Rh2BG088100

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0011798
Physical Location & Seq
Forward (+)
6868265 .. 6875342
7078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG088100.1

Sequence Viewer

Length: 1311 bp
ATGCGACTTAAAAGGCACAAGATTTGTGTTGAGGATTTCGACCTTCTCACCATAATTGGCAGAGGAGCCTTTGGAGAGGTTAGATTGTGTCGCGAGAAGATATCAGGCACCATTTTTGCCATGAAAAAGTTGAAGAAGTCAGAAATGCTCAGCAGGGGACAGGTTGAACATGTTAGAGCTGAAAGGAATTTGCTTGCAGAAGTTGCCAGTCACTGCATTGTGAAACTTTACTATTCATTTCAAGACGCTGAATACTTGTATCTAATTATGGAGTATCTACCTGGTGGAGACATGATGACTTTGCTTATAAGAGAAGAGACTTTGACTGAAACTGTTGCTAGATTTTATATTGCTCAAAGTGTTCTGGCAATAGAATCTATTCATAAACATAACTATATTCACAGAGATATAAAACCAGACAATCTTTTATTAGACCAAAATGGTCACATGAAGCTCTCTGATTTTGGTCTTTGCAAGCCTCTTGATTGCTCAAATTTATCTTCCATAAATGAAAATGAAGTGCTCGATGATGATAACTTGCATGAGACAATGGATATTGATGAATCCTCCCCAGAGACCAAAAATGGGAGGCCCTGGAAAAGCCCGCTTGAGCAGCTTCAGCATTGGCAGATAAACAGGAGAACACTGGCATATTCAACAGTTGGCACACCGGATTACATTGCTCCAGAAGTATTATTGAAGAAAGGATATGGCATGGAGTGTGATTGGTGGTCACTGGGTGCGATAATGTATGAGATGCTTGTTGGTTATCCCCCATTTTACTCTGATGATCCAGTAACAACATGCAGAAAGATAGTGCATTGGAAAAATCACTTGAAATTTCCCGTGGAGGCAAGGTTGACGCCTGAAGCAAAGGATCTGATTAGTAGGTTTCTCTGTGATGTTGAACATAGGCTTCGTACAGCAGACCAAATCAAGGCGCATCCTTGGTTCAGAGATGTCCAGTGGGACAGACTTTATGAAATGGAGGCAGCATTTAAACCAGAGGTCAATGGGGAACTCGATACTCAAAATTTTATGAAATATGATGAGGTAGATGCACCAGCGCCCGGAAGAATTGGATCTGGACTAATGAGAAAGATGTTGTTGACTCCTAAAGATCTCAGTTTTGTTGGCTATACATACAAAAATTTTGAGGCTGTCAAAGGTTTAAAGAGGAGTGCATCACTAAATCGGTCCTCCATTGACTCTGCAAACAGTGATTCTGTACTGGACTACTCCAAAAGGTATTCGGTAGATGACATGGAAGCTCAGGTGCTTGCTGATTCAGGGGACGTCATGTCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_C

Protein Analysis

436

Amino Acids

50.21

Weight (kDa)

5.63

Isoelectric Point (pI)

