Rorug02G0040500

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011798
Physical Location & Seq
Reverse (-)
3159872 .. 3160664
793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0040500.1

Sequence Viewer

Length: 351 bp
ATGTCCACCAATCTCATCCACTTCCGGCCAGCCCTCACCGCCCCTTGCGCCGCCGCGAACCGGAAGCCCGAGCAGGCCCGCACCTCCAAGTGGTGGAGCCCTCTCTTCGGCTGGTCCGCCGAACCGGACTACATTGACTCCAACAACTCCAAATCCTCCTCCGAGCCGGCCGAGGACGGACCGGAGTCCAACCAGCGGCGATCTCGGTTCGCGCCGGGCTGCTTCACGGAGGAGAAGGCCAAGCAGCTCCGGCTCAAGACCATCGAAACGGAGACGTTTCACGACGCCATGTACCACTCATCGATCGCCACCAGACTCGCCTCCGATTTCAAGAACCGGTCCGATCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_C

Protein Analysis

116

Amino Acids

13.12

Weight (kDa)

7.81

Isoelectric Point (pI)

72.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 93
AccII CGCG 2 cut(s) 56, 212
AciI CCGC 6 cut(s) 39, 51, 54, 79, 117, 196
AcoI YGGCCR 2 cut(s) 26, 168
AcyI GRCGYC 1 cut(s) 285
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 5 cut(s) 60, 90, 93, 107, 195
AgeI ACCGGT 1 cut(s) 336
AgsI TTSAA 1 cut(s) 331
AluBI AGCT 1 cut(s) 247
AluI AGCT 1 cut(s) 247
Alw26I GTCTC 1 cut(s) 266
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 4 cut(s) 26, 75, 168, 237
ApeKI GCWGC 2 cut(s) 219, 244
AsiGI ACCGGT 1 cut(s) 336
AspLEI GCGC 2 cut(s) 50, 214
AspS9I GGNCC 4 cut(s) 76, 114, 179, 339
AsuC2I CCSGG 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 68
AvaII GGWCC 3 cut(s) 114, 179, 339
BanII GRGCYC 1 cut(s) 101
BbvI GCAGC 2 cut(s) 206, 256
BccI CCATC 1 cut(s) 269
BcnI CCSGG 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 266
BisI GCNGC 5 cut(s) 51, 54, 197, 220, 245
BlsI GCNGC 5 cut(s) 52, 55, 198, 221, 246
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 3 cut(s) 114, 179, 339
BmeT110I CYCGRG 1 cut(s) 68
BmgT120I GGNCC 4 cut(s) 76, 114, 179, 339
BmiI GGNNCC 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 216
BoxI GACNNNNGTC 1 cut(s) 184
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 216
Bsa29I ATCGAT 1 cut(s) 302
BsaHI GRCGYC 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 171
BsaWI WCCGGW 4 cut(s) 60, 124, 181, 336
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 5 cut(s) 60, 90, 93, 107, 195
Bse118I RCCGGY 2 cut(s) 166, 336
BseCI ATCGAT 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 1 cut(s) 15
BseLI CCNNNNNNNGG 5 cut(s) 60, 90, 93, 107, 195
BseRI GAGGAG 2 cut(s) 148, 245
BseX3I CGGCCG 1 cut(s) 168
BseXI GCAGC 2 cut(s) 206, 256
Bsh1236I CGCG 2 cut(s) 56, 212
Bsh1285I CGRYCG 2 cut(s) 171, 306
BshFI GGCC 4 cut(s) 28, 77, 170, 239
BshTI ACCGGT 1 cut(s) 336
BshVI ATCGAT 1 cut(s) 302
BsiEI CGRYCG 2 cut(s) 171, 306
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 8 cut(s) 25, 61, 125, 167, 182, 215, 250, 337
BslI CCNNNNNNNGG 5 cut(s) 60, 90, 93, 107, 195
BsmAI GTCTC 1 cut(s) 266
BsmBI CGTCTC 1 cut(s) 266
BsnI GGCC 4 cut(s) 28, 77, 170, 239
BsoBI CYCGRG 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 101
Bsp143I GATC 3 cut(s) 200, 303, 343
BspACI CCGC 6 cut(s) 39, 51, 54, 79, 117, 196
BspANI GGCC 4 cut(s) 28, 77, 170, 239
BspDI ATCGAT 1 cut(s) 302
BspFNI CGCG 2 cut(s) 56, 212
BspLI GGNNCC 1 cut(s) 98
BsrFI RCCGGY 2 cut(s) 166, 336
BssAI RCCGGY 2 cut(s) 166, 336
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 3 cut(s) 200, 303, 343
BssNI GRCGYC 1 cut(s) 285
Bst6I CTCTTC 1 cut(s) 110
BstACI GRCGYC 1 cut(s) 285
BstC8I GCNNGC 4 cut(s) 30, 75, 79, 168
BstF5I GGATG 1 cut(s) 15
BstFNI CGCG 2 cut(s) 56, 212
BstHHI GCGC 2 cut(s) 50, 214
BstKTI GATC 3 cut(s) 203, 306, 346
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 3 cut(s) 200, 303, 343
BstMCI CGRYCG 2 cut(s) 171, 306
BstMWI GCNNNNNNNGC 3 cut(s) 38, 47, 250
BstPAI GACNNNNGTC 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 214
BstUI CGCG 2 cut(s) 56, 212
BstV1I GCAGC 2 cut(s) 206, 256
BstZI CGGCCG 1 cut(s) 168
