FvH4_1g07990

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011798
Physical Location & Seq
Forward (+)
4216047 .. 4221998
5952 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g07990.t3

Sequence Viewer

Length: 1614 bp
ATGGAGAAGCAGAACGAGTGGGAGGGAATGGAGGAGGACCACCAGCGAGGCAAGGCGAGGCCCAAAGGTGGGGCCGGGGCGGGAGACGACGGTGGTGGTGGTGAGGTCGGGTCGAGCTTGACCCTGGAGAGGGTGGCTGCGGCCAAGCAGTTCATAGAGAGCCACTTCAAGGCTCAGATGAAGCACATCCAGGATCGTAAGCTCAGACGCTCGGTGCTGGAAAAGAAGTTGGCTTCTGAACGTGTACCAGAGGAGGAACAGATCAATCTATTGAAGGATCTGGAACGCAAAGAGACTGAATATATGCGTCTTAAGAGGCACAAGATTTGTGTTGAGGACTTCGACCTTCTCACCATAATTGGGAGAGGTGCCTTTGGAGAGGTCAGATTGTGTCGCGAGAAGATATCTGGCACCATTTTTGCCATGAAAAAGTTGAAGAAGTCAGAAATGCTCAGCAGGGGACAGGTCGAACATGTCAGAGCCGAAAGGAATTTGCTTGCAGAAGTTGCCAGTCACTGCATTGTGAAACTCTACTATTCATTTCAAGACTCTGAATACTTGTATCTAATTATGGAATATCTACCTGGTGGAGACATGATGACTTTGCTCATAAGAGAGGAGACTTTGACTGAAACTGTTTCCAGATTTTATATTGCTCAAAGTGTTTTGGCAATAGAATCTATTCATAAGCATAACTATATTCACAGAGATATAAAACCAGACAATCTTCTGTTAGACCAAAATGGTCACATGAAGCTCTCTGATTTTGGTCTGTGCAAGCCTCTTGACTGCTCAAATTTATCTTCCATAAATGAACATGAAGTGCTCGATGATGAAAACTTGCATGAGACAATGGATATCGATGAATCATCCCCAGAGACCAAAAATGGGAGGCGCTGGAAAAGCCCACTTGAGCAACTTCAGCATTGGCAGATAAACAGGAGAACACTGGCATATTCAACAGTTGGCACACCGGATTACATTGCTCCAGAAGTATTATTGAAGAAAGGATATGGCATGGAGTGTGATTGGTGGTCACTGGGTGCAATAATGTATGAGATGCTTGTTGGTTATCCCCCGTTTTACTCTGACGATCCGGTAACAACATGCAGAAAGATTGTGCATTGGAAAAATCACTTGAAATTTCCTGTGGAGGCAAGGTTGACACCTGAAGCAAAGGATCTGATTAGTAGGTTTCTGTGTGATGTTGAACATAGGCTTCGTACAGCAGACCAAATTAAGGCTCATCCTTGGTTCAGAGATGTTCAGTGGGACAGACTTTATGAAATGGAGGCAGCATTTAAACCGGAGGTCAATGGGGAACTCGATACTCAAAATTTTATGAAATATGATGAGGTAGATGCACCAGCGTCTGGAAGAATTGGATCTGGAATTATGAGAAAGATGTTGTTGACTCCTAAGGATCTTAGCTTTGTTGGCTATACATACAAAAATTTTGAGGCTGTCAAAGGTTTAAAGAGGAGTACATCACTAAATCGGTCCTCCATTGACTCTGCAAACAGTGACTCTGTACTGGACTACTCCAAAAAGTATTCAGTAGATGACATGGAAGCTCAGGTGCTTGCTGATTCAGGGGATATCATGTCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_C

Protein Analysis

538

Amino Acids

61.76

Weight (kDa)

