Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0014218

Physical Location & Seq

Genomic Coordinates Reverse (-)

5533940 .. 5542112

Gene Structure 8173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g10170.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2814 bp

ATGTGGCAGAACCGGTCATACAACAAGAGAACCAGAGGAGGCAAAATCACCAAGGTCGTCAGAGAGCACTATCTCCGCGACGATATATACTGTGGAGCTCCGGTATGCCAAAAGTGCAACGCCGCCAATGCTCGCCTGAGCGCCGCCGCTTCCACCGTCCTCATCCTCGACACCAATGTGGTGCTCAACCAGATTGATTTGATTGAGAATGCAGCCATTAACGACGTGGTGGTGCTTTCGATTGTGCTCGAGGAGGTCAAGAACAGGAACTTGTCCGTTTACAATAGACTTAGAGCCATCTGTAGCAATTCGTTGCGGAACTTCTATGTTTTCTCTAATGAGCATCACAAGGATACATATGTCACAGACATGAGTGGAGAAAGTAAAAATGACAGAAATGATAGAGCGATTCGGGTGGCTGCTCAGTGGTATCAAACACATCTGGCTGGATCAGTTCGTATTTTGCTTTTAACTAATGACAAAGAGAATAAGAGGAAGGCTATTGAAGAGGGGATTACTGCAGAGACAGTGGAGTCGTATGTGAGATCATTGAGCCGACCAGATTTGCTTGATCTGCTTGTGCATCCTGCATCGGCAGAAGTGATCATGGAGGAGGCTGAAGATTTAAGACCATCAAAGAAGAAAGTCCTTTATGCCGAGCATAAACCCTTGTCAGAGATTACCTCTGGTATCAAGATTGGTATGTACCATCAAGGAAAACTTAGGGTGAACCGATACAACCCTTTTGAAGCATATGTTGCAAGCCAGAGCCTCAGTGATGAAATAATAATTTATGGACGTGCAAACATGAATAGGGCTTTTGATGGTGATATAGTGGCAGTCCAGCTTCTGCCGCAGGAGCAATGGCATGAGGAGGAAAATCTTGCTATAGCAGATGAAGAGGATGATGCAGAAGAAGGTGTTCATCTGGTCCCTGGCAGTGCTGATGATGTTCCTAGAACCACAGCTCAACCACAAGATTCTGCTGGAGAAACTTGTTCGGTTTCAAATCGTCCATCTGGCCGGATTGTTGGAATTATAAAGCGGAATTGGCACTCTTATTGTGGATCGTTGGAGCCGATGTCTAAGCCTGCTGGTAGTGGTGGTGTTGCCCATGCCTTATTTGTCTCAAAAGATTGTAGGATTCCTAAGATTCGAATTCAAACTCGACAGCTAGAAAATCTTTTGGACAAGAGAATTACTGTGGCGGTTGATTCTTGGGACTGTTCGTCTCGTTATCCGTCTGGCCATTATGTACGAACCATAGGACAAATTGGTGATAAAGATACTGAAACTGAGGTGGTCTTGATTGAGAATGATATAAACACAAGACCCTTTTCTACTCAAGTTCTAGCATGCTTGCCGCCACTGCCATGGTCCGTATCTTCTGAAGATTTGGCAAATCCTGTTAGGGAGGATTTGCGACAATTACGTGTCTTTAGTGTGGACCCTCCTGGATGCAGGGATATTGACGATGCACTTCACTGTACAGCTCTTCCAAATGGAAATTACGAAGTTGGTGTCCATATTGCCGATGTTACAAATTTTGTACTTCCTGGTAACCCTCTTGACGATGAGGCTTCACAAAGGGGCACTTCGGTCTACCTTGTCGATCGACGCATTGACATGCTCCCGAAACCTCTGACAGAAGATATATGTTCGCTCCGAGCTGATGTGGAAAGGCTAGCCTTTTCTGTTCTTTGGGAAATGACATCTGAAGCTGAGATTATATCTACTAGATACACAAAAAGTGTCATTAAATCTTCTGCAGCATTGTCTTACGTTGAAGCTCAAGCAAGGATGGATGATAGCCGGTTGACGGATCCAGTAACTACAGATTTGAGAAACATGAACAGATTAGCAAAGATAATGAGGTCAAGACGTATTGAGAGAGGAGCCTTAACTCTTGCATCTGCGGAAGTCAAATTTCAAATTGACACTGAGACTCATGATCCCCTTGATATTGGTATGTACCAGATACGTGAAGCAAACCAAATGGTTGAGGAGTTTATGCTTGCTGCTAATGTTTCAGTTGCTGAAAAGATTCTTAAACATTATCCTTCGTGCTCACTATTGAGGCGTCATCCTACTCCGACACGAGAGATGCTTGAACCTTTGTTACGTACAGCTGCTGCTGTTGGTCTCAACTTGGATGTTTCATCATCAAAAGCACTGGCTGATTCACTTGACCATGCTGTGGGTGACGATCCTTACTTTAATAAGCTTATCCGTATATTGGCAACTAGATGCATGACACAGGCAGTTTATTTCTGTAGTGGGGAACTCACCCCTCCAGAATATCTTCATTATGGGCTTGCAGCCCCTCTGTATACCCATTTTACCTCTCCTATAAGGAGATATGCAGATGTCATAGTGCACAGATTGCTTGCTGCATCTCTGGGTATACAAAAGCTTCCAACTGTATTCGAAGATGGACACCAACTCAATAGTATTGCTGAAAATTTAAACTATCGACATAGGAATGCCCAGATGGCAAGCCGGGCCTCAGTGGAACTCCACACTCTGATTTTTTTCAAAACACGGCCAACGGACACGGAGGCAAGAGTTGTGAGGATAAGATCCAATGGATTTTTTGTATTTGTCCCCAAGTTTGGCATAGAAGGGCCTGTGTACTTGACCCCGAGAGGTCAGAAGGGAAGTGGAGAATGGTATGTAGATGAGCAACAGCAGAAGATTAGAAAAATGGATGGTAGCATTTCATACAGTGTTCTCCAGACGGTGAGAATTCATTTGGAGATTGTCGAGCCCCAGCCCAATAGACCAAAACTCGAGCTTAAGCTGTTGGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000176 GO:0000178 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004527 GO:0004532 GO:0004540 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019439 GO:0019899 GO:0022613 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0051020 GO:0065007 GO:0065009 GO:0070013 GO:0071034 GO:0071043 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0098772 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PIN_4 RNB Rrp44_CSD1 Rrp44_S1

Protein Analysis

938

Amino Acids

105.33

Weight (kDa)

6.03

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIN_4	PF13638	54 - 177	6.6e-21	PIN domain
Rrp44_CSD1	PF17216	222 - 318	1.9e-13	Rrp44-like cold shock domain
OB_HELZ2	PF25049	235 - 292	1.3e-06	3'-5' exoribonuclease HELZ2, OB-fold domain
OB_Dis3	PF17849	373 - 440	1.3e-21	Dis3-like cold-shock domain 2 (CSD2)
RNB	PF00773	471 - 569	3.4e-38	RNB domain
RNB	PF00773	614 - 847	2.1e-53	RNB domain
Rrp44_S1	PF17215	898 - 967	6.3e-08	S1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17510 AT2G17510
fragaria_vesca	FvH4_1g10170 FvH4_1g10170
malus_domestica	MD02G1113900.v1.1 MD15G1229000.v1.1
prunus_persica	Prupe.7G185100_v2.0.a1
pyrus_communis	pycom02g08870 pycom15g20420
rosa_chinensis	RchiOBHm_Chr2g0096961
rosa_laevigata	RLG00000016687
rosa_multiflora	Rmu_sc0001651.1_g000008
rosa_roxburghii	Rroxscaffold_2G00145120
rosa_rugosa	Rorug02G0062300
rosa_samantha	Rh2AG110300 Rh2BG112100
rosa_wichuraiana	Rw2G008530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1040
AasI	GACNNNNNNGTC	1 cut(s)	532
AccB7I	CCANNNNNTGG	1 cut(s)	2197
