Belongs to the RNR ribonuclease family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G17510 AT2G17510 |
| fragaria_vesca | FvH4_1g10170 FvH4_1g10170 |
| malus_domestica | MD02G1113900.v1.1 MD15G1229000.v1.1 |
| prunus_persica | Prupe.7G185100_v2.0.a1 |
| pyrus_communis | pycom02g08870 pycom15g20420 |
| rosa_chinensis | RchiOBHm_Chr2g0096961 |
| rosa_laevigata | RLG00000016687 |
| rosa_multiflora | Rmu_sc0001651.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00145120 |
| rosa_rugosa | Rorug02G0062300 |
| rosa_samantha | Rh2AG110300 Rh2BG112100 |
| rosa_wichuraiana | Rw2G008530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 470, 788, 1037 |
| Acc36I | ACCTGC | 2 cut(s) | 582, 1082 |
| AccB1I | GGYRCC | 1 cut(s) | 2076 |
| AccBSI | CCGCTC | 1 cut(s) | 375 |
| AccI | GTMKAC | 3 cut(s) | 556, 1599, 2628 |
| AciI | CCGC | 6 cut(s) | 93, 375, 1042, 1205, 2274, 2658 |
| AcoI | YGGCCR | 3 cut(s) | 1018, 1243, 2540 |
| AcsI | RAATTY | 6 cut(s) | 268, 320, 513, 1399, 1540, 2003 |
| AcuI | CTGAAG | 4 cut(s) | 1407, 1734, 1935, 2515 |
| AcyI | GRCGYC | 1 cut(s) | 2077 |
| AfaI | GTAC | 7 cut(s) | 802, 1254, 1486, 1548, 1739, 1970, 2122 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 2609 |
| AgsI | TTSAA | 9 cut(s) | 251, 506, 620, 749, 1610, 1784, 1928, 2215, 2618 |
| AjnI | CCWGG | 4 cut(s) | 126, 931, 973, 1450 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 741, 773 |
| Alw21I | GWGCWC | 5 cut(s) | 69, 100, 298, 2376, 2514 |
| Alw26I | GTCTC | 5 cut(s) | 622, 1233, 1934, 2144, 2158 |
| Alw44I | GTGCAC | 1 cut(s) | 2372 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 980, 2129, 2198 |
| AoxI | GGCC | 6 cut(s) | 1018, 1243, 2499, 2540, 2621, 2777 |
| ApaLI | GTGCAC | 1 cut(s) | 2372 |
| ApoI | RAATTY | 6 cut(s) | 268, 320, 513, 1399, 1540, 2003 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 918, 2298 |
| AspLEI | GCGC | 1 cut(s) | 2079 |
| AspS9I | GGNCC | 3 cut(s) | 1444, 2499, 2621 |
| AsuC2I | CCSGG | 3 cut(s) | 457, 2437, 2498 |
| AsuHPI | GGTGA | 4 cut(s) | 40, 788, 1286, 2657 |
| AsuII | TTCGAA | 1 cut(s) | 1153 |
| AsuNHI | GCTAGC | 1 cut(s) | 1681 |
| AvaII | GGWCC | 1 cut(s) | 1444 |
| AxyI | CCTNAGG | 1 cut(s) | 855 |
| BaeGI | GKGCMC | 3 cut(s) | 1592, 2376, 2604 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 162, 195, 345, 378 |
| BalI | TGGCCA | 1 cut(s) | 1245 |
