FvH4_1g08960

Inter-alpha-trypsin inhibitor heavy

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
4750012 .. 4755109
5098 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g08960.t1

Sequence Viewer

Length: 1716 bp
ATGCCGCCGATTGATGGGGGAGTCAATCTCACAGTGAAAATGAGTTGGTCTCAGAAGTTACTCTATCGAAATGGAGAGCTTTCTTTGGATGTACCGTTCACATTTCCTGAGTTTGTCGTCCCACCCGGAAAGAAGTACCTGAAAAAGGAGAAGATCCAATTGAATGTGAACTCTGGTCTGGGAACTGGAATTCTATTCAAGGGAGCTAGCCATCTTTTGAAGGAAATGCAGAGCCAAGATGGTAAACTGGGTTTTAAGTACGAGGGAGATGTTGTCGATTGGTCAAAAACTGACTTCCATTTCTCATATGCTGTCTCTTCAAGCCAAATACGTGGTGCTGTTATCTTGCAGTCACCGTCCAAGGATGATGTTGATCAAAGAGAGATTTTCTCTGTCTATCTTCTTCCAGGAAACCAGCGAAGTAGAAAGGGTTTCAGAAGGAATATAGTGATTGTTGTTGATATAAGTGGAAGTATGCAGGGAAAGCCACTTGAGGATACTAAGAATGCACTATTGGAAGCCCTCCTTAAACTTGATCCAGAGGATTCATTCTGCATTATAGCTTTTAATGGACAGACTTATACTTCATCTACATCATTAAAATCGGCTACCAAGGAGGCTATCGACTCAGCCATTGAGTGGATAGGCATAAATTTTATTGCTGGCGGTGACACAAATATTTTGCGTCCCCTTAACATGGCAATAGATATGCTATCCAACTCTAATGGTTCACTTCCTCTCATATTCCTGGTTACTGATGGGGCAGTCGAAGATGAGAGACAAATCTGCGATGTAATAAAAAAGCGTCTTGCAAGTGACAATGCTATATCCCCTCGCATATACACTTTTGGAATAGGTTCGTTCTGCAACCATTATTTCCTGCGGATGCTAGCAACGATTGGAAGGGGCCAACATGATGCTGCCTATGATATAGAGTTCGTTCAGCGTCGAATACAGAAACTATTTGCGAGAGCTTCATCTGTGATTCTTACAAATATAACCATTGAGACATTGGACGATCTTGATGATGTAGAGGTGTTTCCTTGCCATATTCCAGACCTATCATTTGAGAGTCCATTGAGTGTATCTGGGAGATTCCGAGGCAAATTACCGGAGAGCTTCAAAGTTAATGGATTCTCAGCTGATATGTCGACTATTGTGATCGACATGAAATTCCAAGATGCAAAGGACATACCTCTTCACAGGGTATGTGCAAAAGAAGAGATTGAGTTACTGACTGCTCAGGCATGGCTGTCAGAGAACAAGCAGCTTGAGGATAAGGTAGCTAAAATGAGTGTACATACGGGTGCTGTGAGTGAGTATACACGCATGGTCATATGTCAAAAGGAAGAAGTTGTACAGAAGGCCTCAAAGAAAAGCCAGGGCAAGAAGAAGGATATCGAAACCCTGAAAATGATATTGCCACACAGTTTGTGTGTCGGCTTTGGAAATGTGACCGCAACTTCAGACAACCTTTTTCCAGGAACCGAAGAACCAAAGCTTCCAGAAGCAGCTGAAATTTTCATAAAAGCCACTTCAAACTGCTGTGGCTCAATGTGCAATAACTGCTGTTGCCTGGCCTTCATCAAATGTTGTTCCCATGTAAACCCTCAGTGTGCGAACGTATTAACCCAGCTCTTTACTGGTTTGGCCTGTGTTGGCTGCCTAGGTTGCTGTGCAGAACTTTGTTGTGGTCGAGGAAATGGCGGATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

572

Amino Acids

62.77

Weight (kDa)

6.2

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VWA PF00092 148 - 302 2e-12 von Willebrand factor type A domain