5.8

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 15 - 164 3.9e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 16 - 162 7.7e-23 Protein tyrosine and serine/threonine kinase
ABC1 PF03109 86 - 162 9e-07 ABC1 atypical kinase-like domain
Pkinase PF00069 212 - 318 5.4e-22 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 368, 410
AccB7I CCANNNNNTGG 1 cut(s) 1373
AccII CGCG 1 cut(s) 396
AciI CCGC 2 cut(s) 80, 140
AclWI GGATC 6 cut(s) 201, 285, 1088, 1188, 1393, 1431
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 5 cut(s) 490, 796, 1142, 1336, 1453
AcuI CTGAAG 2 cut(s) 905, 1191
AdeI CACNNNGTG 1 cut(s) 1043
AfaI GTAC 4 cut(s) 246, 1225, 1486, 1533
AfiI CCNNNNNNNGG 9 cut(s) 68, 69, 129, 130, 169, 360, 888, 1240, 1373
AflII CTTAAG 1 cut(s) 311
AflIII ACRYGT 2 cut(s) 241, 472
AgsI TTSAA 8 cut(s) 169, 274, 436, 545, 960, 1003, 1141, 1211
AjnI CCWGG 3 cut(s) 123, 189, 583
AluBI AGCT 5 cut(s) 117, 202, 757, 1431, 1574
AluI AGCT 5 cut(s) 117, 202, 757, 1431, 1574
Alw21I GWGCWC 1 cut(s) 828
Alw26I GTCTC 6 cut(s) 78, 287, 585, 614, 842, 872
AlwI GGATC 6 cut(s) 201, 285, 1088, 1188, 1393, 1431
AlwNI CAGNNNCTG 2 cut(s) 516, 1373
AoxI GGCC 3 cut(s) 59, 72, 141
ApeKI GCWGC 2 cut(s) 137, 1295
ApoI RAATTY 5 cut(s) 490, 796, 1142, 1336, 1453
Asp700I GAANNNNTTC 1 cut(s) 681
AspLEI GCGC 1 cut(s) 897
AspS9I GGNCC 4 cut(s) 37, 60, 72, 1500
AsuC2I CCSGG 1 cut(s) 76
AsuHPI GGTGA 2 cut(s) 113, 343
AvaII GGWCC 2 cut(s) 37, 1500
AxyI CCTNAGG 1 cut(s) 1419
BanI GGYRCC 2 cut(s) 368, 410
Bbv12I GWGCWC 1 cut(s) 828
BbvI GCAGC 2 cut(s) 124, 1307
BciT130I CCWGG 3 cut(s) 125, 191, 585
BcnI CCSGG 1 cut(s) 76
BcoDI GTCTC 6 cut(s) 78, 287, 585, 614, 842, 872
BfoI RGCGCY 1 cut(s) 898
BfrI CTTAAG 1 cut(s) 311
BisI GCNGC 3 cut(s) 138, 141, 1296
BlpI GCTNAGC 1 cut(s) 452
BlsI GCNGC 3 cut(s) 139, 142, 1297
Bme1390I CCNGG 4 cut(s) 76, 125, 191, 585
Bme18I GGWCC 2 cut(s) 37, 1500
BmgT120I GGNCC 4 cut(s) 37, 60, 72, 1500
BmiI GGNNCC 3 cut(s) 73, 370, 412
BmrFI CCNGG 4 cut(s) 76, 125, 191, 585
BmrI ACTGGG 1 cut(s) 1049
BmsI GCATC 2 cut(s) 1050, 1351
BmuI ACTGGG 1 cut(s) 1049
BpmI CTGGAG 2 cut(s) 146, 972
Bpu10I CCTNAGC 1 cut(s) 1575
Bpu1102I GCTNAGC 1 cut(s) 452
BpuEI CTTGAG 1 cut(s) 932
BpuMI CCSGG 1 cut(s) 76
Bsa29I ATCGAT 1 cut(s) 861
BsaI GGTCTC 1 cut(s) 872
BsaJI CCNNGG 3 cut(s) 75, 123, 1250
BsaWI WCCGGW 3 cut(s) 973, 1096, 1306
BsaXI ACNNNNNCTCC 2 cut(s) 1145, 1175
Bsc4I CCNNNNNNNGG 9 cut(s) 68, 69, 129, 130, 169, 360, 888, 1240, 1373
Bse1I ACTGG 4 cut(s) 510, 954, 1044, 1539
Bse21I CCTNAGG 1 cut(s) 1419
Bse3DI GCAATG 1 cut(s) 981
