Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0011798

Physical Location & Seq

Genomic Coordinates Forward (+)

4676085 .. 4679326

Gene Structure 3242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g06730.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGAGAACCATAAGCAGATGGAGAAGGACGAGGCGGGGCGCATGGCGGTGGAGGAGGAGGACGGGCAGGTGGGGTCCAGCCTGACCCTGGAGAGGGTGGCTGCGGCCAAGCAGTTCATAGAGAGCCACTACAAGGCTCAGATGAAGCACATCCAGGATCGTAAACAGAGGCGCTCAGTGCTGGAAAAGAAGTTGGCATCTGAACATGTACCGGAGGAGGAACAGATCAATTTGCTGAAGGATTTGGAGCTCACAGAGACGCAATACATACGCCTTAAAAGGCACAAAATTTGTGTGGATGATTTTGACCTTCTGGCCATAATTGGGAGAGGGGCCTTTGGAGAGGTTAGACTGTGCCGGGAGAAGAAATCTGGCAACATTTATGCCATGAAAAAGTTGAAGAAGTCAGAAATGCTCAGTAGGGGGCAGGTTGAACATGTTAGAGCCGAAAGGAATTTGCTTGCAGAGGTTGCCAGTCATTGCATTGTGAAACTTTACTATTCCTTTCAAGATGCTGAATACTTGTATCTGGTCATGGAATATCTACCTGGTGGCGACATGATGACTTTGCTTATTAGGGAAGAGTCTTTGACTGAAACTGTCGCAAGATTTTACATTGCGCAAAGTGTTTTGGCCATAGAATCTATTCATAAACATAACTATATTCACAGAGACATAAAACCAGACAATCTCCTGTTAGACAAAAATGGTCACATGAAGCTCTCTGATTTTGGTCTTTGCAAGCCTCTCGACTGCTCGAATTTATCTTCCATAAATGAAAATGAAGTGCTTGATGATGAGAACCTGAATGAGGCAATGGATATTGATGAATCCTTCCCTCAAACAAAAAATGGGAGGCGCTGGAAAAGCCCGCTTGAGCAACTTCAGCATTGGCAGATAAACAGGAGAAAATTGGCATTTTCGACAGTTGGAACTCCAGATTACATCGCTCCAGAGGTATTGTTGAAGAAGGGATACGGCATGGAGTGTGACTGGTGGTCACTTGGTGCGATAATGTATGAGATGCTTGTTGGTTATCCTCCATTTTACTCTGATCGATCCCGTTACAACATGCAGAAAGATTGTACATTGGAAAAATCACTTGAAATTTCCTGTCGAGGCACGGTTGACACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_C

Protein Analysis

379

Amino Acids

43.84

Weight (kDa)