VWA_3 PF13768 148 - 304 1.5e-11 von Willebrand factor type A domain
VWA_2 PF13519 149 - 254 3.5e-11 von Willebrand factor type A domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 639
AccI GTMKAC 2 cut(s) 1151, 1322
AciI CCGC 5 cut(s) 5, 666, 883, 1458, 1707
AclWI GGATC 2 cut(s) 148, 530
AcsI RAATTY 4 cut(s) 189, 652, 1172, 1518
AcuI CTGAAG 1 cut(s) 1449
AfaI GTAC 5 cut(s) 93, 137, 260, 1299, 1359
AfiI CCNNNNNNNGG 4 cut(s) 14, 145, 639, 697
AgsI TTSAA 6 cut(s) 163, 199, 220, 321, 1123, 1539
AjnI CCWGG 5 cut(s) 406, 747, 1380, 1480, 1575
AjuI GAANNNNNNNTTGG 2 cut(s) 497, 529
AloI GAACNNNNNNTCC 2 cut(s) 80, 112
Alw26I GTCTC 4 cut(s) 54, 319, 772, 1001
AlwI GGATC 2 cut(s) 148, 530
AoxI GGCC 4 cut(s) 907, 1365, 1578, 1650
ApeKI GCWGC 4 cut(s) 920, 1267, 1511, 1662
ApoI RAATTY 4 cut(s) 189, 652, 1172, 1518
ArsI GACNNNNNNTTYG 2 cut(s) 1049, 1081
Asp700I GAANNNNTTC 1 cut(s) 856
AspA2I CCTAGG 1 cut(s) 1666
AspS9I GGNCC 1 cut(s) 907
AsuC2I CCSGG 1 cut(s) 126
AsuHPI GGTGA 2 cut(s) 345, 680
AsuNHI GCTAGC 2 cut(s) 206, 889
AvrII CCTAGG 1 cut(s) 1666
BarI GAAGNNNNNNTAC 2 cut(s) 1341, 1373
BbvI GCAGC 4 cut(s) 907, 1279, 1523, 1649
BccI CCATC 4 cut(s) 8, 219, 233, 752
BciT130I CCWGG 5 cut(s) 408, 749, 1382, 1482, 1577
BciVI GTATCC 1 cut(s) 490
BclI TGATCA 1 cut(s) 373
BcnI CCSGG 1 cut(s) 126
BcoDI GTCTC 4 cut(s) 54, 319, 772, 1001
BfaI CTAG 3 cut(s) 207, 890, 1667
BfuI GTATCC 1 cut(s) 490
BisI GCNGC 5 cut(s) 5, 921, 1268, 1512, 1663
BlnI CCTAGG 1 cut(s) 1666
BlsI GCNGC 5 cut(s) 6, 922, 1269, 1513, 1664
Bme1390I CCNGG 6 cut(s) 126, 408, 749, 1382, 1482, 1577
BmgT120I GGNCC 1 cut(s) 907
BmiI GGNNCC 2 cut(s) 908, 1486
BmrFI CCNGG 6 cut(s) 126, 408, 749, 1382, 1482, 1577
BmrI ACTGGG 1 cut(s) 257
BmsI GCATC 3 cut(s) 876, 907, 1171
BmtI GCTAGC 2 cut(s) 210, 893
BmuI ACTGGG 1 cut(s) 257
BplI GAGNNNNNCTC 6 cut(s) 12, 44, 34, 66, 374, 406
Bpu10I CCTNAGC 1 cut(s) 1242
BpuEI CTTGAG 2 cut(s) 512, 1292
BpuMI CCSGG 1 cut(s) 126
BsaAI YACGTR 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 54
BsaJI CCNNGG 5 cut(s) 360, 612, 1099, 1381, 1666