AccI	GTMKAC	3 cut(s)	1602, 2330, 2404
AccII	CGCG	1 cut(s)	78
AclWI	GGATC	7 cut(s)	457, 1075, 1817, 1830, 1946, 2201, 2574
AcoI	YGGCCR	3 cut(s)	1021, 1246, 2543
AcsI	RAATTY	5 cut(s)	1158, 1543, 1925, 2461, 2745
AcuI	CTGAAG	3 cut(s)	639, 1410, 1737
AcyI	GRCGYC	1 cut(s)	2080
AfaI	GTAC	7 cut(s)	707, 1257, 1489, 1551, 1973, 2125, 2633
AfiI	CCNNNNNNNGG	4 cut(s)	1819, 2197, 2236, 2612
AflII	CTTAAG	1 cut(s)	2795
AflIII	ACRYGT	1 cut(s)	1432
AgeI	ACCGGT	1 cut(s)	12
AgsI	TTSAA	8 cut(s)	506, 749, 1008, 1163, 1787, 1931, 2111, 2536
AhdI	GACNNNNNGTC	1 cut(s)	1228
AjiI	CACGTC	2 cut(s)	226, 800
AjnI	CCWGG	3 cut(s)	934, 1453, 1555
AleI	CACNNNNGTG	1 cut(s)	176
Alw21I	GWGCWC	6 cut(s)	69, 100, 186, 249, 2069, 2379
Alw26I	GTCTC	5 cut(s)	518, 1132, 1236, 1937, 2147
Alw44I	GTGCAC	1 cut(s)	2375
AlwI	GGATC	7 cut(s)	457, 1075, 1817, 1830, 1946, 2201, 2574
AlwNI	CAGNNNCTG	3 cut(s)	850, 2036, 2132
Ama87I	CYCGRG	3 cut(s)	248, 2641, 2789
AoxI	GGCC	5 cut(s)	1021, 1246, 2502, 2543, 2624
ApaLI	GTGCAC	1 cut(s)	2375
ApeKI	GCWGC	8 cut(s)	212, 419, 1769, 2018, 2129, 2132, 2318, 2390
ApoI	RAATTY	5 cut(s)	1158, 1543, 1925, 2461, 2745
ArsI	GACNNNNNNTTYG	2 cut(s)	1506, 1538
AsiGI	ACCGGT	1 cut(s)	12
Asp700I	GAANNNNTTC	3 cut(s)	921, 2043, 2301
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	5 cut(s)	931, 1377, 1447, 2502, 2624
AsuC2I	CCSGG	1 cut(s)	2501
AsuHPI	GGTGA	7 cut(s)	40, 739, 839, 1289, 2213, 2278, 2752
AsuII	TTCGAA	2 cut(s)	1156, 2427
AsuNHI	GCTAGC	1 cut(s)	1684
AvaI	CYCGRG	3 cut(s)	248, 2641, 2789
AvaII	GGWCC	3 cut(s)	931, 1377, 1447
BaeGI	GKGCMC	2 cut(s)	1595, 2379
BaeI	ACNNNNGTAYC	2 cut(s)	345, 378
BalI	TGGCCA	1 cut(s)	1248
BamHI	GGATCC	1 cut(s)	1822
BanII	GRGCYC	2 cut(s)	100, 2769
BauI	CACGAG	1 cut(s)	2097
Bbv12I	GWGCWC	6 cut(s)	69, 100, 186, 249, 2069, 2379
BbvI	GCAGC	8 cut(s)	224, 406, 1781, 2005, 2116, 2119, 2330, 2377
BccI	CCATC	9 cut(s)	305, 640, 717, 818, 1024, 1795, 2426, 2485, 2702
BceAI	ACGGC	1 cut(s)	2558
BciT130I	CCWGG	3 cut(s)	936, 1455, 1557
BciVI	GTATCC	1 cut(s)	346
BclI	TGATCA	1 cut(s)	603
BcnI	CCSGG	1 cut(s)	2501
BcoDI	GTCTC	5 cut(s)	518, 1132, 1236, 1937, 2147
BfaI	CTAG	6 cut(s)	957, 1175, 1352, 1685, 1737, 2244
BfmI	CTRYAG	6 cut(s)	301, 519, 888, 1767, 1833, 2272
BfoI	RGCGCY	1 cut(s)	144
BfrI	CTTAAG	1 cut(s)	2795
BfuI	GTATCC	1 cut(s)	346
BglI	GCCNNNNNGGC	1 cut(s)	2492
Bme1390I	CCNGG	4 cut(s)	936, 1455, 1557, 2501