5.91

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19400
fragaria_vesca	FvH4_1g07990 FvH4_1g07990
malus_domestica	MD02G1084400.v1.1 MD15G1211700.v1.1
prunus_persica	Prupe.7G205000_v2.0.a1 Prupe.7G205000_v2.0.a1 Prupe.7G205000_v2.0.a1
pyrus_communis	pycom02g06730 pycom15g18820
rosa_chinensis	RchiOBHm_Chr2g0094031
rosa_laevigata	RLG00000016447
rosa_multiflora	Rmu_ssc0000369.1_g000006
rosa_roxburghii	Rroxscaffold_2G00147540
rosa_rugosa	Rorug02G0040500
rosa_samantha	Rh2AG087900 Rh2BG088100 Rh2CG090400 Rh2DG087100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	58
Acc16I	TGCGCA	1 cut(s)	621
Acc36I	ACCTGC	2 cut(s)	58, 418
AciI	CCGC	4 cut(s)	35, 47, 104, 872
AclWI	GGATC	2 cut(s)	165, 1053
AcoI	YGGCCR	3 cut(s)	105, 315, 633
AcsI	RAATTY	4 cut(s)	288, 454, 760, 1107
AcuI	CTGAAG	2 cut(s)	257, 869
AdeI	CACNNNGTG	1 cut(s)	1007
AfaI	GTAC	2 cut(s)	210, 1087
AfiI	CCNNNNNNNGG	6 cut(s)	88, 93, 94, 133, 324, 811
AflIII	ACRYGT	2 cut(s)	205, 436
AgsI	TTSAA	5 cut(s)	400, 434, 509, 967, 1106
AhdI	GACNNNNNGTC	1 cut(s)	997
AjnI	CCWGG	3 cut(s)	87, 153, 547
AluBI	AGCT	2 cut(s)	250, 721
AluI	AGCT	2 cut(s)	250, 721
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	2 cut(s)	251, 666
AlwI	GGATC	2 cut(s)	165, 1053
AoxI	GGCC	4 cut(s)	105, 315, 333, 633
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	4 cut(s)	288, 454, 760, 1107
Asp700I	GAANNNNTTC	1 cut(s)	645
AspLEI	GCGC	4 cut(s)	42, 174, 622, 861
AspS9I	GGNCC	2 cut(s)	75, 333
AsuC2I	CCSGG	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	75
BalI	TGGCCA	2 cut(s)	317, 635
BanII	GRGCYC	1 cut(s)	252
BarI	GAAGNNNNNNTAC	2 cut(s)	959, 991
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	1 cut(s)	13
BceAI	ACGGC	1 cut(s)	994
BcgI	CGANNNNNNTGC	2 cut(s)	730, 764
BciT130I	CCWGG	3 cut(s)	89, 155, 549
BciVI	GTATCC	1 cut(s)	968
BcnI	CCSGG	1 cut(s)	359
BcoDI	GTCTC	2 cut(s)	251, 666
BfoI	RGCGCY	2 cut(s)	175, 862
BfuAI	ACCTGC	2 cut(s)	58, 418
BfuI	GTATCC	1 cut(s)	968
BisI	GCNGC	2 cut(s)	102, 105
BlsI	GCNGC	2 cut(s)	103, 106
Bme1390I	CCNGG	4 cut(s)	89, 155, 359, 549
Bme18I	GGWCC	1 cut(s)	75
BmeRI	GACNNNNNGTC	1 cut(s)	997
BmgT120I	GGNCC	2 cut(s)	75, 333
BmiI	GGNNCC	2 cut(s)	76, 334
BmrFI	CCNGG	4 cut(s)	89, 155, 359, 549
BmsI	GCATC	3 cut(s)	206, 502, 1014
BpmI	CTGGAG	3 cut(s)	110, 921, 936
BpuEI	CTTGAG	1 cut(s)	896
BpuMI	CCSGG	1 cut(s)	359
Bsa29I	ATCGAT	1 cut(s)	1057
BsaJI	CCNNGG	1 cut(s)	87
BsaWI	WCCGGW	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	6 cut(s)	88, 93, 94, 133, 324, 811
Bse1I	ACTGG	2 cut(s)	474, 998
Bse3DI	GCAATG	3 cut(s)	478, 615, 822
BseBI	CCWGG	3 cut(s)	89, 155, 549
BseCI	ATCGAT	1 cut(s)	1057
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	2 cut(s)	150, 304
BseLI	CCNNNNNNNGG	6 cut(s)	88, 93, 94, 133, 324, 811
BseMI	GCAATG	3 cut(s)	478, 615, 822
BseMII	CTCAG	3 cut(s)	152, 189, 430
BseNI	ACTGG	2 cut(s)	474, 998
BseRI	GAGGAG	3 cut(s)	68, 71, 230
BseXI	GCAGC	1 cut(s)	88
BshFI	GGCC	4 cut(s)	107, 317, 335, 635
BshVI	ATCGAT	1 cut(s)	1057
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	212, 358
BslI	CCNNNNNNNGG	6 cut(s)	88, 93, 94, 133, 324, 811
BsmAI	GTCTC	2 cut(s)	251, 666
BsmBI	CGTCTC	1 cut(s)	251
BsnI	GGCC	4 cut(s)	107, 317, 335, 635
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp1407I	TGTACA	1 cut(s)	1085
