FvH4_1g06765

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0018343
Physical Location & Seq
Forward (+)
3564108 .. 3565864
1757 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06765.t1

Sequence Viewer

Length: 1593 bp
ATGTTTATGAAGTCAATTAACAAGGTGCGATCCAATCCCTACGATATTCAACTTTCAATTGAGATGGGGAGCAGTTACATCCCTACAAAGCGCTTCCAGGACACTACTTCTGAATCCAATAACAAACGGCACAGGAAGATACCTAGTCAAGAATATGTTGAAGTTGAACAAGAAGAGGAAGATCAACGTCAGACCCGTATTGGAAGACGAGCTTTCCCTGCAGATCATATGAGGAAGTTGAACCTGCCTTGCAAAAGGGTTCAAAGAGAGAAGGAACCGGAAGCAGCAGCCACACAAAATCACTATGAAGAGGAAGAGATCAGACGGGTTCGTAGACTAAACCCTAATGCTATTTCGGAGCACAATGGCACCGAAACTAAAGCCTTCGAAAAATCTTCAAGAAAATATGGTAGGAGTTACAACATGGCTGCTCCTTCCTTCAAGAGAAGCAGTAGTATTATTCACCTATCGAATTCAGACTGGGCAAGACTTGCTAATGATATTGTGTTTTCTATTCTTGATAAGTTGTTGGAACCTATTGACCATGCTCGTTTTGGTGTGGTACGTAAGGAATGGAAGTCTCATGCAAAACAGTATAACTGTGAAACCATGCCCTGGCTTAGGGTTCTCACCCCCATGCTACTGATCCCTACCGGATCTCATGGCTCCCATGGCCTAACTACAATGCTTTACAGCGTGTCTGAAAGAAAAATCTACAGAAAAATCAAGTTACCAGTGCCTAGTGATGATACGATCTACTGTGGTTTTGGTTGGATGGCTAAGTTACGTTATACAAATAATGGTAGACTAGCAATAACTCTGACGAACCCTTTCAGGAACTCAAATGATGATATTCATCTCCCTCTAATACCTCTAGTTTGGATTACTAGTGTAAAGCCTTCCGTGAAGATCATCTTGCCTACTGATCCCACTTTGGATCGGAACAATTATGTGGTTCTAGCCATATGTGGTTCTCAACTATTCTTCATCAGAGGAGGACAGAAACTTTGGACTTGTCCCATGTATGGCTTATACAGTACTTCAACATATTATGAAGGGCGAGTGTTCTCAGTTACTGCTCTTGGTACAATTGAGCTTGTTGTATCAGTACTCTGCCGCAAAAGTGACTACGGGATACATGTGGCAGGGCTTGGTGGTGAACGTTGTACTCAATCCCGTCTTGTTCAAACATATTTTGTAACATCAACAAAGGGAGATTTATTGGTTGTTAAGAGATTGTTGGAAAGAAAAAAGAAGCTGAGGTTCGAGGTCTTCAAGTTGGTTAAATCCATGGCACATAACATTGGGGATGAGGTCTTCAAGATAACTGAGGTACATAACATTGGGGACGAGGCTATTTTCGTGGGTAGCAATCAATCGGTATGTGTTTCGGCTTCAAAGTTTCCGGGGTACCAGCCAAATTCTATATACTACACGAATGATGTAGATCATGTAGTTGTGGGAGGACGAAGATCAGAAGACATAGGCATCTTTAATTTAGAGGATGGAACCATTACACAACATTGTCCTCAGCAGTTTGTGGAGGGGAAGGTGCAGGCAATTTGGATCACACCAGCTTTTCCAGAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

531

Amino Acids

60.62

Weight (kDa)