Bme18I	GGWCC	3 cut(s)	931, 1377, 1447
BmeRI	GACNNNNNGTC	1 cut(s)	1228
BmeT110I	CYCGRG	3 cut(s)	248, 2641, 2789
BmgBI	CACGTC	2 cut(s)	226, 800
BmgT120I	GGNCC	5 cut(s)	931, 1377, 1447, 2502, 2624
BmiI	GGNNCC	5 cut(s)	933, 1077, 1449, 1824, 1897
BmrFI	CCNGG	4 cut(s)	936, 1455, 1557, 2501
BmtI	GCTAGC	1 cut(s)	1688
BplI	GAGNNNNNCTC	2 cut(s)	668, 700
BpmI	CTGGAG	3 cut(s)	1008, 2277, 2717
Bpu10I	CCTNAGC	1 cut(s)	137
Bpu14I	TTCGAA	2 cut(s)	1156, 2427
BpuEI	CTTGAG	2 cut(s)	1329, 1776
BpuMI	CCSGG	1 cut(s)	2501
BsaAI	YACGTR	3 cut(s)	1433, 1982, 2123
BsaHI	GRCGYC	1 cut(s)	2080
BsaI	GGTCTC	1 cut(s)	2147
BsaJI	CCNNGG	3 cut(s)	51, 934, 1373
BsaWI	WCCGGW	2 cut(s)	12, 100
BsaXI	ACNNNNNCTCC	4 cut(s)	87, 117, 1067, 1097
Bsc4I	CCNNNNNNNGG	4 cut(s)	1819, 2197, 2236, 2612
Bse118I	RCCGGY	2 cut(s)	12, 1812
Bse1I	ACTGG	2 cut(s)	1826, 2178
Bse3DI	GCAATG	1 cut(s)	869
BseBI	CCWGG	3 cut(s)	936, 1455, 1557
BseDI	CCNNGG	3 cut(s)	51, 934, 1373
BseLI	CCNNNNNNNGG	4 cut(s)	1819, 2197, 2236, 2612
BseMI	GCAATG	1 cut(s)	869
BseMII	CTCAG	7 cut(s)	128, 437, 787, 1287, 1713, 1932, 2520
BseNI	ACTGG	2 cut(s)	1826, 2178
BseRI	GAGGAG	6 cut(s)	51, 266, 626, 887, 1908, 2018
BseSI	GKGCMC	2 cut(s)	1595, 2379
BseXI	GCAGC	8 cut(s)	224, 406, 1781, 2005, 2116, 2119, 2330, 2377
BseYI	CCCAGC	1 cut(s)	2769
Bsh1236I	CGCG	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	1615
BshFI	GGCC	5 cut(s)	1023, 1248, 2504, 2545, 2626
BshTI	ACCGGT	1 cut(s)	12
BsiEI	CGRYCG	1 cut(s)	1615
BsiHKAI	GWGCWC	6 cut(s)	69, 100, 186, 249, 2069, 2379
BsiHKCI	CYCGRG	3 cut(s)	248, 2641, 2789
BsiSI	CCGG	5 cut(s)	13, 101, 1024, 1813, 2500
BslFI	GGGAC	3 cut(s)	917, 1235, 2588
BslI	CCNNNNNNNGG	4 cut(s)	1819, 2197, 2236, 2612
BsmAI	GTCTC	5 cut(s)	518, 1132, 1236, 1937, 2147
BsmBI	CGTCTC	1 cut(s)	1236
BsmFI	GGGAC	3 cut(s)	917, 1235, 2588
BsmI	GAATGC	2 cut(s)	214, 2488
BsnI	GGCC	5 cut(s)	1023, 1248, 2504, 2545, 2626
Bso31I	GGTCTC	1 cut(s)	2147
BsoBI	CYCGRG	3 cut(s)	248, 2641, 2789
Bsp119I	TTCGAA	2 cut(s)	1156, 2427
Bsp1286I	GDGCHC	8 cut(s)	69, 100, 186, 249, 1595, 2069, 2379, 2769
Bsp1407I	TGTACA	1 cut(s)	1487
Bsp19I	CCATGG	1 cut(s)	1373
BspANI	GGCC	5 cut(s)	1023, 1248, 2504, 2545, 2626
BspCNI	CTCAG	7 cut(s)	129, 436, 786, 1288, 1714, 1933, 2519
BspFNI	CGCG	1 cut(s)	78
BspHI	TCATGA	1 cut(s)	1948
BspLI	GGNNCC	5 cut(s)	933, 1077, 1449, 1824, 1897