| BamHI | GGATCC | 1 cut(s) | 1819 |
| BanI | GGYRCC | 1 cut(s) | 2076 |
| BanII | GRGCYC | 5 cut(s) | 100, 143, 298, 2514, 2766 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1644, 1676 |
| BbsI | GAAGAC | 1 cut(s) | 1374 |
| Bbv12I | GWGCWC | 5 cut(s) | 69, 100, 298, 2376, 2514 |
| BceAI | ACGGC | 4 cut(s) | 993, 1005, 1628, 2555 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1066, 1100, 2083, 2117 |
| BciT130I | CCWGG | 4 cut(s) | 128, 933, 975, 1452 |
| BciVI | GTATCC | 2 cut(s) | 346, 2394 |
| BcnI | CCSGG | 3 cut(s) | 457, 2437, 2498 |
| BcoDI | GTCTC | 5 cut(s) | 622, 1233, 1934, 2144, 2158 |
| BfaI | CTAG | 8 cut(s) | 884, 890, 1604, 1682, 2241, 2271, 2445, 2798 |
| BfmI | CTRYAG | 7 cut(s) | 301, 519, 960, 1089, 1830, 2190, 2729 |
| BfoI | RGCGCY | 1 cut(s) | 2080 |
| BfuAI | ACCTGC | 2 cut(s) | 582, 1082 |
| BfuI | GTATCC | 2 cut(s) | 346, 2394 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 2489, 2776 |
| Bme1390I | CCNGG | 7 cut(s) | 128, 457, 933, 975, 1452, 2437, 2498 |
| Bme18I | GGWCC | 1 cut(s) | 1444 |
| BmgT120I | GGNCC | 3 cut(s) | 1444, 2499, 2621 |
| BmiI | GGNNCC | 8 cut(s) | 930, 1074, 1446, 1821, 1894, 2078, 2434, 2763 |
| BmrFI | CCNGG | 7 cut(s) | 128, 457, 933, 975, 1452, 2437, 2498 |
| BmsI | GCATC | 9 cut(s) | 599, 703, 937, 1445, 1462, 1916, 2091, 2234, 2399 |
| BmtI | GCTAGC | 1 cut(s) | 1685 |
| BpiI | GAAGAC | 1 cut(s) | 1374 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 986, 1018 |
| BpmI | CTGGAG | 3 cut(s) | 1005, 2274, 2771 |
| Bpu14I | TTCGAA | 1 cut(s) | 1153 |
| BpuEI | CTTGAG | 7 cut(s) | 157, 224, 988, 1193, 1326, 1773, 2126 |
| BpuMI | CCSGG | 3 cut(s) | 457, 2437, 2498 |
| BsaBI | GATNNNNATC | 2 cut(s) | 788, 921 |
| BsaHI | GRCGYC | 1 cut(s) | 2077 |
| BsaI | GGTCTC | 2 cut(s) | 622, 2144 |
| BsaJI | CCNNGG | 4 cut(s) | 51, 126, 953, 1370 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 2609 |
| Bse1I | ACTGG | 1 cut(s) | 2175 |
| Bse21I | CCTNAGG | 1 cut(s) | 855 |
| Bse3DI | GCAATG | 3 cut(s) | 1475, 1487, 2448 |
| Bse8I | GATNNNNATC | 2 cut(s) | 788, 921 |
| BseBI | CCWGG | 4 cut(s) | 128, 933, 975, 1452 |
| BseDI | CCNNGG | 4 cut(s) | 51, 126, 953, 1370 |
| BseGI | GGATG | 8 cut(s) | 122, 910, 1460, 1803, 1807, 2080, 2155, 2710 |
| BseJI | GATNNNNATC | 2 cut(s) | 788, 921 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 2609 |