9.29

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 230 - 499 1.8e-35 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018343)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g06764 FvH4_1g06765
rosa_laevigata RLG00000016319
rosa_multiflora Rmu_sc0002174.1_g000002 Rmu_sc0002503.1_g000018 Rmu_sc0004296.1_g000013
rosa_samantha Rh2AG073000 Rh2BG073700 Rh2CG074800 Rh2DG071800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 252
Acc65I GGTACC 1 cut(s) 1410
AccB1I GGYRCC 2 cut(s) 368, 1410
AccB7I CCANNNNNTGG 1 cut(s) 615
AccI GTMKAC 2 cut(s) 334, 805
AciI CCGC 1 cut(s) 1117
AclI AACGTT 1 cut(s) 1162
AclWI GGATC 6 cut(s) 24, 640, 664, 920, 945, 1574
AcsI RAATTY 3 cut(s) 472, 1420, 1586
AfaI GTAC 7 cut(s) 564, 1039, 1087, 1110, 1168, 1335, 1412
AfeI AGCGCT 1 cut(s) 92
AfiI CCNNNNNNNGG 3 cut(s) 615, 621, 1025
AflIII ACRYGT 1 cut(s) 1138
AhlI ACTAGT 1 cut(s) 887
AjnI CCWGG 2 cut(s) 96, 614
AluBI AGCT 4 cut(s) 212, 1096, 1258, 1577
AluI AGCT 4 cut(s) 212, 1096, 1258, 1577
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 1 cut(s) 585
AlwI GGATC 6 cut(s) 24, 640, 664, 920, 945, 1574
AlwNI CAGNNNCTG 1 cut(s) 1076
Aor51HI AGCGCT 1 cut(s) 92
AoxI GGCC 1 cut(s) 673
ApeKI GCWGC 3 cut(s) 284, 287, 428
ApoI RAATTY 3 cut(s) 472, 1420, 1586
ArsI GACNNNNNNTTYG 2 cut(s) 990, 1022
Asp700I GAANNNNTTC 1 cut(s) 830
Asp718I GGTACC 1 cut(s) 1410
AspLEI GCGC 1 cut(s) 93
AsuC2I CCSGG 1 cut(s) 1407
AsuHPI GGTGA 3 cut(s) 455, 622, 1169
AsuII TTCGAA 1 cut(s) 387
BanI GGYRCC 2 cut(s) 368, 1410
BbsI GAAGAC 4 cut(s) 211, 1264, 1309, 1485
Bbv12I GWGCWC 1 cut(s) 363
BbvCI CCTCAGC 2 cut(s) 1259, 1530
BbvI GCAGC 3 cut(s) 296, 299, 415
BccI CCATC 3 cut(s) 58, 769, 1499
BceAI ACGGC 1 cut(s) 143
BciT130I CCWGG 2 cut(s) 98, 616
BciVI GTATCC 1 cut(s) 1128
BcnI CCSGG 1 cut(s) 1407
BcoDI GTCTC 1 cut(s) 585
BcuI ACTAGT 1 cut(s) 887
BfaI CTAG 7 cut(s) 144, 741, 809, 875, 888, 959, 1591
BfmI CTRYAG 2 cut(s) 219, 715
BfoI RGCGCY 1 cut(s) 94
BfuAI ACCTGC 1 cut(s) 252
BfuI GTATCC 1 cut(s) 1128
BisI GCNGC 4 cut(s) 285, 288, 429, 1117
BlsI GCNGC 4 cut(s) 286, 289, 430, 1118
BmcAI AGTACT 2 cut(s) 1039, 1110
Bme1390I CCNGG 3 cut(s) 98, 616, 1407
BmiI GGNNCC 6 cut(s) 276, 370, 534, 667, 1412, 1510
BmrFI CCNGG 3 cut(s) 98, 616, 1407
BmrI ACTGGG 1 cut(s) 490
BmsI GCATC 1 cut(s) 1497
BmuI ACTGGG 1 cut(s) 490
BpiI GAAGAC 4 cut(s) 211, 1264, 1309, 1485
Bpu10I CCTNAGC 3 cut(s) 620, 1259, 1530