BspMAI	CTGCAG	2 cut(s)	523, 1771
BspOI	GCTAGC	1 cut(s)	1688
BspPI	GGATC	7 cut(s)	457, 1075, 1817, 1830, 1946, 2201, 2574
BspQI	GCTCTTC	1 cut(s)	1500
BspT104I	TTCGAA	2 cut(s)	1156, 2427
BspTI	CTTAAG	1 cut(s)	2795
BspTNI	GGTCTC	1 cut(s)	2147
BsrDI	GCAATG	1 cut(s)	869
BsrFI	RCCGGY	2 cut(s)	12, 1812
BsrGI	TGTACA	1 cut(s)	1487
BsrI	ACTGG	2 cut(s)	1826, 2178
BssAI	RCCGGY	2 cut(s)	12, 1812
BssECI	CCNNGG	3 cut(s)	51, 934, 1373
BssNAI	GTATAC	2 cut(s)	2331, 2405
BssNI	GRCGYC	1 cut(s)	2080
BssSI	CACGAG	1 cut(s)	2097
BssT1I	CCWWGG	2 cut(s)	51, 1373
Bst1107I	GTATAC	2 cut(s)	2331, 2405
Bst2BI	CACGAG	1 cut(s)	2097
Bst2UI	CCWGG	3 cut(s)	936, 1455, 1557
Bst4CI	ACNGT	9 cut(s)	92, 157, 529, 1204, 1226, 1487, 2422, 2726, 2740
Bst6I	CTCTTC	3 cut(s)	501, 894, 1500
BstACI	GRCGYC	1 cut(s)	2080
BstAFI	CTTAAG	1 cut(s)	2795
BstAPI	GCANNNNNTGC	2 cut(s)	758, 2383
BstAUI	TGTACA	1 cut(s)	1487
BstBAI	YACGTR	3 cut(s)	1433, 1982, 2123
BstBI	TTCGAA	2 cut(s)	1156, 2427
BstDSI	CCRYGG	1 cut(s)	1373
BstEII	GGTNACC	1 cut(s)	1559
BstFNI	CGCG	1 cut(s)	78
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	143
BstMAI	GTCTC	5 cut(s)	518, 1132, 1236, 1937, 2147
BstMCI	CGRYCG	1 cut(s)	1615
BstNI	CCWGG	3 cut(s)	936, 1455, 1557
BstNSI	RCATGY	2 cut(s)	1359, 1630
BstPI	GGTNACC	1 cut(s)	1559
BstSCI	CCNGG	4 cut(s)	934, 1453, 1555, 2499
BstSFI	CTRYAG	6 cut(s)	301, 519, 888, 1767, 1833, 2272
BstSLI	GKGCMC	2 cut(s)	1595, 2379
BstSNI	TACGTA	1 cut(s)	2123
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	8 cut(s)	224, 406, 1781, 2005, 2116, 2119, 2330, 2377
BstX2I	RGATCY	2 cut(s)	1822, 2579
BstXI	CCANNNNNNTGG	1 cut(s)	1374
BstYI	RGATCY	2 cut(s)	1822, 2579
BstZ17I	GTATAC	2 cut(s)	2331, 2405
BsuI	GTATCC	1 cut(s)	346
BsuRI	GGCC	5 cut(s)	1023, 1248, 2504, 2545, 2626
BtgI	CCRYGG	1 cut(s)	1373
BtrI	CACGTC	2 cut(s)	226, 800
BtsI	GCAGTG	2 cut(s)	946, 1367
CaiI	CAGNNNCTG	3 cut(s)	850, 2036, 2132
CciI	TCATGA	1 cut(s)	1948
CfoI	GCGC	1 cut(s)	143
Cfr10I	RCCGGY	2 cut(s)	12, 1812
Cfr13I	GGNCC	5 cut(s)	931, 1377, 1447, 2502, 2624
CseI	GACGC	2 cut(s)	1626, 2069
Csp6I	GTAC	7 cut(s)	706, 1256, 1488, 1550, 1972, 2124, 2632
CspAI	ACCGGT	1 cut(s)	12
CviQI	GTAC	7 cut(s)	706, 1256, 1488, 1550, 1972, 2124, 2632
DraI	TTTAAA	1 cut(s)	2466
DrdI	GACNNNNNNGTC	1 cut(s)	532
DriI	GACNNNNNGTC	1 cut(s)	1228
DseDI	GACNNNNNNGTC	1 cut(s)	532
EaeI	YGGCCR	3 cut(s)	1021, 1246, 2543
