Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010352

Physical Location & Seq

Genomic Coordinates Forward (+)

3895742 .. 3896455

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0050700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTCCCCCAAAACCACTCTCAACCTAGCCAACAGATCCAGCGATGGGGAAGACGAACGGCTTCATCGGCGTCGACGCTGCCGTGAACCACCGCATCATAAGGCTGATAAGCACAGGAAGTCTAAGAAGAAGAAGAAGAGAAGTGAGAAGCTGAAGTTGAACGAGGAGGAGGCTAACAAGTCTCTGTACATATGTCACATTGAGCACCACCCTGGAAGGTGGGTCGCTTATGTTGTCCGCGCCAGCAACTTGTCCGATTTGTTGTTGTCATCAGAAGACGATGATGGTTTGCAATTACGGCAAGTGGGTTATAAGGCCGGGGATGAACTCCCGGGGTCTGTGGGTTGCGGTGTGTGGGGCTCCCGGATTGTTTTCGCCGCCGGCATGAAACCCTGCGGCCGTATGCCTTCACTTGATCGTCCCGACATAGTTTGGCATAGAGATGTTTACGCCTTTGAAACTGACCCCAACAAGCACAAGCAGCCTCGTGATAATAGTAGAATTACCAAGATGGGTGGCACATTAGTTGAAGCCAAGTTCCTTCCTCTGATGGAGGAGGTGGGGGGCAAACTGTATGCACTTTCATATAGGCTGGTGGCTGATCCTCCCTCATTTGAGGTATTCGACCCGAAAGTGGGGAGTTGGGCGCCCCTGCCCCAGCCTCCATTATTCAAACGTCTTGGTCAGTATAACCGCGGTGGCTTCCTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VWA_3

Protein Analysis

237

Amino Acids

26.92

Weight (kDa)

9.58

Isoelectric Point (pI)