| BseMI | GCAATG | 3 cut(s) | 1475, 1487, 2448 |
| BseMII | CTCAG | 7 cut(s) | 88, 666, 869, 1284, 1710, 2296, 2517 |
| BseNI | ACTGG | 1 cut(s) | 2175 |
| BseRI | GAGGAG | 4 cut(s) | 51, 887, 1551, 1905 |
| BseSI | GKGCMC | 3 cut(s) | 1592, 2376, 2604 |
| BseYI | CCCAGC | 2 cut(s) | 211, 2766 |
| BsgI | GTGCAG | 2 cut(s) | 602, 1785 |
| BshFI | GGCC | 6 cut(s) | 1020, 1245, 2501, 2542, 2623, 2779 |
| BshNI | GGYRCC | 1 cut(s) | 2076 |
| BsiHKAI | GWGCWC | 5 cut(s) | 69, 100, 298, 2376, 2514 |
| BsiSI | CCGG | 3 cut(s) | 457, 2437, 2497 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 2609 |
| BsmAI | GTCTC | 5 cut(s) | 622, 1233, 1934, 2144, 2158 |
| BsmI | GAATGC | 2 cut(s) | 1051, 1855 |
| BsnI | GGCC | 6 cut(s) | 1020, 1245, 2501, 2542, 2623, 2779 |
| Bso31I | GGTCTC | 2 cut(s) | 622, 2144 |
| Bsp119I | TTCGAA | 1 cut(s) | 1153 |
| Bsp1286I | GDGCHC | 9 cut(s) | 69, 100, 143, 298, 1592, 2376, 2514, 2604, 2766 |
| Bsp1407I | TGTACA | 2 cut(s) | 1484, 1546 |
| Bsp19I | CCATGG | 1 cut(s) | 1370 |
| BspACI | CCGC | 6 cut(s) | 93, 375, 1042, 1205, 2274, 2658 |
| BspANI | GGCC | 6 cut(s) | 1020, 1245, 2501, 2542, 2623, 2779 |
| BspCNI | CTCAG | 7 cut(s) | 87, 667, 868, 1285, 1711, 2295, 2516 |
| BspHI | TCATGA | 1 cut(s) | 1945 |
| BspLI | GGNNCC | 8 cut(s) | 930, 1074, 1446, 1821, 1894, 2078, 2434, 2763 |
| BspMAI | CTGCAG | 5 cut(s) | 305, 523, 1093, 2194, 2733 |
| BspMI | ACCTGC | 2 cut(s) | 582, 1082 |
| BspOI | GCTAGC | 1 cut(s) | 1685 |
| BspT104I | TTCGAA | 1 cut(s) | 1153 |
| BspT107I | GGYRCC | 1 cut(s) | 2076 |
| BspTNI | GGTCTC | 2 cut(s) | 622, 2144 |
| BsrBI | CCGCTC | 1 cut(s) | 375 |
| BsrDI | GCAATG | 3 cut(s) | 1475, 1487, 2448 |
| BsrGI | TGTACA | 2 cut(s) | 1484, 1546 |
| BsrI | ACTGG | 1 cut(s) | 2175 |
| BssECI | CCNNGG | 4 cut(s) | 51, 126, 953, 1370 |
| BssNI | GRCGYC | 1 cut(s) | 2077 |
| BssT1I | CCWWGG | 3 cut(s) | 51, 953, 1370 |
| Bst2UI | CCWGG | 4 cut(s) | 128, 933, 975, 1452 |
| Bst4CI | ACNGT | 4 cut(s) | 529, 1365, 2723, 2737 |
| Bst6I | CTCTTC | 5 cut(s) | 246, 501, 894, 1497, 1665 |
| BstACI | GRCGYC | 1 cut(s) | 2077 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 114, 2380 |
| BstAUI | TGTACA | 2 cut(s) | 1484, 1546 |
| BstBI | TTCGAA | 1 cut(s) | 1153 |
| BstDEI | CTNAG | 9 cut(s) | 74, 675, 722, 855, 1146, 1293, 1719, 2282, 2503 |
| BstDSI | CCRYGG | 1 cut(s) | 1370 |