Bsp143I	GATC	4 cut(s)	157, 225, 1054, 1058
BspACI	CCGC	4 cut(s)	35, 47, 104, 872
BspANI	GGCC	4 cut(s)	107, 317, 335, 635
BspCNI	CTCAG	3 cut(s)	151, 188, 429
BspDI	ATCGAT	1 cut(s)	1057
BspLI	GGNNCC	2 cut(s)	76, 334
BspMI	ACCTGC	2 cut(s)	58, 418
BspPI	GGATC	2 cut(s)	165, 1053
BsrDI	GCAATG	3 cut(s)	478, 615, 822
BsrGI	TGTACA	1 cut(s)	1085
BsrI	ACTGG	2 cut(s)	474, 998
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	4 cut(s)	157, 225, 1054, 1058
Bst2UI	CCWGG	3 cut(s)	89, 155, 549
Bst4CI	ACNGT	4 cut(s)	354, 601, 928, 1126
Bst6I	CTCTTC	1 cut(s)	576
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstAUI	TGTACA	1 cut(s)	1085
BstC8I	GCNNGC	3 cut(s)	462, 743, 872
BstDEI	CTNAG	3 cut(s)	138, 175, 416
BstENI	CCTNNNNNAGG	1 cut(s)	809
BstF5I	GGATG	2 cut(s)	150, 304
BstH2I	RGCGCY	2 cut(s)	175, 862
BstHHI	GCGC	4 cut(s)	42, 174, 622, 861
BstKTI	GATC	4 cut(s)	160, 228, 1057, 1061
BstMAI	GTCTC	2 cut(s)	251, 666
BstMBI	GATC	4 cut(s)	157, 225, 1054, 1058
BstMWI	GCNNNNNNNGC	4 cut(s)	178, 470, 867, 886
BstNI	CCWGG	3 cut(s)	89, 155, 549
BstNSI	RCATGY	3 cut(s)	209, 440, 1075
BstSCI	CCNGG	4 cut(s)	87, 153, 357, 547
BstV1I	GCAGC	1 cut(s)	88
Bsu15I	ATCGAT	1 cut(s)	1057
BsuI	GTATCC	1 cut(s)	968
BsuRI	GGCC	4 cut(s)	107, 317, 335, 635
BsuTUI	ATCGAT	1 cut(s)	1057
BtgZI	GCGATG	1 cut(s)	931
BtsCI	GGATG	2 cut(s)	150, 304
BtsIMutI	CAGTG	1 cut(s)	183
BveI	ACCTGC	2 cut(s)	58, 418
Cac8I	GCNNGC	3 cut(s)	462, 743, 872
CfoI	GCGC	4 cut(s)	42, 174, 622, 861
Cfr13I	GGNCC	2 cut(s)	75, 333
ClaI	ATCGAT	1 cut(s)	1057
CseI	GACGC	1 cut(s)	268
CsiI	ACCWGGT	1 cut(s)	547
Csp6I	GTAC	2 cut(s)	209, 1086
CviAII	CATG	9 cut(s)	43, 206, 388, 437, 535, 559, 715, 982, 1072
CviQI	GTAC	2 cut(s)	209, 1086
DdeI	CTNAG	3 cut(s)	138, 175, 416
DpnI	GATC	4 cut(s)	159, 227, 1056, 1060
DpnII	GATC	4 cut(s)	157, 225, 1054, 1058
DraIII	CACNNNGTG	1 cut(s)	1007
DriI	GACNNNNNGTC	1 cut(s)	997
EaeI	YGGCCR	3 cut(s)	105, 315, 633
Eam1104I	CTCTTC	1 cut(s)	576
Eam1105I	GACNNNNNGTC	1 cut(s)	997
EarI	CTCTTC	1 cut(s)	576
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	250
Eco57I	CTGAAG	2 cut(s)	257, 869
EcoICRI	GAGCTC	1 cut(s)	250
EcoNI	CCTNNNNNAGG	1 cut(s)	809
EcoO109I	RGGNCCY	1 cut(s)	333
EcoRII	CCWGG	3 cut(s)	87, 153, 547
EcoT38I	GRGCYC	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	251
FaeI	CATG	9 cut(s)	46, 209, 391, 440, 538, 562, 718, 985, 1075
FatI	CATG	9 cut(s)	42, 205, 387, 436, 534, 558, 714, 981, 1071
FauI	CCCGC	2 cut(s)	28, 879
Fnu4HI	GCNGC	2 cut(s)	102, 105
FokI	GGATG	2 cut(s)	137, 311
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	2 cut(s)	102, 105
FspI	TGCGCA	1 cut(s)	621
GlaI	GCGC	4 cut(s)	41, 173, 621, 860
GluI	GCNGC	2 cut(s)	102, 105
GsuI	CTGGAG	3 cut(s)	110, 921, 936
HaeII	RGCGCY	2 cut(s)	175, 862
HaeIII	GGCC	4 cut(s)	107, 317, 335, 635
HapII	CCGG	2 cut(s)	212, 358
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	4 cut(s)	42, 174, 622, 861
Hin1II	CATG	9 cut(s)	46, 209, 391, 440, 538, 562, 718, 985, 1075
Hin6I	GCGC	4 cut(s)	40, 172, 620, 859
HinP1I	GCGC	4 cut(s)	40, 172, 620, 859
HincII	GTYRAC	1 cut(s)	1129
HindII	GTYRAC	1 cut(s)	1129
HinfI	GANTC	3 cut(s)	584, 641, 830
HpaII	CCGG	2 cut(s)	212, 358
Hpy166II	GTNNAC	2 cut(s)	164, 1129
Hpy188I	TCNGA	5 cut(s)	141, 202, 409, 727, 1054
Hpy188III	TCNNGA	4 cut(s)	509, 749, 938, 953