60.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19110
fragaria_vesca	FvH4_1g08960 FvH4_1g08960 FvH4_1g08960 FvH4_1g08960
malus_domestica	MD02G1095100.v1.1 MD15G1219900.v1.1
prunus_persica	Prupe.7G196100_v2.0.a1 Prupe.7G196100_v2.0.a1
pyrus_communis	pycom02g07510 pycom15g19500
rosa_chinensis	RchiOBHm_Chr2g0095411
rosa_laevigata	RLG00000016563
rosa_multiflora	Rmu_ssc0000183.1_g000044
rosa_roxburghii	Rroxscaffold_2G00146390
rosa_rugosa	Rorug02G0050700
rosa_samantha	Rh2AG098800 Rh2BG100000 Rh2CG102000 Rh2DG099600
rosa_wichuraiana	Rw2G007460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	646
AccI	GTMKAC	1 cut(s)	73
AccII	CGCG	2 cut(s)	240, 696
AciI	CCGC	7 cut(s)	92, 238, 348, 378, 396, 694, 696
AclWI	GGATC	2 cut(s)	30, 596
AcoI	YGGCCR	1 cut(s)	397
AcuI	CTGAAG	1 cut(s)	173
AcyI	GRCGYC	2 cut(s)	70, 647
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	3 cut(s)	45, 634, 635
AgsI	TTSAA	4 cut(s)	160, 458, 530, 673
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	2 cut(s)	30, 596
Ama87I	CYCGRG	1 cut(s)	331
AoxI	GGCC	2 cut(s)	315, 397
ApeKI	GCWGC	2 cut(s)	78, 481
Asp700I	GAANNNNTTC	1 cut(s)	60
AspLEI	GCGC	2 cut(s)	242, 649
AsuC2I	CCSGG	4 cut(s)	319, 332, 333, 364
AvaI	CYCGRG	1 cut(s)	331
BanI	GGYRCC	1 cut(s)	646
BanII	GRGCYC	1 cut(s)	362
BauI	CACGAG	1 cut(s)	486
BbsI	GAAGAC	2 cut(s)	57, 282
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	65, 493
BccI	CCATC	4 cut(s)	38, 278, 505, 544
BceAI	ACGGC	4 cut(s)	66, 74, 314, 384
BciT130I	CCWGG	1 cut(s)	213
BcnI	CCSGG	4 cut(s)	319, 332, 333, 364
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	650
BisI	GCNGC	4 cut(s)	79, 378, 397, 482
BlsI	GCNGC	4 cut(s)	80, 379, 398, 483
Bme1390I	CCNGG	5 cut(s)	213, 319, 332, 333, 364
BmeT110I	CYCGRG	1 cut(s)	331
BmiI	GGNNCC	2 cut(s)	361, 648
BmrFI	CCNGG	5 cut(s)	213, 319, 332, 333, 364
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	2 cut(s)	57, 282
BpuMI	CCSGG	4 cut(s)	319, 332, 333, 364
BsaHI	GRCGYC	2 cut(s)	70, 647
BsaJI	CCNNGG	5 cut(s)	211, 318, 331, 332, 694
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 634, 635
Bse118I	RCCGGY	1 cut(s)	380
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	5 cut(s)	211, 318, 331, 332, 694
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	3 cut(s)	45, 634, 635
BseRI	GAGGAG	3 cut(s)	179, 182, 569
BseX3I	CGGCCG	1 cut(s)	397
BseXI	GCAGC	2 cut(s)	65, 493
BseYI	CCCAGC	1 cut(s)	657
Bsh1236I	CGCG	2 cut(s)	240, 696
Bsh1285I	CGRYCG	1 cut(s)	400
BshFI	GGCC	2 cut(s)	317, 399
BshNI	GGYRCC	1 cut(s)	646
BsiEI	CGRYCG	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	331
BsiSI	CCGG	4 cut(s)	318, 332, 364, 381
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	3 cut(s)	45, 634, 635
BsmAI	GTCTC	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	405
BsnI	GGCC	2 cut(s)	317, 399
BsoBI	CYCGRG	1 cut(s)	331
Bsp1286I	GDGCHC	2 cut(s)	207, 362
Bsp1407I	TGTACA	1 cut(s)	186
Bsp143I	GATC	3 cut(s)	35, 415, 601
BspACI	CCGC	7 cut(s)	92, 238, 348, 378, 396, 694, 696
BspANI	GGCC	2 cut(s)	317, 399
BspFNI	CGCG	2 cut(s)	240, 696
BspLI	GGNNCC	2 cut(s)	361, 648
BspPI	GGATC	2 cut(s)	30, 596
BspT107I	GGYRCC	1 cut(s)	646
BsrFI	RCCGGY	1 cut(s)	380
BsrGI	TGTACA	1 cut(s)	186
BssAI	RCCGGY	1 cut(s)	380
BssECI	CCNNGG	5 cut(s)	211, 318, 331, 332, 694
BssMI	GATC	3 cut(s)	35, 415, 601
BssNI	GRCGYC	2 cut(s)	70, 647
BssSI	CACGAG	1 cut(s)	486
Bst2BI	CACGAG	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	573
Bst6I	CTCTTC	1 cut(s)	131
BstACI	GRCGYC	2 cut(s)	70, 647
BstAUI	TGTACA	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	244, 382
BstDEI	CTNAG	1 cut(s)	123
BstDSI	CCRYGG	1 cut(s)	694
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	2 cut(s)	240, 696
BstH2I	RGCGCY	1 cut(s)	650
BstHHI	GCGC	2 cut(s)	242, 649
BstKTI	GATC	3 cut(s)	38, 418, 604
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	3 cut(s)	35, 415, 601
BstMCI	CGRYCG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 298, 481
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	5 cut(s)	211, 317, 330, 331, 362
BstUI	CGCG	2 cut(s)	240, 696
BstV1I	GCAGC	2 cut(s)	65, 493
BstV2I	GAAGAC	2 cut(s)	57, 282
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
BstZI	CGGCCG	1 cut(s)	397
BsuRI	GGCC	2 cut(s)	317, 399
BtgI	CCRYGG	1 cut(s)	694
BtgZI	GCGATG	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	328
Cac8I	GCNNGC	2 cut(s)	244, 382
CfoI	GCGC	2 cut(s)	242, 649
Cfr10I	RCCGGY	1 cut(s)	380
Cfr42I	CCGCGG	1 cut(s)	697
Cfr9I	CCCGGG	1 cut(s)	331
CseI	GACGC	2 cut(s)	59, 84
Csp6I	GTAC	1 cut(s)	187