| BstF5I | GGATG | 8 cut(s) | 122, 910, 1460, 1803, 1807, 2080, 2155, 2710 |
| BstH2I | RGCGCY | 1 cut(s) | 2080 |
| BstHHI | GCGC | 1 cut(s) | 2079 |
| BstMAI | GTCTC | 5 cut(s) | 622, 1233, 1934, 2144, 2158 |
| BstNI | CCWGG | 4 cut(s) | 128, 933, 975, 1452 |
| BstNSI | RCATGY | 3 cut(s) | 1356, 1627, 2716 |
| BstSCI | CCNGG | 7 cut(s) | 126, 455, 931, 973, 1450, 2435, 2496 |
| BstSFI | CTRYAG | 7 cut(s) | 301, 519, 960, 1089, 1830, 2190, 2729 |
| BstSLI | GKGCMC | 3 cut(s) | 1592, 2376, 2604 |
| BstV2I | GAAGAC | 1 cut(s) | 1374 |
| BstX2I | RGATCY | 5 cut(s) | 1064, 1819, 2040, 2278, 2576 |
| BstYI | RGATCY | 5 cut(s) | 1064, 1819, 2040, 2278, 2576 |
| Bsu36I | CCTNAGG | 1 cut(s) | 855 |
| BsuI | GTATCC | 2 cut(s) | 346, 2394 |
| BsuRI | GGCC | 6 cut(s) | 1020, 1245, 2501, 2542, 2623, 2779 |
| BtgI | CCRYGG | 1 cut(s) | 1370 |
| BtsCI | GGATG | 8 cut(s) | 122, 910, 1460, 1803, 1807, 2080, 2155, 2710 |
| BtsI | GCAGTG | 1 cut(s) | 2199 |
| BtsIMutI | CAGTG | 5 cut(s) | 534, 2168, 2199, 2511, 2728 |
| BveI | ACCTGC | 2 cut(s) | 582, 1082 |
| CaiI | CAGNNNCTG | 3 cut(s) | 980, 2129, 2198 |
| CciI | TCATGA | 1 cut(s) | 1945 |
| CfoI | GCGC | 1 cut(s) | 2079 |
| Cfr13I | GGNCC | 3 cut(s) | 1444, 2499, 2621 |
| CsiI | ACCWGGT | 1 cut(s) | 973 |
| Csp6I | GTAC | 7 cut(s) | 801, 1253, 1485, 1547, 1738, 1969, 2121 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 396, 431 |
| CviQI | GTAC | 7 cut(s) | 801, 1253, 1485, 1547, 1738, 1969, 2121 |
| DdeI | CTNAG | 9 cut(s) | 74, 675, 722, 855, 1146, 1293, 1719, 2282, 2503 |
| DinI | GGCGCC | 1 cut(s) | 2078 |
| DraI | TTTAAA | 1 cut(s) | 2463 |
| EaeI | YGGCCR | 3 cut(s) | 1018, 1243, 2540 |
| Eam1104I | CTCTTC | 5 cut(s) | 246, 501, 894, 1497, 1665 |
| EarI | CTCTTC | 5 cut(s) | 246, 501, 894, 1497, 1665 |
| EciI | GGCGGA | 1 cut(s) | 2673 |
| Ecl136II | GAGCTC | 3 cut(s) | 98, 296, 2512 |
| Eco130I | CCWWGG | 3 cut(s) | 51, 953, 1370 |
| Eco24I | GRGCYC | 5 cut(s) | 100, 143, 298, 2514, 2766 |
| Eco31I | GGTCTC | 2 cut(s) | 622, 2144 |
| Eco47I | GGWCC | 1 cut(s) | 1444 |
| Eco53kI | GAGCTC | 3 cut(s) | 98, 296, 2512 |
| Eco57I | CTGAAG | 4 cut(s) | 1407, 1734, 1935, 2515 |
| Eco81I | CCTNAGG | 1 cut(s) | 855 |
| EcoICRI | GAGCTC | 3 cut(s) | 98, 296, 2512 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2621 |
| EcoRII | CCWGG | 4 cut(s) | 126, 931, 973, 1450 |