31.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 15 - 164 2.1e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 16 - 162 9.4e-23 Protein tyrosine and serine/threonine kinase
ABC1 PF03109 87 - 162 1.9e-06 ABC1 atypical kinase-like domain
Pkinase PF00069 212 - 318 5.4e-22 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 308
AatII GACGTC 1 cut(s) 1299
AccB1I GGYRCC 1 cut(s) 107
AccII CGCG 1 cut(s) 93
AciI CCGC 1 cut(s) 605
AclWI GGATC 3 cut(s) 785, 885, 1090
AcsI RAATTY 5 cut(s) 187, 493, 839, 1033, 1150
AcuI CTGAAG 2 cut(s) 602, 888
AcyI GRCGYC 2 cut(s) 863, 1296
AdeI CACNNNGTG 1 cut(s) 740
AfaI GTAC 2 cut(s) 922, 1230
AfiI CCNNNNNNNGG 3 cut(s) 585, 937, 1070
AflIII ACRYGT 1 cut(s) 169
AgsI TTSAA 7 cut(s) 133, 167, 242, 657, 700, 838, 908
AhdI GACNNNNNGTC 1 cut(s) 1300
AjnI CCWGG 2 cut(s) 280, 593
AluBI AGCT 4 cut(s) 179, 454, 616, 1271
AluI AGCT 4 cut(s) 179, 454, 616, 1271
Alw21I GWGCWC 1 cut(s) 525
Alw26I GTCTC 4 cut(s) 282, 311, 539, 569
AlwI GGATC 3 cut(s) 785, 885, 1090
AlwNI CAGNNNCTG 1 cut(s) 213
AoxI GGCC 1 cut(s) 590
ApeKI GCWGC 2 cut(s) 613, 992
ApoI RAATTY 5 cut(s) 187, 493, 839, 1033, 1150
Asp700I GAANNNNTTC 1 cut(s) 378
AspLEI GCGC 2 cut(s) 943, 1069
AspS9I GGNCC 2 cut(s) 591, 1197
AsuC2I CCSGG 1 cut(s) 1071
AsuHPI GGTGA 1 cut(s) 40
AvaII GGWCC 1 cut(s) 1197
BanI GGYRCC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 525
BbvI GCAGC 2 cut(s) 625, 1004
BciT130I CCWGG 2 cut(s) 282, 595
BcnI CCSGG 1 cut(s) 1071
BcoDI GTCTC 4 cut(s) 282, 311, 539, 569
BfaI CTAG 1 cut(s) 339
BfoI RGCGCY 1 cut(s) 1070
BglII AGATCT 1 cut(s) 1120
BisI GCNGC 2 cut(s) 614, 993
BlpI GCTNAGC 1 cut(s) 149
BlsI GCNGC 2 cut(s) 615, 994
Bme1390I CCNGG 3 cut(s) 282, 595, 1071
Bme18I GGWCC 1 cut(s) 1197
BmeRI GACNNNNNGTC 1 cut(s) 1300
BmgT120I GGNCC 2 cut(s) 591, 1197
BmiI GGNNCC 2 cut(s) 67, 109
BmrFI CCNGG 3 cut(s) 282, 595, 1071
BmrI ACTGGG 1 cut(s) 746
BmsI GCATC 4 cut(s) 747, 952, 1048, 1193
BmuI ACTGGG 1 cut(s) 746
BpmI CTGGAG 1 cut(s) 669
Bpu10I CCTNAGC 1 cut(s) 1272
Bpu1102I GCTNAGC 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 629
BpuMI CCSGG 1 cut(s) 1071
BsaHI GRCGYC 2 cut(s) 863, 1296
BsaI GGTCTC 1 cut(s) 569
BsaJI CCNNGG 3 cut(s) 593, 846, 947
BsaWI WCCGGW 1 cut(s) 670
BsaXI ACNNNNNCTCC 2 cut(s) 842, 872
Bsc4I CCNNNNNNNGG 3 cut(s) 585, 937, 1070
Bse1I ACTGG 6 cut(s) 207, 651, 741, 794, 964, 1236
Bse3DI GCAATG 1 cut(s) 678
BseBI CCWGG 2 cut(s) 282, 595
BseDI CCNNGG 3 cut(s) 593, 846, 947
BseGI GGATG 1 cut(s) 943
