Rh2AG073000

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018343
Physical Location & Seq
Forward (+)
6128977 .. 6129534
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG073000.1

Sequence Viewer

Length: 558 bp
ATGGGGATTATGAACCTGCCTACGATCCGTAGATGCAGTTCTGTCCATAACATTGTTGAAAAGTTCATCAAGAAGCGTTACAGAAAGAAGTTGGACATGTTGACGAATGAAGAAGATGAACAAGAAGAGGAATATCTGCAAGCTAGGCAGGTTAAAAGACGAATTTTCCCTGAAGTAGAAGCTGAACTTGCCCGGCTGATGATGAAGTTGAACTTGCCCTGCGGACGGGTTCAAAGAAAGTGGGAGCAGGACACAGCAGCCATACAAAAGTACACAACGAAACGAAAGTTAACTAATTTACATGAAGACGAAGAGGAAGAGGAAGAGATCACATGGGTCAAACGACGAAAGACTTTGGAGCACATTGGCAAGGAAATCAAAGCCTTGAGGATAACTACAAGACAAGAATATGGTACGAGTCGCAATATAGATTTCGCGAGTCTTCCTCCAGATATTGTGCTTCTTATTCTGGATAAGTTGTTAGAACCCATTGACCATGCTCGTTTTGCTGTCGTCTGTAAGGAATGGCAGTCTCTTGCAATTTGCAAAACAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

185

Amino Acids

22.01

Weight (kDa)

8.83

Isoelectric Point (pI)