BsaWI WCCGGW 1 cut(s) 1111
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 145, 639, 697
Bse1I ACTGG 3 cut(s) 190, 252, 1648
Bse8I GATNNNNATC 1 cut(s) 372
BseBI CCWGG 5 cut(s) 408, 749, 1382, 1482, 1577
BseDI CCNNGG 5 cut(s) 360, 612, 1099, 1381, 1666
BseGI GGATG 3 cut(s) 94, 370, 891
BseJI GATNNNNATC 1 cut(s) 372
BseLI CCNNNNNNNGG 4 cut(s) 14, 145, 639, 697
BseMII CTCAG 6 cut(s) 65, 99, 642, 1152, 1256, 1625
BseNI ACTGG 3 cut(s) 190, 252, 1648
BseXI GCAGC 4 cut(s) 907, 1279, 1523, 1649
BseYI CCCAGC 1 cut(s) 1632
BsgI GTGCAG 1 cut(s) 1698
BshFI GGCC 4 cut(s) 909, 1367, 1580, 1652
BsiSI CCGG 2 cut(s) 126, 1112
BslFI GGGAC 2 cut(s) 104, 672
BslI CCNNNNNNNGG 4 cut(s) 14, 145, 639, 697
BsmAI GTCTC 4 cut(s) 54, 319, 772, 1001
BsmFI GGGAC 2 cut(s) 104, 672
BsmI GAATGC 1 cut(s) 511
BsnI GGCC 4 cut(s) 909, 1367, 1580, 1652
Bso31I GGTCTC 1 cut(s) 54
Bsp1407I TGTACA 2 cut(s) 1297, 1357
Bsp143I GATC 6 cut(s) 153, 373, 535, 1018, 1161, 1709
BspACI CCGC 5 cut(s) 5, 666, 883, 1458, 1707
BspANI GGCC 4 cut(s) 909, 1367, 1580, 1652
BspCNI CTCAG 6 cut(s) 64, 100, 641, 1151, 1255, 1624
BspLI GGNNCC 2 cut(s) 908, 1486
BspOI GCTAGC 2 cut(s) 210, 893
BspPI GGATC 2 cut(s) 148, 530
BspTNI GGTCTC 1 cut(s) 54
BsrGI TGTACA 2 cut(s) 1297, 1357
BsrI ACTGG 3 cut(s) 190, 252, 1648
BssECI CCNNGG 5 cut(s) 360, 612, 1099, 1381, 1666
BssMI GATC 6 cut(s) 153, 373, 535, 1018, 1161, 1709
BssNAI GTATAC 1 cut(s) 1323
BssT1I CCWWGG 3 cut(s) 360, 612, 1666
Bst1107I GTATAC 1 cut(s) 1323
Bst2UI CCWGG 5 cut(s) 408, 749, 1382, 1482, 1577
Bst4CI ACNGT 4 cut(s) 34, 96, 357, 1430
Bst6I CTCTTC 3 cut(s) 322, 1203, 1215
BstAPI GCANNNNNTGC 1 cut(s) 1566
BstAUI TGTACA 2 cut(s) 1297, 1357
BstBAI YACGTR 1 cut(s) 332
BstC8I GCNNGC 3 cut(s) 208, 664, 891
BstDEI CTNAG 7 cut(s) 51, 108, 501, 628, 1138, 1242, 1611
BstENI CCTNNNNNAGG 1 cut(s) 143
BstF5I GGATG 3 cut(s) 94, 370, 891
BstKTI GATC 6 cut(s) 156, 376, 538, 1021, 1164, 1712
BstMAI GTCTC 4 cut(s) 54, 319, 772, 1001
BstMBI GATC 6 cut(s) 153, 373, 535, 1018, 1161, 1709
BstMWI GCNNNNNNNGC 4 cut(s) 484, 1557, 1566, 1671
BstNI CCWGG 5 cut(s) 408, 749, 1382, 1482, 1577