Bpu14I TTCGAA 1 cut(s) 387
BpuMI CCSGG 1 cut(s) 1407
BsaAI YACGTR 1 cut(s) 566
BsaBI GATNNNNATC 2 cut(s) 855, 1446
BsaJI CCNNGG 4 cut(s) 614, 670, 1290, 1406
BsaWI WCCGGW 2 cut(s) 277, 653
Bsc4I CCNNNNNNNGG 3 cut(s) 615, 621, 1025
Bse1I ACTGG 2 cut(s) 485, 734
Bse8I GATNNNNATC 2 cut(s) 855, 1446
BseBI CCWGG 2 cut(s) 98, 616
BseDI CCNNGG 4 cut(s) 614, 670, 1290, 1406
BseGI GGATG 4 cut(s) 78, 780, 1315, 1510
BseJI GATNNNNATC 2 cut(s) 855, 1446
BseLI CCNNNNNNNGG 3 cut(s) 615, 621, 1025
BseMII CTCAG 4 cut(s) 1083, 1250, 1320, 1544
BseNI ACTGG 2 cut(s) 485, 734
BseRI GAGGAG 1 cut(s) 1008
BseXI GCAGC 3 cut(s) 296, 299, 415
BsgI GTGCAG 1 cut(s) 1574
BshFI GGCC 1 cut(s) 675
BshNI GGYRCC 2 cut(s) 368, 1410
BsiHKAI GWGCWC 1 cut(s) 363
BsiSI CCGG 3 cut(s) 278, 654, 1406
BslFI GGGAC 2 cut(s) 1002, 1361
BslI CCNNNNNNNGG 3 cut(s) 615, 621, 1025
BsmAI GTCTC 1 cut(s) 585
BsmFI GGGAC 2 cut(s) 1002, 1361
BsnI GGCC 1 cut(s) 675
Bsp119I TTCGAA 1 cut(s) 387
Bsp1286I GDGCHC 1 cut(s) 363
Bsp19I CCATGG 2 cut(s) 670, 1290
BspACI CCGC 1 cut(s) 1117
BspANI GGCC 1 cut(s) 675
BspCNI CTCAG 4 cut(s) 1082, 1251, 1321, 1543
BspLI GGNNCC 6 cut(s) 276, 370, 534, 667, 1412, 1510
BspMAI CTGCAG 1 cut(s) 223
BspMI ACCTGC 1 cut(s) 252
BspPI GGATC 6 cut(s) 24, 640, 664, 920, 945, 1574
BspT104I TTCGAA 1 cut(s) 387
BspT107I GGYRCC 2 cut(s) 368, 1410
BsrI ACTGG 2 cut(s) 485, 734
BssECI CCNNGG 4 cut(s) 614, 670, 1290, 1406
BssT1I CCWWGG 2 cut(s) 670, 1290
Bst2UI CCWGG 2 cut(s) 98, 616
Bst4CI ACNGT 4 cut(s) 594, 602, 761, 1037
Bst6I CTCTTC 3 cut(s) 168, 303, 309
BstAPI GCANNNNNTGC 1 cut(s) 491
BstBAI YACGTR 1 cut(s) 566
BstBI TTCGAA 1 cut(s) 387
BstC8I GCNNGC 1 cut(s) 1557
BstDEI CTNAG 6 cut(s) 620, 780, 1069, 1259, 1329, 1530
BstDSI CCRYGG 2 cut(s) 670, 1290
BstENI CCTNNNNNAGG 1 cut(s) 619
BstF5I GGATG 4 cut(s) 78, 780, 1315, 1510
BstH2I RGCGCY 1 cut(s) 94
BstHHI GCGC 1 cut(s) 93
BstMAI GTCTC 1 cut(s) 585
BstMWI GCNNNNNNNGC 3 cut(s) 218, 491, 672
BstNI CCWGG 2 cut(s) 98, 616
BstNSI RCATGY 1 cut(s) 1142
BstSCI CCNGG 3 cut(s) 96, 614, 1405
BstSFI CTRYAG 2 cut(s) 219, 715
BstSNI TACGTA 1 cut(s) 566
BstV1I GCAGC 3 cut(s) 296, 299, 415
BstV2I GAAGAC 4 cut(s) 211, 1264, 1309, 1485
BstX2I RGATCY 1 cut(s) 656
BstYI RGATCY 1 cut(s) 656
BsuI GTATCC 1 cut(s) 1128
BsuRI GGCC 1 cut(s) 675
BtgI CCRYGG 2 cut(s) 670, 1290
BtsCI GGATG 4 cut(s) 78, 780, 1315, 1510
BtsIMutI CAGTG 1 cut(s) 741
BveI ACCTGC 1 cut(s) 252