CspCI	CAANNNNNGTGG	2 cut(s)	496, 531
CviAII	CATG	1 cut(s)	385
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	1 cut(s)	123
DinI	GGCGCC	1 cut(s)	648
DpnI	GATC	3 cut(s)	37, 417, 603
DpnII	GATC	3 cut(s)	35, 415, 601
EaeI	YGGCCR	1 cut(s)	397
EagI	CGGCCG	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
EclXI	CGGCCG	1 cut(s)	397
Eco24I	GRGCYC	1 cut(s)	362
Eco52I	CGGCCG	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	362
EgeI	GGCGCC	1 cut(s)	648
EheI	GGCGCC	1 cut(s)	648
FaeI	CATG	1 cut(s)	388
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	1 cut(s)	384
FauNDI	CATATG	1 cut(s)	191
FblI	GTMKAC	1 cut(s)	73
Fnu4HI	GCNGC	4 cut(s)	79, 378, 397, 482
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	362
Fsp4HI	GCNGC	4 cut(s)	79, 378, 397, 482
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	2 cut(s)	241, 648
GluI	GCNGC	4 cut(s)	79, 378, 397, 482
GsaI	CCCAGC	1 cut(s)	661
HaeII	RGCGCY	1 cut(s)	650
HaeIII	GGCC	2 cut(s)	317, 399
HapII	CCGG	4 cut(s)	318, 332, 364, 381
HgaI	GACGC	2 cut(s)	59, 84
HhaI	GCGC	2 cut(s)	242, 649
Hin1I	GRCGYC	2 cut(s)	70, 647
Hin1II	CATG	1 cut(s)	388
Hin6I	GCGC	2 cut(s)	240, 647
HinP1I	GCGC	2 cut(s)	240, 647
HincII	GTYRAC	1 cut(s)	74
HindII	GTYRAC	1 cut(s)	74
HpaII	CCGG	4 cut(s)	318, 332, 364, 381
Hpy166II	GTNNAC	3 cut(s)	74, 86, 448
Hpy188I	TCNGA	3 cut(s)	256, 274, 549
Hpy188III	TCNNGA	2 cut(s)	422, 488
Hpy8I	GTNNAC	3 cut(s)	74, 86, 448
Hpy99I	CGWCG	2 cut(s)	75, 78
HpyAV	CCTTC	3 cut(s)	210, 417, 551
HpyCH4III	ACNGT	1 cut(s)	573
HpyCH4IV	ACGT	1 cut(s)	676
HpyCH4V	TGCA	2 cut(s)	292, 578
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 298, 481
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	676
Hsp92I	GRCGYC	2 cut(s)	70, 647
Hsp92II	CATG	1 cut(s)	388
HspAI	GCGC	2 cut(s)	240, 647
KasI	GGCGCC	1 cut(s)	646
KroI	GCCGGC	1 cut(s)	380
KroNI	GCCGGC	1 cut(s)	382
KspI	CCGCGG	1 cut(s)	697
Kzo9I	GATC	3 cut(s)	35, 415, 601
LmnI	GCTCC	1 cut(s)	365
Lsp1109I	GCAGC	2 cut(s)	65, 493
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	676
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	3 cut(s)	37, 417, 603
MboI	GATC	3 cut(s)	35, 415, 601
MboII	GAAGA	6 cut(s)	62, 139, 142, 145, 148, 287
MflI	RGATCY	1 cut(s)	35
MhlI	GDGCHC	2 cut(s)	207, 362
MluCI	AATT	2 cut(s)	293, 501
Mly113I	GGCGCC	1 cut(s)	647
MroNI	GCCGGC	1 cut(s)	380
MroXI	GAANNNNTTC	1 cut(s)	60
MseI	TTAA	1 cut(s)	712
MslI	CAYNNNNRTG	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	696
MspI	CCGG	4 cut(s)	318, 332, 364, 381
MspR9I	CCNGG	5 cut(s)	213, 319, 332, 333, 364
MvaI	CCWGG	1 cut(s)	213
MvnI	CGCG	2 cut(s)	240, 696
MwoI	GCNNNNNNNGC	3 cut(s)	67, 298, 481
NaeI	GCCGGC	1 cut(s)	382
NarI	GGCGCC	1 cut(s)	647
NciI	CCSGG	4 cut(s)	319, 332, 333, 364
NdeI	CATATG	1 cut(s)	191
NdeII	GATC	3 cut(s)	35, 415, 601
NgoMIV	GCCGGC	1 cut(s)	380
NlaIII	CATG	1 cut(s)	388
NlaIV	GGNNCC	2 cut(s)	361, 648
NmuCI	GTSAC	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	1 cut(s)	79
PdiI	GCCGGC	1 cut(s)	382
PdmI	GAANNNNTTC	1 cut(s)	60
PfoI	TCCNGGA	1 cut(s)	362
PkrI	GCNGC	4 cut(s)	80, 379, 398, 483
PluTI	GGCGCC	1 cut(s)	650
PsiI	TTATAA	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	211
PspFI	CCCAGC	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	2 cut(s)	361, 648
PsuI	RGATCY	1 cut(s)	35
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	441
SacII	CCGCGG	1 cut(s)	697
SalI	GTCGAC	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	712
SatI	GCNGC	4 cut(s)	79, 378, 397, 482
Sau3AI	GATC	3 cut(s)	35, 415, 601
ScrFI	CCNGG	5 cut(s)	213, 319, 332, 333, 364
SduI	GDGCHC	2 cut(s)	207, 362
SetI	ASST	6 cut(s)	27, 153, 221, 561, 621, 679
SfaNI	GCATC	1 cut(s)	103
SfoI	GGCGCC	1 cut(s)	648
Sfr303I	CCGCGG	1 cut(s)	697
SgrBI	CCGCGG	1 cut(s)	697
SgrDI	CGTCGACG	1 cut(s)	72
SmaI	CCCGGG	1 cut(s)	333
SmiMI	CAYNNNNRTG	1 cut(s)	441
Sse9I	AATT	2 cut(s)	293, 501
SsiI	CCGC	7 cut(s)	92, 238, 348, 378, 396, 694, 696
SspDI	GGCGCC	1 cut(s)	646
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	5 cut(s)	211, 317, 330, 331, 362
TaaI	ACNGT	1 cut(s)	573
TaiI	ACGT	1 cut(s)	679
TaqI	TCGA	2 cut(s)	73, 624
TasI	AATT	2 cut(s)	293, 501
TatI	WGTACW	1 cut(s)	186
TauI	GCSGC	2 cut(s)	380, 399
Tru1I	TTAA	1 cut(s)	712
Tru9I	TTAA	1 cut(s)	712
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	2 cut(s)	78, 481
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	4 cut(s)	53, 339, 401, 573
TspMI	CCCGGG	1 cut(s)	331
XmaI	CCCGGG	1 cut(s)	331
XmiI	GTMKAC	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	60
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.