Eam1104I	CTCTTC	3 cut(s)	501, 894, 1500
Eam1105I	GACNNNNNGTC	1 cut(s)	1228
EarI	CTCTTC	3 cut(s)	501, 894, 1500
Ecl136II	GAGCTC	1 cut(s)	98
Eco105I	TACGTA	1 cut(s)	2123
Eco130I	CCWWGG	2 cut(s)	51, 1373
Eco24I	GRGCYC	2 cut(s)	100, 2769
Eco31I	GGTCTC	1 cut(s)	2147
Eco47I	GGWCC	3 cut(s)	931, 1377, 1447
Eco53kI	GAGCTC	1 cut(s)	98
Eco57I	CTGAAG	3 cut(s)	639, 1410, 1737
Eco88I	CYCGRG	3 cut(s)	248, 2641, 2789
Eco91I	GGTNACC	1 cut(s)	1559
EcoICRI	GAGCTC	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	2624
EcoO65I	GGTNACC	1 cut(s)	1559
EcoRI	GAATTC	2 cut(s)	1158, 2745
EcoRII	CCWGG	3 cut(s)	934, 1453, 1555
EcoT14I	CCWWGG	2 cut(s)	51, 1373
EcoT22I	ATGCAT	1 cut(s)	2252
EcoT38I	GRGCYC	2 cut(s)	100, 2769
ErhI	CCWWGG	2 cut(s)	51, 1373
Esp3I	CGTCTC	1 cut(s)	1236
FalI	AAGNNNNNCTT	4 cut(s)	705, 737, 1579, 1611
FaqI	GGGAC	3 cut(s)	917, 1235, 2588
FauNDI	CATATG	2 cut(s)	358, 754
FbaI	TGATCA	1 cut(s)	603
FblI	GTMKAC	3 cut(s)	1602, 2330, 2404
FokI	GGATG	9 cut(s)	149, 570, 917, 1470, 1813, 1817, 2070, 2165, 2720
FriOI	GRGCYC	2 cut(s)	100, 2769
FspBI	CTAG	6 cut(s)	957, 1175, 1352, 1685, 1737, 2244
GlaI	GCGC	1 cut(s)	142
GsaI	CCCAGC	1 cut(s)	2773
GsuI	CTGGAG	3 cut(s)	1008, 2277, 2717
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	5 cut(s)	1023, 1248, 2504, 2545, 2626
HapII	CCGG	5 cut(s)	13, 101, 1024, 1813, 2500
HgaI	GACGC	2 cut(s)	1626, 2069
HhaI	GCGC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	2080
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HincII	GTYRAC	1 cut(s)	1818
HindII	GTYRAC	1 cut(s)	1818
HindIII	AAGCTT	2 cut(s)	2222, 2411
HinfI	GANTC	9 cut(s)	409, 533, 980, 1144, 1153, 1214, 1945, 2044, 2180
HpaII	CCGG	5 cut(s)	13, 101, 1024, 1813, 2500
HphI	GGTGA	7 cut(s)	40, 739, 839, 1289, 2213, 2278, 2752
Hpy166II	GTNNAC	9 cut(s)	280, 730, 1447, 1603, 1818, 2331, 2377, 2405, 2632
Hpy188I	TCNGA	9 cut(s)	62, 676, 1390, 1644, 1667, 1717, 2094, 2526, 2652
Hpy188III	TCNNGA	9 cut(s)	259, 694, 1306, 1568, 1633, 1878, 1949, 2294, 2734
Hpy8I	GTNNAC	9 cut(s)	280, 730, 1447, 1603, 1818, 2331, 2377, 2405, 2632
Hpy99I	CGWCG	3 cut(s)	83, 227, 1620
HpyAV	CCTTC	5 cut(s)	490, 911, 2070, 2615, 2647
HpyCH4III	ACNGT	9 cut(s)	92, 157, 529, 1204, 1226, 1487, 2422, 2726, 2740
HpyCH4IV	ACGT	7 cut(s)	225, 799, 1432, 1782, 1882, 1981, 2122
HpySE526I	ACGT	7 cut(s)	225, 799, 1432, 1782, 1882, 1981, 2122
Hsp92I	GRCGYC	1 cut(s)	2080
