Rh2DG071800

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0018343
Physical Location & Seq
Forward (+)
5537274 .. 5537630
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG071800.1

Sequence Viewer

Length: 357 bp
ATGAAGTTGAACTTGCCCTGCGGACGGGTTCAAAGAGAGTGGGAGCAGGACACAGCAGCCATACAAAAGTACACAACGAAACGAAAGTTAACTAATTTACATGAAGACGAAGAGGAAGAGGAAGAGATCACATGGGTCAAACGACGAAAGACTTTGGAGCACATTGGCAAGGAAATCAAAGCCTTGAGGATAACTACAAGACAAGAATATGGTACGAGTCGCAATATAGATTTCGCGAGTCTTCCTCCAGATATTGTGCTTCTTATTCTGGATAAGTTGTTAGAACCCATTGACCATGCTCGTTTTGCTGTCGTCTGTAAGGAATGGCAGTCTCTTGCAATTTGCAAAACAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

118

Amino Acids

13.87

Weight (kDa)

6.83

Isoelectric Point (pI)

52.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 78 - 113 9.8e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018343)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g06764 FvH4_1g06765
rosa_laevigata RLG00000016319
rosa_multiflora Rmu_sc0002174.1_g000002 Rmu_sc0002503.1_g000018 Rmu_sc0004296.1_g000013
rosa_samantha Rh2AG073000 Rh2BG073700 Rh2CG074800 Rh2DG071800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 236
AciI CCGC 1 cut(s) 21
AfaI GTAC 2 cut(s) 71, 214
AfiI CCNNNNNNNGG 1 cut(s) 24
AgsI TTSAA 2 cut(s) 10, 32
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 336
ApeKI GCWGC 1 cut(s) 56
BbsI GAAGAC 2 cut(s) 111, 233
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 336
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
BpiI GAAGAC 2 cut(s) 111, 233
BplI GAGNNNNNCTC 2 cut(s) 229, 261
BpmI CTGGAG 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 205
Bsc4I CCNNNNNNNGG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 68
Bsh1236I CGCG 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 1 cut(s) 126
Bsp68I TCGCGA 1 cut(s) 236
BspACI CCGC 1 cut(s) 21
BspFNI CGCG 1 cut(s) 236
BssMI GATC 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 352
Bst6I CTCTTC 3 cut(s) 105, 111, 117
BstFNI CGCG 1 cut(s) 236
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 68
BstV2I GAAGAC 2 cut(s) 111, 233
BtuMI TCGCGA 1 cut(s) 236
Csp6I GTAC 2 cut(s) 70, 213
CspCI CAANNNNNGTGG 2 cut(s) 20, 55
CviAII CATG 3 cut(s) 101, 132, 296
CviJI RGCY 2 cut(s) 59, 182
CviKI_1 RGCY 2 cut(s) 59, 182
CviQI GTAC 2 cut(s) 70, 213
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
Eam1104I CTCTTC 3 cut(s) 105, 111, 117
EarI CTCTTC 3 cut(s) 105, 111, 117
FaeI CATG 3 cut(s) 104, 135, 299
FaiI YATR 7 cut(s) 62, 102, 133, 210, 227, 297, 355
FalI AAGNNNNNCTT 1 cut(s) 28
FatI CATG 3 cut(s) 100, 131, 295
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 57
GsuI CTGGAG 1 cut(s) 231
Hin1II CATG 3 cut(s) 104, 135, 299
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 2 cut(s) 217, 238
HpaI GTTAAC 1 cut(s) 90
Hpy166II GTNNAC 2 cut(s) 72, 90
Hpy188III TCNNGA 3 cut(s) 235, 248, 269
Hpy8I GTNNAC 2 cut(s) 72, 90
Hpy99I CGWCG 1 cut(s) 147
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4V TGCA 2 cut(s) 338, 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
Hsp92II CATG 3 cut(s) 104, 135, 299
KspAI GTTAAC 1 cut(s) 90
Kzo9I GATC 1 cut(s) 126
LmnI GCTCC 2 cut(s) 43, 157
LpnPI CCDG 4 cut(s) 31, 32, 254, 261
Lsp1109I GCAGC 1 cut(s) 68
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 5 cut(s) 116, 122, 128, 134, 233
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 2 cut(s) 94, 339
MlyI GAGTC 2 cut(s) 226, 247
MnlI CCTC 4 cut(s) 106, 112, 180, 255
MseI TTAA 1 cut(s) 89
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeII GATC 1 cut(s) 126
NlaIII CATG 3 cut(s) 104, 135, 299
NruI TCGCGA 1 cut(s) 236
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 2 cut(s) 225, 246
PpsI GAGTC 2 cut(s) 225, 246
RruI TCGCGA 1 cut(s) 236
RsaI GTAC 2 cut(s) 71, 214
RsaNI GTAC 2 cut(s) 70, 213
SaqAI TTAA 1 cut(s) 89
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 126
SchI GAGTC 2 cut(s) 226, 247
SduI GDGCHC 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 2 cut(s) 94, 339
SsiI CCGC 1 cut(s) 21
TaaI ACNGT 1 cut(s) 352
TasI AATT 2 cut(s) 94, 339
TatI WGTACW 1 cut(s) 69
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 17, 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.