BstSCI CCNGG 6 cut(s) 124, 406, 747, 1380, 1480, 1575
BstV1I GCAGC 4 cut(s) 907, 1279, 1523, 1649
BstX2I RGATCY 1 cut(s) 153
BstXI CCANNNNNNTGG 1 cut(s) 332
BstYI RGATCY 1 cut(s) 153
BstZ17I GTATAC 1 cut(s) 1323
BsuI GTATCC 1 cut(s) 490
BsuRI GGCC 4 cut(s) 909, 1367, 1580, 1652
BtgZI GCGATG 1 cut(s) 804
BtsCI GGATG 3 cut(s) 94, 370, 891
BtsIMutI CAGTG 2 cut(s) 39, 1619
Cac8I GCNNGC 3 cut(s) 208, 664, 891
Cfr13I GGNCC 1 cut(s) 907
CseI GACGC 3 cut(s) 674, 794, 935
Csp6I GTAC 5 cut(s) 92, 136, 259, 1298, 1358
CspCI CAANNNNNGTGG 2 cut(s) 1413, 1448
CviAII CATG 6 cut(s) 697, 914, 1168, 1248, 1330, 1601
CviQI GTAC 5 cut(s) 92, 136, 259, 1298, 1358
DdeI CTNAG 7 cut(s) 51, 108, 501, 628, 1138, 1242, 1611
DpnI GATC 6 cut(s) 155, 375, 537, 1020, 1163, 1711
DpnII GATC 6 cut(s) 153, 373, 535, 1018, 1161, 1709
Eam1104I CTCTTC 3 cut(s) 322, 1203, 1215
EarI CTCTTC 3 cut(s) 322, 1203, 1215
Eco130I CCWWGG 3 cut(s) 360, 612, 1666
Eco147I AGGCCT 1 cut(s) 1367
Eco31I GGTCTC 1 cut(s) 54
Eco32I GATATC 1 cut(s) 1399
Eco57I CTGAAG 1 cut(s) 1449
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 189
EcoRII CCWGG 5 cut(s) 406, 747, 1380, 1480, 1575
EcoRV GATATC 1 cut(s) 1399
EcoT14I CCWWGG 3 cut(s) 360, 612, 1666
ErhI CCWWGG 3 cut(s) 360, 612, 1666
FaeI CATG 6 cut(s) 700, 917, 1171, 1251, 1333, 1604
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FaqI GGGAC 2 cut(s) 104, 672
FatI CATG 6 cut(s) 696, 913, 1167, 1247, 1329, 1600
FauNDI CATATG 2 cut(s) 307, 1337
FbaI TGATCA 1 cut(s) 373
FblI GTMKAC 2 cut(s) 1151, 1322
Fnu4HI GCNGC 5 cut(s) 5, 921, 1268, 1512, 1663
FokI GGATG 3 cut(s) 101, 377, 898
Fsp4HI GCNGC 5 cut(s) 5, 921, 1268, 1512, 1663
FspBI CTAG 3 cut(s) 207, 890, 1667
GluI GCNGC 5 cut(s) 5, 921, 1268, 1512, 1663
GsaI CCCAGC 1 cut(s) 1636
HaeIII GGCC 4 cut(s) 909, 1367, 1580, 1652
HapII CCGG 2 cut(s) 126, 1112
HgaI GACGC 3 cut(s) 674, 794, 935
Hin1II CATG 6 cut(s) 700, 917, 1171, 1251, 1333, 1604
HincII GTYRAC 1 cut(s) 1152
HindII GTYRAC 1 cut(s) 1152
HindIII AAGCTT 1 cut(s) 1499
HinfI GANTC 7 cut(s) 21, 545, 626, 985, 1072, 1095, 1134
HpaII CCGG 2 cut(s) 126, 1112