HspAI	GCGC	1 cut(s)	141
Ksp22I	TGATCA	1 cut(s)	603
LguI	GCTCTTC	1 cut(s)	1500
LmnI	GCTCC	7 cut(s)	95, 103, 859, 1075, 1635, 1668, 1895
Lsp1109I	GCAGC	8 cut(s)	224, 406, 1781, 2005, 2116, 2119, 2330, 2377
MaeI	CTAG	6 cut(s)	957, 1175, 1352, 1685, 1737, 2244
MaeII	ACGT	7 cut(s)	225, 799, 1432, 1782, 1882, 1981, 2122
MaeIII	GTNAC	6 cut(s)	361, 1537, 1559, 1828, 2118, 2201
MflI	RGATCY	2 cut(s)	1822, 2579
MhlI	GDGCHC	8 cut(s)	69, 100, 186, 249, 1595, 2069, 2379, 2769
MlsI	TGGCCA	1 cut(s)	1248
MluNI	TGGCCA	1 cut(s)	1248
MlyI	GAGTC	2 cut(s)	542, 1939
MmeI	TCCRAC	5 cut(s)	1012, 1053, 2117, 2441, 2784
Mox20I	TGGCCA	1 cut(s)	1248
Mph1103I	ATGCAT	1 cut(s)	2252
MroXI	GAANNNNTTC	3 cut(s)	921, 2043, 2301
MscI	TGGCCA	1 cut(s)	1248
MseI	TTAA	9 cut(s)	219, 470, 626, 1758, 1901, 2049, 2217, 2465, 2796
MslI	CAYNNNNRTG	5 cut(s)	176, 368, 1372, 1625, 2481
Msp20I	TGGCCA	1 cut(s)	1248
MspA1I	CMGCKG	1 cut(s)	2129
MspCI	CTTAAG	1 cut(s)	2795
MspI	CCGG	5 cut(s)	13, 101, 1024, 1813, 2500
MspR9I	CCNGG	4 cut(s)	936, 1455, 1557, 2501
Mva1269I	GAATGC	2 cut(s)	214, 2488
MvaI	CCWGG	3 cut(s)	936, 1455, 1557
MvnI	CGCG	1 cut(s)	78
NciI	CCSGG	1 cut(s)	2501
NcoI	CCATGG	1 cut(s)	1373
NdeI	CATATG	2 cut(s)	358, 754
NheI	GCTAGC	1 cut(s)	1684
NlaIV	GGNNCC	5 cut(s)	933, 1077, 1449, 1824, 1897
NmeAIII	GCCGAG	1 cut(s)	682
NmuCI	GTSAC	2 cut(s)	361, 2201
NsiI	ATGCAT	1 cut(s)	2252
NspI	RCATGY	2 cut(s)	1359, 1630
NspV	TTCGAA	2 cut(s)	1156, 2427
OliI	CACNNNNGTG	1 cut(s)	176
PaeI	GCATGC	1 cut(s)	1359
PaeR7I	CTCGAG	2 cut(s)	248, 2789
PagI	TCATGA	1 cut(s)	1948
PciSI	GCTCTTC	1 cut(s)	1500
PcsI	WCGNNNNNNNCGW	1 cut(s)	1076
PctI	GAATGC	2 cut(s)	214, 2488
PdmI	GAANNNNTTC	3 cut(s)	921, 2043, 2301
PfeI	GAWTC	7 cut(s)	409, 980, 1144, 1153, 1214, 2044, 2180
PflMI	CCANNNNNTGG	1 cut(s)	2197
PfoI	TCCNGGA	1 cut(s)	1453
PinAI	ACCGGT	1 cut(s)	12
Ple19I	CGATCG	1 cut(s)	1615
PleI	GAGTC	2 cut(s)	541, 1939
PpsI	GAGTC	2 cut(s)	541, 1939
Ppu21I	YACGTR	3 cut(s)	1433, 1982, 2123
PsiI	TTATAA	1 cut(s)	1040
Psp124BI	GAGCTC	1 cut(s)	100
Psp6I	CCWGG	3 cut(s)	934, 1453, 1555
PspEI	GGTNACC	1 cut(s)	1559
PspFI	CCCAGC	1 cut(s)	2769
PspGI	CCWGG	3 cut(s)	934, 1453, 1555
PspN4I	GGNNCC	5 cut(s)	933, 1077, 1449, 1824, 1897
PspPI	GGNCC	5 cut(s)	931, 1377, 1447, 2502, 2624
PspXI	VCTCGAGB	2 cut(s)	248, 2789
PsrI	GAACNNNNNNTAC	3 cut(s)	34, 2103, 2135
PstI	CTGCAG	2 cut(s)	523, 1771