BseLI CCNNNNNNNGG 3 cut(s) 585, 937, 1070
BseMI GCAATG 1 cut(s) 678
BseMII CTCAG 3 cut(s) 163, 1138, 1286
BseNI ACTGG 6 cut(s) 207, 651, 741, 794, 964, 1236
BseRI GAGGAG 2 cut(s) 78, 1192
BseXI GCAGC 2 cut(s) 625, 1004
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 592
BshNI GGYRCC 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 525
BsiSI CCGG 2 cut(s) 671, 1071
BslFI GGGAC 3 cut(s) 171, 983, 1307
BslI CCNNNNNNNGG 3 cut(s) 585, 937, 1070
BsmAI GTCTC 4 cut(s) 282, 311, 539, 569
BsmFI GGGAC 3 cut(s) 171, 983, 1307
BsnI GGCC 1 cut(s) 592
Bso31I GGTCTC 1 cut(s) 569
Bsp1286I GDGCHC 1 cut(s) 525
Bsp143I GATC 4 cut(s) 790, 877, 1082, 1120
Bsp1720I GCTNAGC 1 cut(s) 149
Bsp68I TCGCGA 1 cut(s) 93
BspACI CCGC 1 cut(s) 605
BspANI GGCC 1 cut(s) 592
BspCNI CTCAG 3 cut(s) 162, 1137, 1285
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 67, 109
BspPI GGATC 3 cut(s) 785, 885, 1090
BspT107I GGYRCC 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 569
BsrDI GCAATG 1 cut(s) 678
BsrI ACTGG 6 cut(s) 207, 651, 741, 794, 964, 1236
BssECI CCNNGG 3 cut(s) 593, 846, 947
BssMI GATC 4 cut(s) 790, 877, 1082, 1120
BssNI GRCGYC 2 cut(s) 863, 1296
BssT1I CCWWGG 1 cut(s) 947
Bst2UI CCWGG 2 cut(s) 282, 595
Bst4CI ACNGT 3 cut(s) 334, 661, 1220
Bst6I CTCTTC 1 cut(s) 309
BstACI GRCGYC 2 cut(s) 863, 1296
BstAPI GCANNNNNTGC 1 cut(s) 203
BstC8I GCNNGC 4 cut(s) 195, 476, 605, 1281
BstDEI CTNAG 3 cut(s) 149, 1124, 1272
BstDSI CCRYGG 1 cut(s) 846
BstF5I GGATG 1 cut(s) 943
BstFNI CGCG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 1070
BstHHI GCGC 2 cut(s) 943, 1069
BstKTI GATC 4 cut(s) 793, 880, 1085, 1123
BstMAI GTCTC 4 cut(s) 282, 311, 539, 569
BstMBI GATC 4 cut(s) 790, 877, 1082, 1120
BstMWI GCNNNNNNNGC 3 cut(s) 203, 613, 619
BstNI CCWGG 2 cut(s) 282, 595
BstNSI RCATGY 2 cut(s) 173, 807
BstSCI CCNGG 3 cut(s) 280, 593, 1069
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 625, 1004
BstX2I RGATCY 3 cut(s) 877, 1082, 1120
BstYI RGATCY 3 cut(s) 877, 1082, 1120
BsuRI GGCC 1 cut(s) 592
BtgI CCRYGG 1 cut(s) 846
BtsCI GGATG 1 cut(s) 943
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 5 cut(s) 211, 644, 734, 971, 1225
BtuMI TCGCGA 1 cut(s) 93
Cac8I GCNNGC 4 cut(s) 195, 476, 605, 1281
CaiI CAGNNNCTG 1 cut(s) 213
CfoI GCGC 2 cut(s) 943, 1069
Cfr13I GGNCC 2 cut(s) 591, 1197
CseI GACGC 2 cut(s) 254, 871
CsiI ACCWGGT 1 cut(s) 280
Csp6I GTAC 2 cut(s) 921, 1229
CviAII CATG 9 cut(s) 121, 170, 292, 448, 542, 715, 804, 1264, 1300
CviQI GTAC 2 cut(s) 921, 1229
DdeI CTNAG 3 cut(s) 149, 1124, 1272