Cac8I GCNNGC 1 cut(s) 1557
CaiI CAGNNNCTG 1 cut(s) 1076
CfoI GCGC 1 cut(s) 93
Csp6I GTAC 7 cut(s) 563, 1038, 1086, 1109, 1167, 1334, 1411
CviQI GTAC 7 cut(s) 563, 1038, 1086, 1109, 1167, 1334, 1411
DdeI CTNAG 6 cut(s) 620, 780, 1069, 1259, 1329, 1530
Eam1104I CTCTTC 3 cut(s) 168, 303, 309
EarI CTCTTC 3 cut(s) 168, 303, 309
Eco105I TACGTA 1 cut(s) 566
Eco130I CCWWGG 2 cut(s) 670, 1290
Eco47III AGCGCT 1 cut(s) 92
EcoNI CCTNNNNNAGG 1 cut(s) 619
EcoRI GAATTC 2 cut(s) 472, 1586
EcoRII CCWGG 2 cut(s) 96, 614
EcoT14I CCWWGG 2 cut(s) 670, 1290
ErhI CCWWGG 2 cut(s) 670, 1290
FalI AAGNNNNNCTT 4 cut(s) 196, 228, 899, 931
FaqI GGGAC 2 cut(s) 1002, 1361
FauNDI CATATG 2 cut(s) 228, 965
FblI GTMKAC 2 cut(s) 334, 805
Fnu4HI GCNGC 4 cut(s) 285, 288, 429, 1117
FokI GGATG 4 cut(s) 65, 787, 1322, 1517
Fsp4HI GCNGC 4 cut(s) 285, 288, 429, 1117
FspBI CTAG 7 cut(s) 144, 741, 809, 875, 888, 959, 1591
GlaI GCGC 1 cut(s) 92
GluI GCNGC 4 cut(s) 285, 288, 429, 1117
HaeII RGCGCY 1 cut(s) 94
HaeIII GGCC 1 cut(s) 675
HapII CCGG 3 cut(s) 278, 654, 1406
HhaI GCGC 1 cut(s) 93
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HinfI GANTC 1 cut(s) 113
HpaII CCGG 3 cut(s) 278, 654, 1406
HphI GGTGA 3 cut(s) 455, 622, 1169
Hpy166II GTNNAC 3 cut(s) 335, 806, 1160
Hpy188III TCNNGA 7 cut(s) 149, 399, 442, 518, 835, 1321, 1583
Hpy8I GTNNAC 3 cut(s) 335, 806, 1160
HpyAV CCTTC 7 cut(s) 265, 394, 444, 448, 909, 1049, 1543
HpyCH4III ACNGT 4 cut(s) 594, 602, 761, 1037
HpyCH4IV ACGT 4 cut(s) 187, 565, 787, 1162
HpyCH4V TGCA 4 cut(s) 221, 252, 587, 1555
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 491, 672
HpyF3I CTNAG 6 cut(s) 620, 780, 1069, 1259, 1329, 1530
HpySE526I ACGT 4 cut(s) 187, 565, 787, 1162
HspAI GCGC 1 cut(s) 91
KpnI GGTACC 1 cut(s) 1414
LmnI GCTCC 4 cut(s) 69, 358, 436, 671
Lsp1109I GCAGC 3 cut(s) 296, 299, 415
LweI GCATC 1 cut(s) 1497
MaeI CTAG 7 cut(s) 144, 741, 809, 875, 888, 959, 1591
MaeII ACGT 4 cut(s) 187, 565, 787, 1162
MaeIII GTNAC 7 cut(s) 74, 416, 729, 783, 1072, 1124, 1198
MfeI CAATTG 2 cut(s) 57, 1089
MflI RGATCY 1 cut(s) 656
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 9 cut(s) 15, 57, 472, 946, 1089, 1420, 1495, 1560, 1586
MmeI TCCRAC 3 cut(s) 510, 752, 1221
MroXI GAANNNNTTC 1 cut(s) 830
MseI TTAA 4 cut(s) 18, 1230, 1284, 1494
MslI CAYNNNNRTG 1 cut(s) 635
MspI CCGG 3 cut(s) 278, 654, 1406
MspR9I CCNGG 3 cut(s) 98, 616, 1407
MunI CAATTG 2 cut(s) 57, 1089