BseBI CCWGG 3 cut(s) 125, 191, 585
BseCI ATCGAT 1 cut(s) 861
BseDI CCNNGG 3 cut(s) 75, 123, 1250
BseGI GGATG 3 cut(s) 186, 869, 1246
BseLI CCNNNNNNNGG 9 cut(s) 68, 69, 129, 130, 169, 360, 888, 1240, 1373
BseMI GCAATG 1 cut(s) 981
BseMII CTCAG 4 cut(s) 188, 217, 466, 1589
BseNI ACTGG 4 cut(s) 510, 954, 1044, 1539
BseRI GAGGAG 4 cut(s) 47, 266, 632, 1495
BseXI GCAGC 2 cut(s) 124, 1307
Bsh1236I CGCG 1 cut(s) 396
BshFI GGCC 3 cut(s) 61, 74, 143
BshNI GGYRCC 2 cut(s) 368, 410
BshVI ATCGAT 1 cut(s) 861
BsiHKAI GWGCWC 1 cut(s) 828
BsiSI CCGG 4 cut(s) 75, 974, 1097, 1307
BslFI GGGAC 2 cut(s) 474, 1286
BslI CCNNNNNNNGG 9 cut(s) 68, 69, 129, 130, 169, 360, 888, 1240, 1373
BsmAI GTCTC 6 cut(s) 78, 287, 585, 614, 842, 872
BsmBI CGTCTC 1 cut(s) 78
BsmFI GGGAC 2 cut(s) 474, 1286
BsnI GGCC 3 cut(s) 61, 74, 143
Bso31I GGTCTC 1 cut(s) 872
Bsp1286I GDGCHC 1 cut(s) 828
Bsp143I GATC 7 cut(s) 193, 261, 277, 1093, 1180, 1385, 1423
Bsp1720I GCTNAGC 1 cut(s) 452
Bsp68I TCGCGA 1 cut(s) 396
BspACI CCGC 2 cut(s) 80, 140
BspANI GGCC 3 cut(s) 61, 74, 143
BspCNI CTCAG 4 cut(s) 187, 216, 465, 1588
BspDI ATCGAT 1 cut(s) 861
BspFNI CGCG 1 cut(s) 396
BspLI GGNNCC 3 cut(s) 73, 370, 412
BspPI GGATC 6 cut(s) 201, 285, 1088, 1188, 1393, 1431
BspT107I GGYRCC 2 cut(s) 368, 410
BspTI CTTAAG 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 872
BsrDI GCAATG 1 cut(s) 981
BsrI ACTGG 4 cut(s) 510, 954, 1044, 1539
BssECI CCNNGG 3 cut(s) 75, 123, 1250
BssMI GATC 7 cut(s) 193, 261, 277, 1093, 1180, 1385, 1423
BssT1I CCWWGG 1 cut(s) 1250
Bst2UI CCWGG 3 cut(s) 125, 191, 585
Bst4CI ACNGT 4 cut(s) 92, 637, 964, 1523
BstAFI CTTAAG 1 cut(s) 311
BstAPI GCANNNNNTGC 1 cut(s) 506
BstC8I GCNNGC 3 cut(s) 498, 779, 1584
BstDEI CTNAG 6 cut(s) 174, 203, 452, 1419, 1427, 1575
BstF5I GGATG 3 cut(s) 186, 869, 1246
BstFNI CGCG 1 cut(s) 396
BstH2I RGCGCY 1 cut(s) 898
BstHHI GCGC 1 cut(s) 897
BstKTI GATC 7 cut(s) 196, 264, 280, 1096, 1183, 1388, 1426
BstMAI GTCTC 6 cut(s) 78, 287, 585, 614, 842, 872
BstMBI GATC 7 cut(s) 193, 261, 277, 1093, 1180, 1385, 1423
BstMWI GCNNNNNNNGC 4 cut(s) 506, 903, 922, 1437
BstNI CCWGG 3 cut(s) 125, 191, 585
BstNSI RCATGY 2 cut(s) 476, 1110
BstSCI CCNGG 4 cut(s) 74, 123, 189, 583
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 2 cut(s) 124, 1307
BstX2I RGATCY 4 cut(s) 277, 1180, 1385, 1423
BstYI RGATCY 4 cut(s) 277, 1180, 1385, 1423
Bsu15I ATCGAT 1 cut(s) 861
Bsu36I CCTNAGG 1 cut(s) 1419
BsuRI GGCC 3 cut(s) 61, 74, 143
BsuTUI ATCGAT 1 cut(s) 861
BtsCI GGATG 3 cut(s) 186, 869, 1246
BtsI GCAGTG 1 cut(s) 514
BtsIMutI CAGTG 5 cut(s) 514, 947, 1037, 1274, 1528