DpnI GATC 4 cut(s) 792, 879, 1084, 1122
DpnII GATC 4 cut(s) 790, 877, 1082, 1120
DraI TTTAAA 2 cut(s) 1000, 1173
DraIII CACNNNGTG 1 cut(s) 740
DriI GACNNNNNGTC 1 cut(s) 1300
Eam1104I CTCTTC 1 cut(s) 309
Eam1105I GACNNNNNGTC 1 cut(s) 1300
EarI CTCTTC 1 cut(s) 309
Eco130I CCWWGG 1 cut(s) 947
Eco31I GGTCTC 1 cut(s) 569
Eco32I GATATC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 1197
Eco57I CTGAAG 2 cut(s) 602, 888
EcoO109I RGGNCCY 1 cut(s) 591
EcoRII CCWGG 2 cut(s) 280, 593
EcoRV GATATC 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 947
ErhI CCWWGG 1 cut(s) 947
FaeI CATG 9 cut(s) 124, 173, 295, 451, 545, 718, 807, 1267, 1303
FaqI GGGAC 3 cut(s) 171, 983, 1307
FatI CATG 9 cut(s) 120, 169, 291, 447, 541, 714, 803, 1263, 1299
FauI CCCGC 1 cut(s) 612
Fnu4HI GCNGC 2 cut(s) 614, 993
FokI GGATG 1 cut(s) 930
Fsp4HI GCNGC 2 cut(s) 614, 993
FspBI CTAG 1 cut(s) 339
GlaI GCGC 2 cut(s) 942, 1068
GluI GCNGC 2 cut(s) 614, 993
GsuI CTGGAG 1 cut(s) 669
HaeII RGCGCY 1 cut(s) 1070
HaeIII GGCC 1 cut(s) 592
HapII CCGG 2 cut(s) 671, 1071
HgaI GACGC 2 cut(s) 254, 871
HhaI GCGC 2 cut(s) 943, 1069
Hin1I GRCGYC 2 cut(s) 863, 1296
Hin1II CATG 9 cut(s) 124, 173, 295, 451, 545, 718, 807, 1267, 1303
Hin6I GCGC 2 cut(s) 941, 1067
HinP1I GCGC 2 cut(s) 941, 1067
HincII GTYRAC 2 cut(s) 861, 1110
HindII GTYRAC 2 cut(s) 861, 1110
HinfI GANTC 6 cut(s) 374, 563, 1111, 1208, 1223, 1286
HpaII CCGG 2 cut(s) 671, 1071
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 2 cut(s) 861, 1110
Hpy188I TCNGA 6 cut(s) 142, 460, 787, 882, 956, 1306
Hpy188III TCNNGA 5 cut(s) 92, 242, 482, 686, 1086
Hpy8I GTNNAC 2 cut(s) 861, 1110
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 3 cut(s) 334, 661, 1220
HpyCH4IV ACGT 1 cut(s) 1296
HpyCH4V TGCA 9 cut(s) 197, 216, 474, 541, 807, 820, 1061, 1184, 1214
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 613, 619
HpyF3I CTNAG 3 cut(s) 149, 1124, 1272
HpySE526I ACGT 1 cut(s) 1296
Hsp92I GRCGYC 2 cut(s) 863, 1296
Hsp92II CATG 9 cut(s) 124, 173, 295, 451, 545, 718, 807, 1267, 1303
HspAI GCGC 2 cut(s) 941, 1067
Kzo9I GATC 4 cut(s) 790, 877, 1082, 1120
LmnI GCTCC 2 cut(s) 65, 688
Lsp1109I GCAGC 2 cut(s) 625, 1004
LweI GCATC 4 cut(s) 747, 952, 1048, 1193
MabI ACCWGGT 1 cut(s) 280
MaeI CTAG 1 cut(s) 339
MaeII ACGT 1 cut(s) 1296
MaeIII GTNAC 4 cut(s) 209, 443, 732, 796
MalI GATC 4 cut(s) 792, 879, 1084, 1122
MboI GATC 4 cut(s) 790, 877, 1082, 1120
MboII GAAGA 6 cut(s) 109, 145, 326, 492, 712, 1086
MflI RGATCY 3 cut(s) 877, 1082, 1120