61.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 145 - 180 2.6e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018343)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g06764 FvH4_1g06765
rosa_laevigata RLG00000016319
rosa_multiflora Rmu_sc0002174.1_g000002 Rmu_sc0002503.1_g000018 Rmu_sc0004296.1_g000013
rosa_samantha Rh2AG073000 Rh2BG073700 Rh2CG074800 Rh2DG071800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 24, 139
AccII CGCG 1 cut(s) 437
AciI CCGC 1 cut(s) 222
AclWI GGATC 1 cut(s) 19
AcsI RAATTY 1 cut(s) 162
AcuI CTGAAG 1 cut(s) 192
AfaI GTAC 2 cut(s) 272, 415
AfiI CCNNNNNNNGG 1 cut(s) 225
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 3 cut(s) 59, 211, 233
AluBI AGCT 2 cut(s) 143, 182
AluI AGCT 2 cut(s) 143, 182
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 1 cut(s) 537
AlwI GGATC 1 cut(s) 19
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 1 cut(s) 162
AsuC2I CCSGG 1 cut(s) 193
BbsI GAAGAC 2 cut(s) 312, 434
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 269
BcnI CCSGG 1 cut(s) 193
BcoDI GTCTC 1 cut(s) 537
BfaI CTAG 1 cut(s) 144
BfuAI ACCTGC 2 cut(s) 24, 139
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 193
BmsI GCATC 1 cut(s) 23
BpiI GAAGAC 2 cut(s) 312, 434
BplI GAGNNNNNCTC 2 cut(s) 430, 462
BpmI CTGGAG 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 406
BpuMI CCSGG 1 cut(s) 193
Bsc4I CCNNNNNNNGG 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 225
BseXI GCAGC 1 cut(s) 269
Bsh1236I CGCG 1 cut(s) 437
BsiHKAI GWGCWC 1 cut(s) 363
BsiSI CCGG 1 cut(s) 193
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 1 cut(s) 537
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 2 cut(s) 24, 327
Bsp68I TCGCGA 1 cut(s) 437
BspACI CCGC 1 cut(s) 222
BspFNI CGCG 1 cut(s) 437
BspMI ACCTGC 2 cut(s) 24, 139
BspPI GGATC 1 cut(s) 19
BssMI GATC 2 cut(s) 24, 327
Bst4CI ACNGT 1 cut(s) 553
Bst6I CTCTTC 4 cut(s) 120, 306, 312, 318
BstC8I GCNNGC 1 cut(s) 141
BstFNI CGCG 1 cut(s) 437
BstKTI GATC 2 cut(s) 27, 330
BstMAI GTCTC 1 cut(s) 537
BstMBI GATC 2 cut(s) 24, 327
BstMWI GCNNNNNNNGC 3 cut(s) 145, 188, 506
BstNSI RCATGY 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 191
BstUI CGCG 1 cut(s) 437
BstV1I GCAGC 1 cut(s) 269
BstV2I GAAGAC 2 cut(s) 312, 434
BtuMI TCGCGA 1 cut(s) 437
BveI ACCTGC 2 cut(s) 24, 139
Cac8I GCNNGC 1 cut(s) 141
Csp6I GTAC 2 cut(s) 271, 414
CspCI CAANNNNNGTGG 2 cut(s) 221, 256
CviAII CATG 4 cut(s) 97, 302, 333, 497
CviJI RGCY 5 cut(s) 143, 182, 196, 260, 383
CviKI_1 RGCY 5 cut(s) 143, 182, 196, 260, 383
CviQI GTAC 2 cut(s) 271, 414
DpnI GATC 2 cut(s) 26, 329
DpnII GATC 2 cut(s) 24, 327
Eam1104I CTCTTC 4 cut(s) 120, 306, 312, 318
EarI CTCTTC 4 cut(s) 120, 306, 312, 318
Eco57I CTGAAG 1 cut(s) 192
FaeI CATG 4 cut(s) 100, 305, 336, 500
FalI AAGNNNNNCTT 4 cut(s) 171, 203, 197, 229
FatI CATG 4 cut(s) 96, 301, 332, 496
Fnu4HI GCNGC 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 1 cut(s) 144
GluI GCNGC 1 cut(s) 258
GsuI CTGGAG 1 cut(s) 432
HapII CCGG 1 cut(s) 193
Hin1II CATG 4 cut(s) 100, 305, 336, 500
HincII GTYRAC 2 cut(s) 102, 291
HindII GTYRAC 2 cut(s) 102, 291
HinfI GANTC 2 cut(s) 418, 439
HpaI GTTAAC 1 cut(s) 291
HpaII CCGG 1 cut(s) 193
Hpy166II GTNNAC 3 cut(s) 102, 273, 291
Hpy188III TCNNGA 4 cut(s) 70, 436, 449, 470
Hpy8I GTNNAC 3 cut(s) 102, 273, 291
Hpy99I CGWCG 1 cut(s) 348
HpyCH4III ACNGT 1 cut(s) 553
HpyCH4V TGCA 4 cut(s) 36, 139, 539, 546
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 188, 506
Hsp92II CATG 4 cut(s) 100, 305, 336, 500
KspAI GTTAAC 1 cut(s) 291
Kzo9I GATC 2 cut(s) 24, 327
LmnI GCTCC 2 cut(s) 244, 358
LpnPI CCDG 8 cut(s) 29, 134, 183, 206, 232, 233, 455, 462
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 1 cut(s) 23
MaeI CTAG 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 77
MalI GATC 2 cut(s) 26, 329
MboI GATC 2 cut(s) 24, 327
MboII GAAGA 8 cut(s) 122, 125, 137, 317, 323, 329, 335, 434
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 3 cut(s) 162, 295, 540
MlyI GAGTC 2 cut(s) 427, 448
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 5 cut(s) 121, 307, 313, 381, 456
MseI TTAA 2 cut(s) 153, 290
MspI CCGG 1 cut(s) 193
MspR9I CCNGG 1 cut(s) 193
MvnI CGCG 1 cut(s) 437
MwoI GCNNNNNNNGC 3 cut(s) 145, 188, 506
NciI CCSGG 1 cut(s) 193
NdeII GATC 2 cut(s) 24, 327
NlaIII CATG 4 cut(s) 100, 305, 336, 500
NruI TCGCGA 1 cut(s) 437
NspI RCATGY 1 cut(s) 100
PciI ACATGT 1 cut(s) 96
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 2 cut(s) 426, 447
PpsI GAGTC 2 cut(s) 426, 447
PscI ACATGT 1 cut(s) 96
PsrI GAACNNNNNNTAC 2 cut(s) 22, 54
RruI TCGCGA 1 cut(s) 437
RsaI GTAC 2 cut(s) 272, 415
RsaNI GTAC 2 cut(s) 271, 414
SaqAI TTAA 2 cut(s) 153, 290
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 2 cut(s) 24, 327
SchI GAGTC 2 cut(s) 427, 448
ScrFI CCNGG 1 cut(s) 193
SduI GDGCHC 1 cut(s) 363
SetI ASST 4 cut(s) 18, 145, 153, 184
SfaNI GCATC 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 385
SmoI CTYRAG 1 cut(s) 385
Sse9I AATT 3 cut(s) 162, 295, 540
SsiI CCGC 1 cut(s) 222
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 191
TaaI ACNGT 1 cut(s) 553
TasI AATT 3 cut(s) 162, 295, 540
TatI WGTACW 1 cut(s) 270
Tru1I TTAA 2 cut(s) 153, 290
Tru9I TTAA 2 cut(s) 153, 290
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 6 cut(s) 26, 55, 123, 132, 218, 318
TspGWI ACGGA 1 cut(s) 17
XapI RAATTY 1 cut(s) 162
XceI RCATGY 1 cut(s) 100
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.