BtuMI TCGCGA 1 cut(s) 396
Cac8I GCNNGC 3 cut(s) 498, 779, 1584
CaiI CAGNNNCTG 2 cut(s) 516, 1373
CfoI GCGC 1 cut(s) 897
Cfr13I GGNCC 4 cut(s) 37, 60, 72, 1500
ClaI ATCGAT 1 cut(s) 861
CseI GACGC 3 cut(s) 216, 296, 1359
CsiI ACCWGGT 1 cut(s) 583
Csp6I GTAC 4 cut(s) 245, 1224, 1485, 1532
CviQI GTAC 4 cut(s) 245, 1224, 1485, 1532
DdeI CTNAG 6 cut(s) 174, 203, 452, 1419, 1427, 1575
DpnI GATC 7 cut(s) 195, 263, 279, 1095, 1182, 1387, 1425
DpnII GATC 7 cut(s) 193, 261, 277, 1093, 1180, 1385, 1423
DraI TTTAAA 2 cut(s) 1303, 1476
DraIII CACNNNGTG 1 cut(s) 1043
EaeI YGGCCR 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 1250
Eco31I GGTCTC 1 cut(s) 872
Eco32I GATATC 3 cut(s) 405, 859, 1600
Eco47I GGWCC 2 cut(s) 37, 1500
Eco57I CTGAAG 2 cut(s) 905, 1191
Eco81I CCTNAGG 1 cut(s) 1419
EcoRII CCWGG 3 cut(s) 123, 189, 583
EcoRV GATATC 3 cut(s) 405, 859, 1600
EcoT14I CCWWGG 1 cut(s) 1250
ErhI CCWWGG 1 cut(s) 1250
Esp3I CGTCTC 1 cut(s) 78
FaqI GGGAC 2 cut(s) 474, 1286
FauI CCCGC 1 cut(s) 73
Fnu4HI GCNGC 3 cut(s) 138, 141, 1296
FokI GGATG 3 cut(s) 173, 856, 1233
Fsp4HI GCNGC 3 cut(s) 138, 141, 1296
GlaI GCGC 1 cut(s) 896
GluI GCNGC 3 cut(s) 138, 141, 1296
GsuI CTGGAG 2 cut(s) 146, 972
HaeII RGCGCY 1 cut(s) 898
HaeIII GGCC 3 cut(s) 61, 74, 143
HapII CCGG 4 cut(s) 75, 974, 1097, 1307
HgaI GACGC 3 cut(s) 216, 296, 1359
HhaI GCGC 1 cut(s) 897
Hin6I GCGC 1 cut(s) 895
HinP1I GCGC 1 cut(s) 895
HincII GTYRAC 2 cut(s) 1164, 1413
HindII GTYRAC 2 cut(s) 1164, 1413
HinfI GANTC 7 cut(s) 548, 677, 866, 1414, 1511, 1526, 1589
HpaII CCGG 4 cut(s) 75, 974, 1097, 1307
HphI GGTGA 2 cut(s) 113, 343
Hpy166II GTNNAC 3 cut(s) 245, 1164, 1413
Hpy188III TCNNGA 8 cut(s) 281, 395, 545, 642, 785, 989, 1374, 1389
Hpy8I GTNNAC 3 cut(s) 245, 1164, 1413
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 268, 356
HpyCH4III ACNGT 4 cut(s) 92, 637, 964, 1523
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 9 cut(s) 500, 519, 777, 844, 1046, 1110, 1123, 1364, 1517
HpyF10VI GCNNNNNNNGC 4 cut(s) 506, 903, 922, 1437
HpyF3I CTNAG 6 cut(s) 174, 203, 452, 1419, 1427, 1575
HpySE526I ACGT 1 cut(s) 241
HspAI GCGC 1 cut(s) 895
Kzo9I GATC 7 cut(s) 193, 261, 277, 1093, 1180, 1385, 1423
LmnI GCTCC 1 cut(s) 991
Lsp1109I GCAGC 2 cut(s) 124, 1307
LweI GCATC 2 cut(s) 1050, 1351
MabI ACCWGGT 1 cut(s) 583
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 5 cut(s) 512, 746, 1035, 1099, 1523
MalI GATC 7 cut(s) 195, 263, 279, 1095, 1182, 1387, 1425
MboI GATC 7 cut(s) 193, 261, 277, 1093, 1180, 1385, 1423
MboII GAAGA 6 cut(s) 412, 448, 719, 795, 1015, 1389