| EcoT14I | CCWWGG | 3 cut(s) | 51, 953, 1370 |
| EcoT22I | ATGCAT | 2 cut(s) | 1477, 2249 |
| EcoT38I | GRGCYC | 5 cut(s) | 100, 143, 298, 2514, 2766 |
| EgeI | GGCGCC | 1 cut(s) | 2078 |
| EheI | GGCGCC | 1 cut(s) | 2078 |
| ErhI | CCWWGG | 3 cut(s) | 51, 953, 1370 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 705, 737, 1576, 1608 |
| FauI | CCCGC | 1 cut(s) | 2267 |
| FauNDI | CATATG | 2 cut(s) | 358, 754 |
| FblI | GTMKAC | 3 cut(s) | 556, 1599, 2628 |
| FokI | GGATG | 8 cut(s) | 109, 917, 1467, 1810, 1814, 2067, 2162, 2717 |
| FriOI | GRGCYC | 5 cut(s) | 100, 143, 298, 2514, 2766 |
| FspBI | CTAG | 8 cut(s) | 884, 890, 1604, 1682, 2241, 2271, 2445, 2798 |
| GlaI | GCGC | 1 cut(s) | 2078 |
| GsaI | CCCAGC | 2 cut(s) | 215, 2770 |
| GsuI | CTGGAG | 3 cut(s) | 1005, 2274, 2771 |
| HaeII | RGCGCY | 1 cut(s) | 2080 |
| HaeIII | GGCC | 6 cut(s) | 1020, 1245, 2501, 2542, 2623, 2779 |
| HapII | CCGG | 3 cut(s) | 457, 2437, 2497 |
| HhaI | GCGC | 1 cut(s) | 2079 |
| Hin1I | GRCGYC | 1 cut(s) | 2077 |
| Hin6I | GCGC | 1 cut(s) | 2077 |
| HinP1I | GCGC | 1 cut(s) | 2077 |
| HincII | GTYRAC | 2 cut(s) | 557, 2674 |
| HindII | GTYRAC | 2 cut(s) | 557, 2674 |
| HindIII | AAGCTT | 1 cut(s) | 2408 |
| HpaII | CCGG | 3 cut(s) | 457, 2437, 2497 |
| HphI | GGTGA | 4 cut(s) | 40, 788, 1286, 2657 |
| Hpy188I | TCNGA | 8 cut(s) | 77, 102, 192, 595, 676, 1387, 1555, 1887 |
| Hpy99I | CGWCG | 1 cut(s) | 224 |
| HpyAV | CCTTC | 5 cut(s) | 28, 159, 1248, 2612, 2648 |
| HpyCH4III | ACNGT | 4 cut(s) | 529, 1365, 2723, 2737 |
| HpyCH4IV | ACGT | 3 cut(s) | 683, 799, 1879 |
| HpyF3I | CTNAG | 9 cut(s) | 74, 675, 722, 855, 1146, 1293, 1719, 2282, 2503 |
| HpySE526I | ACGT | 3 cut(s) | 683, 799, 1879 |
| Hsp92I | GRCGYC | 1 cut(s) | 2077 |
| HspAI | GCGC | 1 cut(s) | 2077 |
| KasI | GGCGCC | 1 cut(s) | 2076 |
| LmnI | GCTCC | 8 cut(s) | 95, 103, 955, 1072, 1892, 2509, 2517, 2761 |
| LweI | GCATC | 9 cut(s) | 599, 703, 937, 1445, 1462, 1916, 2091, 2234, 2399 |
| MabI | ACCWGGT | 1 cut(s) | 973 |
| MaeI | CTAG | 8 cut(s) | 884, 890, 1604, 1682, 2241, 2271, 2445, 2798 |
| MaeII | ACGT | 3 cut(s) | 683, 799, 1879 |
| MaeIII | GTNAC | 5 cut(s) | 361, 734, 988, 1365, 1534 |
| MbiI | CCGCTC | 1 cut(s) | 375 |
| MfeI | CAATTG | 1 cut(s) | 1424 |
| MflI | RGATCY | 5 cut(s) | 1064, 1819, 2040, 2278, 2576 |
