 539, 664, 1309
TaaI ACNGT 3 cut(s) 527, 686, 714
TaiI ACGT 2 cut(s) 82, 493
TasI AATT 6 cut(s) 253, 345, 807, 877, 1327, 1396
TatI WGTACW 3 cut(s) 519, 968, 1022
TauI GCSGC 1 cut(s) 1050
TfiI GAWTC 2 cut(s) 1041, 1214
Tru1I TTAA 5 cut(s) 275, 651, 917, 1161, 1400
Tru9I TTAA 5 cut(s) 275, 651, 917, 1161, 1400
TscAI CASTG 2 cut(s) 666, 1230
TseFI GTSAC 2 cut(s) 956, 1088
TseI GCWGC 6 cut(s) 36, 170, 239, 242, 1272, 1321
Tsp45I GTSAC 2 cut(s) 956, 1088
TspDTI ATGAA 4 cut(s) 303, 309, 776, 999
TspGWI ACGGA 2 cut(s) 1097, 1358
TspRI CASTG 2 cut(s) 666, 1230
Van91I CCANNNNNTGG 2 cut(s) 540, 665
VspI ATTAAT 1 cut(s) 917
XagI CCTNNNNNAGG 1 cut(s) 544
XapI RAATTY 1 cut(s) 1327
XbaI TCTAGA 1 cut(s) 134
XceI RCATGY 2 cut(s) 1076, 1321
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 8 cut(s) 135, 167, 455, 731, 819, 890, 992, 1498
ZrmI AGTACT 2 cut(s) 970, 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.