HphI GGTGA 2 cut(s) 345, 680
Hpy166II GTNNAC 8 cut(s) 99, 169, 245, 731, 1152, 1298, 1323, 1606
Hpy188I TCNGA 5 cut(s) 54, 437, 1100, 1258, 1468
Hpy188III TCNNGA 5 cut(s) 107, 539, 1022, 1055, 1505
Hpy8I GTNNAC 8 cut(s) 99, 169, 245, 731, 1152, 1298, 1323, 1606
Hpy99I CGWCG 1 cut(s) 951
HpyAV CCTTC 6 cut(s) 214, 432, 897, 1357, 1387, 1591
HpyCH4III ACNGT 4 cut(s) 34, 96, 357, 1430
HpyCH4IV ACGT 2 cut(s) 331, 1623
HpyF10VI GCNNNNNNNGC 4 cut(s) 484, 1557, 1566, 1671
HpyF3I CTNAG 7 cut(s) 51, 108, 501, 628, 1138, 1242, 1611
HpySE526I ACGT 2 cut(s) 331, 1623
Hsp92II CATG 6 cut(s) 700, 917, 1171, 1251, 1333, 1604
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 6 cut(s) 153, 373, 535, 1018, 1161, 1709
LmnI GCTCC 1 cut(s) 203
Lsp1109I GCAGC 4 cut(s) 907, 1279, 1523, 1649
LweI GCATC 3 cut(s) 876, 907, 1171
MaeI CTAG 3 cut(s) 207, 890, 1667
MaeII ACGT 2 cut(s) 331, 1623
MaeIII GTNAC 7 cut(s) 57, 351, 668, 751, 815, 1230, 1453
MalI GATC 6 cut(s) 155, 375, 537, 1020, 1163, 1711
MboI GATC 6 cut(s) 153, 373, 535, 1018, 1161, 1709
MfeI CAATTG 1 cut(s) 158
MflI RGATCY 1 cut(s) 153
MluCI AATT 6 cut(s) 158, 189, 652, 1106, 1172, 1518
MlyI GAGTC 3 cut(s) 30, 620, 1081
MmeI TCCRAC 1 cut(s) 741
MroXI GAANNNNTTC 1 cut(s) 856
MseI TTAA 7 cut(s) 255, 528, 567, 599, 693, 1128, 1628
MslI CAYNNNNRTG 1 cut(s) 1305
MspA1I CMGCKG 2 cut(s) 1142, 1514
MspI CCGG 2 cut(s) 126, 1112
MspR9I CCNGG 6 cut(s) 126, 408, 749, 1382, 1482, 1577
MunI CAATTG 1 cut(s) 158
Mva1269I GAATGC 1 cut(s) 511
MvaI CCWGG 5 cut(s) 408, 749, 1382, 1482, 1577
MwoI GCNNNNNNNGC 4 cut(s) 484, 1557, 1566, 1671
NciI CCSGG 1 cut(s) 126
NdeI CATATG 2 cut(s) 307, 1337
NdeII GATC 6 cut(s) 153, 373, 535, 1018, 1161, 1709
NheI GCTAGC 2 cut(s) 206, 889
NlaIII CATG 6 cut(s) 700, 917, 1171, 1251, 1333, 1604
NlaIV GGNNCC 2 cut(s) 908, 1486
NmuCI GTSAC 4 cut(s) 351, 668, 815, 1453
PceI AGGCCT 1 cut(s) 1367
PctI GAATGC 1 cut(s) 511
PdmI GAANNNNTTC 1 cut(s) 856
PfeI GAWTC 4 cut(s) 545, 985, 1095, 1134
PflMI CCANNNNNTGG 1 cut(s) 639
PfoI TCCNGGA 2 cut(s) 406, 1480
PkrI GCNGC 5 cut(s) 6, 922, 1269, 1513, 1664
PleI GAGTC 3 cut(s) 29, 620, 1080