PstNI	CAGNNNCTG	3 cut(s)	850, 2036, 2132
PsuI	RGATCY	2 cut(s)	1822, 2579
PvuI	CGATCG	1 cut(s)	1615
PvuII	CAGCTG	1 cut(s)	2129
RsaI	GTAC	7 cut(s)	707, 1257, 1489, 1551, 1973, 2125, 2633
RsaNI	GTAC	7 cut(s)	706, 1256, 1488, 1550, 1972, 2124, 2632
RseI	CAYNNNNRTG	5 cut(s)	176, 368, 1372, 1625, 2481
SacI	GAGCTC	1 cut(s)	100
SapI	GCTCTTC	1 cut(s)	1500
SaqAI	TTAA	9 cut(s)	219, 470, 626, 1758, 1901, 2049, 2217, 2465, 2796
Sau96I	GGNCC	5 cut(s)	931, 1377, 1447, 2502, 2624
SchI	GAGTC	2 cut(s)	542, 1939
ScrFI	CCNGG	4 cut(s)	936, 1455, 1557, 2501
SduI	GDGCHC	8 cut(s)	69, 100, 186, 249, 1595, 2069, 2379, 2769
SfcI	CTRYAG	6 cut(s)	301, 519, 888, 1767, 1833, 2272
Sfr274I	CTCGAG	2 cut(s)	248, 2789
SfuI	TTCGAA	2 cut(s)	1156, 2427
SinI	GGWCC	3 cut(s)	931, 1377, 1447
SlaI	CTCGAG	2 cut(s)	248, 2789
SmiMI	CAYNNNNRTG	5 cut(s)	176, 368, 1372, 1625, 2481
SmlI	CTYRAG	5 cut(s)	248, 1344, 1791, 2789, 2795
SmoI	CTYRAG	5 cut(s)	248, 1344, 1791, 2789, 2795
SnaBI	TACGTA	1 cut(s)	2123
SphI	GCATGC	1 cut(s)	1359
SspMI	CTAG	6 cut(s)	957, 1175, 1352, 1685, 1737, 2244
SstI	GAGCTC	1 cut(s)	100
StyD4I	CCNGG	4 cut(s)	934, 1453, 1555, 2499
StyI	CCWWGG	2 cut(s)	51, 1373
TaaI	ACNGT	9 cut(s)	92, 157, 529, 1204, 1226, 1487, 2422, 2726, 2740
TaiI	ACGT	7 cut(s)	228, 802, 1435, 1785, 1885, 1984, 2125
TaqII	GACCGA	1 cut(s)	1588
TatI	WGTACW	3 cut(s)	1487, 1549, 2631
TauI	GCSGC	5 cut(s)	125, 146, 149, 856, 1366
TfiI	GAWTC	7 cut(s)	409, 980, 1144, 1153, 1214, 2044, 2180
Tru1I	TTAA	9 cut(s)	219, 470, 626, 1758, 1901, 2049, 2217, 2465, 2796
Tru9I	TTAA	9 cut(s)	219, 470, 626, 1758, 1901, 2049, 2217, 2465, 2796
TseFI	GTSAC	2 cut(s)	361, 2201
TseI	GCWGC	8 cut(s)	212, 419, 1769, 2018, 2129, 2132, 2318, 2390
Tsp45I	GTSAC	2 cut(s)	361, 2201
TspDTI	ATGAA	9 cut(s)	795, 824, 912, 914, 1865, 2148, 2294, 2709, 2738
TspGWI	ACGGA	7 cut(s)	265, 1230, 1369, 1835, 2219, 2564, 2570
Van91I	CCANNNNNTGG	1 cut(s)	2197
Vha464I	CTTAAG	1 cut(s)	2795
VneI	GTGCAC	1 cut(s)	2375
VpaK11BI	GGWCC	3 cut(s)	931, 1377, 1447
XapI	RAATTY	5 cut(s)	1158, 1543, 1925, 2461, 2745
XceI	RCATGY	2 cut(s)	1359, 1630
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XhoI	CTCGAG	2 cut(s)	248, 2789
XmiI	GTMKAC	3 cut(s)	1602, 2330, 2404
XmnI	GAANNNNTTC	3 cut(s)	921, 2043, 2301
XspI	CTAG	6 cut(s)	957, 1175, 1352, 1685, 1737, 2244
Zsp2I	ATGCAT	1 cut(s)	2252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.