MvaI CCWGG 2 cut(s) 98, 616
MwoI GCNNNNNNNGC 3 cut(s) 218, 491, 672
NciI CCSGG 1 cut(s) 1407
NcoI CCATGG 2 cut(s) 670, 1290
NdeI CATATG 2 cut(s) 228, 965
NlaIV GGNNCC 6 cut(s) 276, 370, 534, 667, 1412, 1510
NmuCI GTSAC 1 cut(s) 1124
NspI RCATGY 1 cut(s) 1142
NspV TTCGAA 1 cut(s) 387
PciI ACATGT 1 cut(s) 1138
PcsI WCGNNNNNNNCGW 1 cut(s) 193
PdmI GAANNNNTTC 1 cut(s) 830
PfeI GAWTC 1 cut(s) 113
PflMI CCANNNNNTGG 1 cut(s) 615
PfoI TCCNGGA 1 cut(s) 96
PkrI GCNGC 4 cut(s) 286, 289, 430, 1118
Ppu21I YACGTR 1 cut(s) 566
PscI ACATGT 1 cut(s) 1138
Psp1406I AACGTT 1 cut(s) 1162
Psp6I CCWGG 2 cut(s) 96, 614
PspGI CCWGG 2 cut(s) 96, 614
PspN4I GGNNCC 6 cut(s) 276, 370, 534, 667, 1412, 1510
PstI CTGCAG 1 cut(s) 223
PstNI CAGNNNCTG 1 cut(s) 1076
PsuI RGATCY 1 cut(s) 656
RsaI GTAC 7 cut(s) 564, 1039, 1087, 1110, 1168, 1335, 1412
RsaNI GTAC 7 cut(s) 563, 1038, 1086, 1109, 1167, 1334, 1411
RseI CAYNNNNRTG 1 cut(s) 635
SaqAI TTAA 4 cut(s) 18, 1230, 1284, 1494
SatI GCNGC 4 cut(s) 285, 288, 429, 1117
ScaI AGTACT 2 cut(s) 1039, 1110
ScrFI CCNGG 3 cut(s) 98, 616, 1407
SduI GDGCHC 1 cut(s) 363
SfaNI GCATC 1 cut(s) 1497
SfcI CTRYAG 2 cut(s) 219, 715
SfuI TTCGAA 1 cut(s) 387
SmiMI CAYNNNNRTG 1 cut(s) 635
SnaBI TACGTA 1 cut(s) 566
SpeI ACTAGT 1 cut(s) 887
Sse9I AATT 9 cut(s) 15, 57, 472, 946, 1089, 1420, 1495, 1560, 1586
SsiI CCGC 1 cut(s) 1117
SspMI CTAG 7 cut(s) 144, 741, 809, 875, 888, 959, 1591
StyD4I CCNGG 3 cut(s) 96, 614, 1405
StyI CCWWGG 2 cut(s) 670, 1290
TaaI ACNGT 4 cut(s) 594, 602, 761, 1037
TaiI ACGT 4 cut(s) 190, 568, 790, 1165
TaqI TCGA 3 cut(s) 387, 470, 1266
TasI AATT 9 cut(s) 15, 57, 472, 946, 1089, 1420, 1495, 1560, 1586
TatI WGTACW 3 cut(s) 1037, 1108, 1166
TauI GCSGC 1 cut(s) 1119
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 4 cut(s) 18, 1230, 1284, 1494
Tru9I TTAA 4 cut(s) 18, 1230, 1284, 1494
TscAI CASTG 1 cut(s) 741
TseFI GTSAC 1 cut(s) 1124
TseI GCWGC 3 cut(s) 284, 287, 428
Tsp45I GTSAC 1 cut(s) 1124
TspDTI ATGAA 5 cut(s) 23, 321, 845, 976, 1068
TspGWI ACGGA 1 cut(s) 892
TspRI CASTG 1 cut(s) 741
Van91I CCANNNNNTGG 1 cut(s) 615
XagI CCTNNNNNAGG 1 cut(s) 619
XapI RAATTY 3 cut(s) 472, 1420, 1586
XceI RCATGY 1 cut(s) 1142
XcmI CCANNNNNNNNNTGG 1 cut(s) 551
XmiI GTMKAC 2 cut(s) 334, 805
XmnI GAANNNNTTC 1 cut(s) 830
XspI CTAG 7 cut(s) 144, 741, 809, 875, 888, 959, 1591
ZrmI AGTACT 2 cut(s) 1039, 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.