| MhlI | GDGCHC | 9 cut(s) | 69, 100, 143, 298, 1592, 2376, 2514, 2604, 2766 |
| MlsI | TGGCCA | 1 cut(s) | 1245 |
| MluNI | TGGCCA | 1 cut(s) | 1245 |
| Mly113I | GGCGCC | 1 cut(s) | 2077 |
| MlyI | GAGTC | 6 cut(s) | 542, 562, 1004, 1527, 1936, 2180 |
| MmeI | TCCRAC | 4 cut(s) | 360, 739, 1495, 2114 |
| Mox20I | TGGCCA | 1 cut(s) | 1245 |
| Mph1103I | ATGCAT | 2 cut(s) | 1477, 2249 |
| MroXI | GAANNNNTTC | 2 cut(s) | 918, 2298 |
| MscI | TGGCCA | 1 cut(s) | 1245 |
| MseI | TTAA | 7 cut(s) | 258, 314, 1826, 1838, 1898, 2046, 2462 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1480, 2478 |
| Msp20I | TGGCCA | 1 cut(s) | 1245 |
| MspA1I | CMGCKG | 1 cut(s) | 2126 |
| MspI | CCGG | 3 cut(s) | 457, 2437, 2497 |
| MspR9I | CCNGG | 7 cut(s) | 128, 457, 933, 975, 1452, 2437, 2498 |
| MunI | CAATTG | 1 cut(s) | 1424 |
| Mva1269I | GAATGC | 2 cut(s) | 1051, 1855 |
| MvaI | CCWGG | 4 cut(s) | 128, 933, 975, 1452 |
| NarI | GGCGCC | 1 cut(s) | 2077 |
| NciI | CCSGG | 3 cut(s) | 457, 2437, 2498 |
| NcoI | CCATGG | 1 cut(s) | 1370 |
| NdeI | CATATG | 2 cut(s) | 358, 754 |
| NheI | GCTAGC | 1 cut(s) | 1681 |
| NlaIV | GGNNCC | 8 cut(s) | 930, 1074, 1446, 1821, 1894, 2078, 2434, 2763 |
| NmeAIII | GCCGAG | 1 cut(s) | 2059 |
| NsiI | ATGCAT | 2 cut(s) | 1477, 2249 |
| NspI | RCATGY | 3 cut(s) | 1356, 1627, 2716 |
| NspV | TTCGAA | 1 cut(s) | 1153 |
| PaeI | GCATGC | 1 cut(s) | 1356 |
| PagI | TCATGA | 1 cut(s) | 1945 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1228 |
| PctI | GAATGC | 2 cut(s) | 1051, 1855 |
| PdmI | GAANNNNTTC | 2 cut(s) | 918, 2298 |
| PfeI | GAWTC | 8 cut(s) | 730, 1141, 1150, 1177, 1211, 1975, 2177, 2224 |
| PfoI | TCCNGGA | 2 cut(s) | 931, 1450 |
| PleI | GAGTC | 6 cut(s) | 541, 561, 1003, 1526, 1936, 2180 |
| PluTI | GGCGCC | 1 cut(s) | 2080 |
| PpsI | GAGTC | 6 cut(s) | 541, 561, 1003, 1526, 1936, 2180 |
| PsiI | TTATAA | 3 cut(s) | 470, 788, 1037 |
| Psp124BI | GAGCTC | 3 cut(s) | 100, 298, 2514 |
| Psp6I | CCWGG | 4 cut(s) | 126, 931, 973, 1450 |
| PspFI | CCCAGC | 2 cut(s) | 211, 2766 |
| PspGI | CCWGG | 4 cut(s) | 126, 931, 973, 1450 |
| PspN4I | GGNNCC | 8 cut(s) | 930, 1074, 1446, 1821, 1894, 2078, 2434, 2763 |
| PspPI | GGNCC | 3 cut(s) | 1444, 2499, 2621 |
| PstI | CTGCAG | 5 cut(s) | 305, 523, 1093, 2194, 2733 |
| PstNI | CAGNNNCTG | 3 cut(s) | 980, 2129, 2198 |
| PsuI | RGATCY | 5 cut(s) | 1064, 1819, 2040, 2278, 2576 |