Bsu15I ATCGAT 1 cut(s) 302
BsuRI GGCC 4 cut(s) 28, 77, 170, 239
BsuTUI ATCGAT 1 cut(s) 302
BtsCI GGATG 1 cut(s) 15
Cac8I GCNNGC 4 cut(s) 30, 75, 79, 168
CfoI GCGC 2 cut(s) 50, 214
Cfr10I RCCGGY 2 cut(s) 166, 336
Cfr13I GGNCC 4 cut(s) 76, 114, 179, 339
ClaI ATCGAT 1 cut(s) 302
CpoI CGGWCCG 2 cut(s) 179, 339
CseI GACGC 1 cut(s) 293
Csp6I GTAC 1 cut(s) 292
CspAI ACCGGT 1 cut(s) 336
CspI CGGWCCG 2 cut(s) 179, 339
CviAII CATG 1 cut(s) 289
CviQI GTAC 1 cut(s) 292
DpnI GATC 3 cut(s) 202, 305, 345
DpnII GATC 3 cut(s) 200, 303, 343
EaeI YGGCCR 2 cut(s) 26, 168
EagI CGGCCG 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
EciI GGCGGA 1 cut(s) 106
EclXI CGGCCG 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 101
Eco47I GGWCC 3 cut(s) 114, 179, 339
Eco52I CGGCCG 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 101
Esp3I CGTCTC 1 cut(s) 266
FaeI CATG 1 cut(s) 292
FaiI YATR 1 cut(s) 290
FatI CATG 1 cut(s) 288
FauI CCCGC 1 cut(s) 86
Fnu4HI GCNGC 5 cut(s) 51, 54, 197, 220, 245
FokI GGATG 1 cut(s) 2
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 5 cut(s) 51, 54, 197, 220, 245
GlaI GCGC 2 cut(s) 49, 213
GluI GCNGC 5 cut(s) 51, 54, 197, 220, 245
HaeIII GGCC 4 cut(s) 28, 77, 170, 239
HapII CCGG 8 cut(s) 25, 61, 125, 167, 182, 215, 250, 337
HgaI GACGC 1 cut(s) 293
HhaI GCGC 2 cut(s) 50, 214
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 1 cut(s) 292
Hin6I GCGC 2 cut(s) 48, 212
HinP1I GCGC 2 cut(s) 48, 212
HinfI GANTC 3 cut(s) 137, 185, 315
HpaII CCGG 8 cut(s) 25, 61, 125, 167, 182, 215, 250, 337
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 4 cut(s) 163, 325, 343, 350
Hpy188III TCNNGA 3 cut(s) 256, 281, 331
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 47, 250
HpySE526I ACGT 1 cut(s) 275
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 1 cut(s) 292
HspAI GCGC 2 cut(s) 48, 212
KroI GCCGGC 1 cut(s) 166
KroNI GCCGGC 1 cut(s) 168
Kzo9I GATC 3 cut(s) 200, 303, 343
LmnI GCTCC 2 cut(s) 96, 252
Lsp1109I GCAGC 2 cut(s) 206, 256
MaeII ACGT 1 cut(s) 275
MalI GATC 3 cut(s) 202, 305, 345
MboI GATC 3 cut(s) 200, 303, 343
MboII GAAGA 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 101
MlyI GAGTC 3 cut(s) 131, 194, 309
MmeI TCCRAC 2 cut(s) 165, 213
MnlI CCTC 8 cut(s) 44, 94, 111, 166, 166, 169, 223, 331
MroNI GCCGGC 1 cut(s) 166
MspA1I CMGCKG 1 cut(s) 196
MspI CCGG 8 cut(s) 25, 61, 125, 167, 182, 215, 250, 337
MspR9I CCNGG 1 cut(s) 216
MvnI CGCG 2 cut(s) 56, 212
MwoI GCNNNNNNNGC 3 cut(s) 38, 47, 250
NaeI GCCGGC 1 cut(s) 168
NciI CCSGG 1 cut(s) 216
NdeII GATC 3 cut(s) 200, 303, 343
NgoMIV GCCGGC 1 cut(s) 166
NlaIII CATG 1 cut(s) 292
NlaIV GGNNCC 1 cut(s) 98
NmeAIII GCCGAG 1 cut(s) 196
PdiI GCCGGC 1 cut(s) 168
PflMI CCANNNNNTGG 1 cut(s) 93
PinAI ACCGGT 1 cut(s) 336
PkrI GCNGC 5 cut(s) 52, 55, 198, 221, 246
Ple19I CGATCG 1 cut(s) 306
PleI GAGTC 3 cut(s) 131, 193, 309
PpsI GAGTC 3 cut(s) 131, 193, 309
PshAI GACNNNNGTC 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 98
PspPI GGNCC 4 cut(s) 76, 114, 179, 339
PvuI CGATCG 1 cut(s) 306
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
Rsr2I CGGWCCG 2 cut(s) 179, 339
RsrII CGGWCCG 2 cut(s) 179, 339
SatI GCNGC 5 cut(s) 51, 54, 197, 220, 245
Sau3AI GATC 3 cut(s) 200, 303, 343
Sau96I GGNCC 4 cut(s) 76, 114, 179, 339
SchI GAGTC 3 cut(s) 131, 194, 309
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 1 cut(s) 101
SetI ASST 3 cut(s) 86, 249, 278
SinI GGWCC 3 cut(s) 114, 179, 339
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
SsiI CCGC 6 cut(s) 39, 51, 54, 79, 117, 196
StyD4I CCNGG 1 cut(s) 214
TaiI ACGT 1 cut(s) 278
TaqI TCGA 2 cut(s) 264, 302
TauI GCSGC 3 cut(s) 53, 56, 199
TseI GCWGC 2 cut(s) 219, 244
TspGWI ACGGA 3 cut(s) 192, 242, 284
Van91I CCANNNNNTGG 1 cut(s) 93
VpaK11BI GGWCC 3 cut(s) 114, 179, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.