MflI RGATCY 4 cut(s) 277, 1180, 1385, 1423
MhlI GDGCHC 1 cut(s) 828
MlyI GAGTC 4 cut(s) 542, 1408, 1505, 1520
MroXI GAANNNNTTC 1 cut(s) 681
MseI TTAA 4 cut(s) 312, 1239, 1302, 1475
MspCI CTTAAG 1 cut(s) 311
MspI CCGG 4 cut(s) 75, 974, 1097, 1307
MspR9I CCNGG 4 cut(s) 76, 125, 191, 585
MvaI CCWGG 3 cut(s) 125, 191, 585
MvnI CGCG 1 cut(s) 396
MwoI GCNNNNNNNGC 4 cut(s) 506, 903, 922, 1437
NciI CCSGG 1 cut(s) 76
NdeII GATC 7 cut(s) 193, 261, 277, 1093, 1180, 1385, 1423
NlaIV GGNNCC 3 cut(s) 73, 370, 412
NmuCI GTSAC 4 cut(s) 512, 746, 1035, 1523
NruI TCGCGA 1 cut(s) 396
NspI RCATGY 2 cut(s) 476, 1110
PciI ACATGT 1 cut(s) 472
PdmI GAANNNNTTC 1 cut(s) 681
PfeI GAWTC 3 cut(s) 677, 866, 1589
PflMI CCANNNNNTGG 1 cut(s) 1373
PfoI TCCNGGA 1 cut(s) 189
PkrI GCNGC 3 cut(s) 139, 142, 1297
PleI GAGTC 4 cut(s) 542, 1408, 1505, 1520
PpsI GAGTC 4 cut(s) 542, 1408, 1505, 1520
PscI ACATGT 1 cut(s) 472
Psp6I CCWGG 3 cut(s) 123, 189, 583
PspGI CCWGG 3 cut(s) 123, 189, 583
PspN4I GGNNCC 3 cut(s) 73, 370, 412
PspPI GGNCC 4 cut(s) 37, 60, 72, 1500
PstNI CAGNNNCTG 2 cut(s) 516, 1373
PsuI RGATCY 4 cut(s) 277, 1180, 1385, 1423
RruI TCGCGA 1 cut(s) 396
RsaI GTAC 4 cut(s) 246, 1225, 1486, 1533
RsaNI GTAC 4 cut(s) 245, 1224, 1485, 1532
SaqAI TTAA 4 cut(s) 312, 1239, 1302, 1475
SatI GCNGC 3 cut(s) 138, 141, 1296
Sau3AI GATC 7 cut(s) 193, 261, 277, 1093, 1180, 1385, 1423
Sau96I GGNCC 4 cut(s) 37, 60, 72, 1500
SchI GAGTC 4 cut(s) 542, 1408, 1505, 1520
ScrFI CCNGG 4 cut(s) 76, 125, 191, 585
SduI GDGCHC 1 cut(s) 828
SexAI ACCWGGT 1 cut(s) 583
SfaNI GCATC 2 cut(s) 1050, 1351
SinI GGWCC 2 cut(s) 37, 1500
SmlI CTYRAG 2 cut(s) 311, 911
SmoI CTYRAG 2 cut(s) 311, 911
SsiI CCGC 2 cut(s) 80, 140
StyD4I CCNGG 4 cut(s) 74, 123, 189, 583
StyI CCWWGG 1 cut(s) 1250
TaaI ACNGT 4 cut(s) 92, 637, 964, 1523
TaiI ACGT 1 cut(s) 244
TaqI TCGA 6 cut(s) 113, 342, 468, 828, 861, 1326
TaqII GACCGA 1 cut(s) 1488
TatI WGTACW 2 cut(s) 1484, 1531
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 3 cut(s) 677, 866, 1589
Tru1I TTAA 4 cut(s) 312, 1239, 1302, 1475
Tru9I TTAA 4 cut(s) 312, 1239, 1302, 1475
TscAI CASTG 5 cut(s) 521, 954, 1044, 1274, 1528
TseFI GTSAC 4 cut(s) 512, 746, 1035, 1523
TseI GCWGC 2 cut(s) 137, 1295
Tsp45I GTSAC 4 cut(s) 512, 746, 1035, 1523
TspRI CASTG 5 cut(s) 521, 954, 1044, 1274, 1528
Van91I CCANNNNNTGG 1 cut(s) 1373
Vha464I CTTAAG 1 cut(s) 311
VpaK11BI GGWCC 2 cut(s) 37, 1500
XapI RAATTY 5 cut(s) 490, 796, 1142, 1336, 1453
XceI RCATGY 2 cut(s) 476, 1110
XmnI GAANNNNTTC 1 cut(s) 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.