MhlI GDGCHC 1 cut(s) 525
MluCI AATT 8 cut(s) 54, 187, 264, 493, 839, 1033, 1077, 1150
MlyI GAGTC 2 cut(s) 1105, 1202
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 3 cut(s) 9, 999, 1172
MspI CCGG 2 cut(s) 671, 1071
MspR9I CCNGG 3 cut(s) 282, 595, 1071
MvaI CCWGG 2 cut(s) 282, 595
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 3 cut(s) 203, 613, 619
NciI CCSGG 1 cut(s) 1071
NdeII GATC 4 cut(s) 790, 877, 1082, 1120
NlaIII CATG 9 cut(s) 124, 173, 295, 451, 545, 718, 807, 1267, 1303
NlaIV GGNNCC 2 cut(s) 67, 109
NmuCI GTSAC 3 cut(s) 209, 443, 732
NruI TCGCGA 1 cut(s) 93
NspI RCATGY 2 cut(s) 173, 807
PciI ACATGT 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 4 cut(s) 374, 563, 1223, 1286
PkrI GCNGC 2 cut(s) 615, 994
PleI GAGTC 2 cut(s) 1105, 1202
PpsI GAGTC 2 cut(s) 1105, 1202
PscI ACATGT 1 cut(s) 169
PsiI TTATAA 1 cut(s) 308
Psp6I CCWGG 2 cut(s) 280, 593
PspGI CCWGG 2 cut(s) 280, 593
PspN4I GGNNCC 2 cut(s) 67, 109
PspPI GGNCC 2 cut(s) 591, 1197
PstNI CAGNNNCTG 1 cut(s) 213
PsuI RGATCY 3 cut(s) 877, 1082, 1120
RruI TCGCGA 1 cut(s) 93
RsaI GTAC 2 cut(s) 922, 1230
RsaNI GTAC 2 cut(s) 921, 1229
SaqAI TTAA 3 cut(s) 9, 999, 1172
SatI GCNGC 2 cut(s) 614, 993
Sau3AI GATC 4 cut(s) 790, 877, 1082, 1120
Sau96I GGNCC 2 cut(s) 591, 1197
SchI GAGTC 2 cut(s) 1105, 1202
ScrFI CCNGG 3 cut(s) 282, 595, 1071
SduI GDGCHC 1 cut(s) 525
SexAI ACCWGGT 1 cut(s) 280
SfaNI GCATC 4 cut(s) 747, 952, 1048, 1193
SinI GGWCC 1 cut(s) 1197
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
Sse9I AATT 8 cut(s) 54, 187, 264, 493, 839, 1033, 1077, 1150
SsiI CCGC 1 cut(s) 605
SspMI CTAG 1 cut(s) 339
StyD4I CCNGG 3 cut(s) 280, 593, 1069
StyI CCWWGG 1 cut(s) 947
TaaI ACNGT 3 cut(s) 334, 661, 1220
TaiI ACGT 1 cut(s) 1299
TaqI TCGA 3 cut(s) 39, 525, 1023
TaqII GACCGA 1 cut(s) 1185
TasI AATT 8 cut(s) 54, 187, 264, 493, 839, 1033, 1077, 1150
TatI WGTACW 1 cut(s) 1228
TfiI GAWTC 4 cut(s) 374, 563, 1223, 1286
Tru1I TTAA 3 cut(s) 9, 999, 1172
Tru9I TTAA 3 cut(s) 9, 999, 1172
TscAI CASTG 5 cut(s) 218, 651, 741, 971, 1225
TseFI GTSAC 3 cut(s) 209, 443, 732
TseI GCWGC 2 cut(s) 613, 992
Tsp45I GTSAC 3 cut(s) 209, 443, 732
TspDTI ATGAA 9 cut(s) 137, 225, 371, 464, 525, 531, 576, 996, 1055
TspRI CASTG 5 cut(s) 218, 651, 741, 971, 1225
VpaK11BI GGWCC 1 cut(s) 1197
XapI RAATTY 5 cut(s) 187, 493, 839, 1033, 1150
XceI RCATGY 2 cut(s) 173, 807
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 1 cut(s) 339
ZraI GACGTC 1 cut(s) 1297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.