PpsI GAGTC 3 cut(s) 29, 620, 1080
Ppu21I YACGTR 1 cut(s) 332
Psp6I CCWGG 5 cut(s) 406, 747, 1380, 1480, 1575
PspFI CCCAGC 1 cut(s) 1632
PspGI CCWGG 5 cut(s) 406, 747, 1380, 1480, 1575
PspN4I GGNNCC 2 cut(s) 908, 1486
PspPI GGNCC 1 cut(s) 907
PsuI RGATCY 1 cut(s) 153
PvuII CAGCTG 2 cut(s) 1142, 1514
RsaI GTAC 5 cut(s) 93, 137, 260, 1299, 1359
RsaNI GTAC 5 cut(s) 92, 136, 259, 1298, 1358
RseI CAYNNNNRTG 1 cut(s) 1305
SalI GTCGAC 1 cut(s) 1150
SaqAI TTAA 7 cut(s) 255, 528, 567, 599, 693, 1128, 1628
SatI GCNGC 5 cut(s) 5, 921, 1268, 1512, 1663
Sau3AI GATC 6 cut(s) 153, 373, 535, 1018, 1161, 1709
Sau96I GGNCC 1 cut(s) 907
SchI GAGTC 3 cut(s) 30, 620, 1081
ScrFI CCNGG 6 cut(s) 126, 408, 749, 1382, 1482, 1577
SfaNI GCATC 3 cut(s) 876, 907, 1171
SmiMI CAYNNNNRTG 1 cut(s) 1305
SmlI CTYRAG 2 cut(s) 491, 1271
SmoI CTYRAG 2 cut(s) 491, 1271
Sse9I AATT 6 cut(s) 158, 189, 652, 1106, 1172, 1518
SseBI AGGCCT 1 cut(s) 1367
SsiI CCGC 5 cut(s) 5, 666, 883, 1458, 1707
SspI AATATT 1 cut(s) 679
SspMI CTAG 3 cut(s) 207, 890, 1667
StuI AGGCCT 1 cut(s) 1367
StyD4I CCNGG 6 cut(s) 124, 406, 747, 1380, 1480, 1575
StyI CCWWGG 3 cut(s) 360, 612, 1666
TaaI ACNGT 4 cut(s) 34, 96, 357, 1430
TaiI ACGT 2 cut(s) 334, 1626
TaqI TCGA 9 cut(s) 67, 276, 624, 768, 949, 1151, 1164, 1401, 1696
TasI AATT 6 cut(s) 158, 189, 652, 1106, 1172, 1518
TatI WGTACW 2 cut(s) 1297, 1357
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 4 cut(s) 545, 985, 1095, 1134
Tru1I TTAA 7 cut(s) 255, 528, 567, 599, 693, 1128, 1628
Tru9I TTAA 7 cut(s) 255, 528, 567, 599, 693, 1128, 1628
TscAI CASTG 2 cut(s) 39, 1619
TseFI GTSAC 4 cut(s) 351, 668, 815, 1453
TseI GCWGC 4 cut(s) 920, 1267, 1511, 1662
Tsp45I GTSAC 4 cut(s) 351, 668, 815, 1453
TspDTI ATGAA 6 cut(s) 537, 576, 966, 1184, 1513, 1573
TspRI CASTG 2 cut(s) 39, 1619
Van91I CCANNNNNTGG 1 cut(s) 639
XagI CCTNNNNNAGG 1 cut(s) 143
XapI RAATTY 4 cut(s) 189, 652, 1172, 1518
XcmI CCANNNNNNNNNTGG 2 cut(s) 1009, 1640
XmaJI CCTAGG 1 cut(s) 1666
XmiI GTMKAC 2 cut(s) 1151, 1322
XmnI GAANNNNTTC 1 cut(s) 856
XspI CTAG 3 cut(s) 207, 890, 1667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.