Hpy8I	GTNNAC	2 cut(s)	164, 1129
HpyAV	CCTTC	5 cut(s)	19, 232, 320, 844, 964
HpyCH4III	ACNGT	4 cut(s)	354, 601, 928, 1126
HpyCH4V	TGCA	4 cut(s)	464, 483, 741, 1075
HpyF10VI	GCNNNNNNNGC	4 cut(s)	178, 470, 867, 886
HpyF3I	CTNAG	3 cut(s)	138, 175, 416
Hsp92II	CATG	9 cut(s)	46, 209, 391, 440, 538, 562, 718, 985, 1075
HspAI	GCGC	4 cut(s)	40, 172, 620, 859
Kzo9I	GATC	4 cut(s)	157, 225, 1054, 1058
LmnI	GCTCC	2 cut(s)	247, 955
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	3 cut(s)	206, 502, 1014
MabI	ACCWGGT	1 cut(s)	547
MaeIII	GTNAC	4 cut(s)	710, 989, 999, 1064
MalI	GATC	4 cut(s)	159, 227, 1056, 1060
MboI	GATC	4 cut(s)	157, 225, 1054, 1058
MboII	GAAGA	5 cut(s)	376, 412, 593, 759, 979
MhlI	GDGCHC	1 cut(s)	252
MlsI	TGGCCA	2 cut(s)	317, 635
MluCI	AATT	7 cut(s)	229, 288, 321, 454, 760, 911, 1107
MluNI	TGGCCA	2 cut(s)	317, 635
MlyI	GAGTC	1 cut(s)	593
MmeI	TCCRAC	1 cut(s)	910
Mox20I	TGGCCA	2 cut(s)	317, 635
MroXI	GAANNNNTTC	1 cut(s)	645
MscI	TGGCCA	2 cut(s)	317, 635
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	47
Msp20I	TGGCCA	2 cut(s)	317, 635
MspI	CCGG	2 cut(s)	212, 358
MspR9I	CCNGG	4 cut(s)	89, 155, 359, 549
MvaI	CCWGG	3 cut(s)	89, 155, 549
MwoI	GCNNNNNNNGC	4 cut(s)	178, 470, 867, 886
NciI	CCSGG	1 cut(s)	359
NdeII	GATC	4 cut(s)	157, 225, 1054, 1058
NlaIII	CATG	9 cut(s)	46, 209, 391, 440, 538, 562, 718, 985, 1075
NlaIV	GGNNCC	2 cut(s)	76, 334
NmuCI	GTSAC	3 cut(s)	710, 989, 999
NsbI	TGCGCA	1 cut(s)	621
NspI	RCATGY	3 cut(s)	209, 440, 1075
PaqCI	CACCTGC	1 cut(s)	58
PciI	ACATGT	2 cut(s)	205, 436
PdmI	GAANNNNTTC	1 cut(s)	645
PfeI	GAWTC	2 cut(s)	641, 830
PfoI	TCCNGGA	1 cut(s)	153
PkrI	GCNGC	2 cut(s)	103, 106
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
PscI	ACATGT	2 cut(s)	205, 436
Psp124BI	GAGCTC	1 cut(s)	252
Psp6I	CCWGG	3 cut(s)	87, 153, 547
PspGI	CCWGG	3 cut(s)	87, 153, 547
PspN4I	GGNNCC	2 cut(s)	76, 334
PspPI	GGNCC	2 cut(s)	75, 333
RsaI	GTAC	2 cut(s)	210, 1087
RsaNI	GTAC	2 cut(s)	209, 1086
RseI	CAYNNNNRTG	1 cut(s)	47
SacI	GAGCTC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	2 cut(s)	102, 105
Sau3AI	GATC	4 cut(s)	157, 225, 1054, 1058
Sau96I	GGNCC	2 cut(s)	75, 333
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	4 cut(s)	89, 155, 359, 549
SduI	GDGCHC	1 cut(s)	252
SexAI	ACCWGGT	1 cut(s)	547
SfaNI	GCATC	3 cut(s)	206, 502, 1014
SinI	GGWCC	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	875
SmoI	CTYRAG	1 cut(s)	875
Sse9I	AATT	7 cut(s)	229, 288, 321, 454, 760, 911, 1107
SsiI	CCGC	4 cut(s)	35, 47, 104, 872
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	4 cut(s)	87, 153, 357, 547
TaaI	ACNGT	4 cut(s)	354, 601, 928, 1126
TaqI	TCGA	5 cut(s)	750, 758, 923, 1057, 1117
TasI	AATT	7 cut(s)	229, 288, 321, 454, 760, 911, 1107
TatI	WGTACW	1 cut(s)	1085
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	2 cut(s)	641, 830
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	3 cut(s)	710, 989, 999
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	3 cut(s)	710, 989, 999
TspDTI	ATGAA	8 cut(s)	106, 158, 404, 638, 731, 792, 798, 843
TspRI	CASTG	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	75
XagI	CCTNNNNNAGG	1 cut(s)	809
XapI	RAATTY	4 cut(s)	288, 454, 760, 1107
XceI	RCATGY	3 cut(s)	209, 440, 1075
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.