| PvuII | CAGCTG | 1 cut(s) | 2126 |
| RsaI | GTAC | 7 cut(s) | 802, 1254, 1486, 1548, 1739, 1970, 2122 |
| RsaNI | GTAC | 7 cut(s) | 801, 1253, 1485, 1547, 1738, 1969, 2121 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1480, 2478 |
| SacI | GAGCTC | 3 cut(s) | 100, 298, 2514 |
| SalI | GTCGAC | 1 cut(s) | 555 |
| SaqAI | TTAA | 7 cut(s) | 258, 314, 1826, 1838, 1898, 2046, 2462 |
| Sau96I | GGNCC | 3 cut(s) | 1444, 2499, 2621 |
| SbfI | CCTGCAGG | 1 cut(s) | 1093 |
| SchI | GAGTC | 6 cut(s) | 542, 562, 1004, 1527, 1936, 2180 |
| ScrFI | CCNGG | 7 cut(s) | 128, 457, 933, 975, 1452, 2437, 2498 |
| SdaI | CCTGCAGG | 1 cut(s) | 1093 |
| SduI | GDGCHC | 9 cut(s) | 69, 100, 143, 298, 1592, 2376, 2514, 2604, 2766 |
| SexAI | ACCWGGT | 1 cut(s) | 973 |
| SfaNI | GCATC | 9 cut(s) | 599, 703, 937, 1445, 1462, 1916, 2091, 2234, 2399 |
| SfcI | CTRYAG | 7 cut(s) | 301, 519, 960, 1089, 1830, 2190, 2729 |
| SfoI | GGCGCC | 1 cut(s) | 2078 |
| SfuI | TTCGAA | 1 cut(s) | 1153 |
| SinI | GGWCC | 1 cut(s) | 1444 |
| SmiI | ATTTAAAT | 1 cut(s) | 2463 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1480, 2478 |
| SmlI | CTYRAG | 7 cut(s) | 136, 203, 1003, 1172, 1341, 1788, 2105 |
| SmoI | CTYRAG | 7 cut(s) | 136, 203, 1003, 1172, 1341, 1788, 2105 |
| SphI | GCATGC | 1 cut(s) | 1356 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1093 |
| SsiI | CCGC | 6 cut(s) | 93, 375, 1042, 1205, 2274, 2658 |
| SspDI | GGCGCC | 1 cut(s) | 2076 |
| SspMI | CTAG | 8 cut(s) | 884, 890, 1604, 1682, 2241, 2271, 2445, 2798 |
| SstI | GAGCTC | 3 cut(s) | 100, 298, 2514 |
| StyD4I | CCNGG | 7 cut(s) | 126, 455, 931, 973, 1450, 2435, 2496 |
| StyI | CCWWGG | 3 cut(s) | 51, 953, 1370 |
| SwaI | ATTTAAAT | 1 cut(s) | 2463 |
| TaaI | ACNGT | 4 cut(s) | 529, 1365, 2723, 2737 |
| TaiI | ACGT | 3 cut(s) | 686, 802, 1882 |
| TaqI | TCGA | 8 cut(s) | 168, 219, 394, 556, 1127, 1153, 1663, 2470 |
| TaqII | GACCGA | 1 cut(s) | 1585 |
| TatI | WGTACW | 2 cut(s) | 1484, 1546 |
| TfiI | GAWTC | 8 cut(s) | 730, 1141, 1150, 1177, 1211, 1975, 2177, 2224 |
| Tru1I | TTAA | 7 cut(s) | 258, 314, 1826, 1838, 1898, 2046, 2462 |
| Tru9I | TTAA | 7 cut(s) | 258, 314, 1826, 1838, 1898, 2046, 2462 |
| TscAI | CASTG | 5 cut(s) | 534, 2175, 2199, 2511, 2728 |
| TspDTI | ATGAA | 7 cut(s) | 824, 911, 912, 1524, 1862, 2291, 2735 |
| TspGWI | ACGGA | 4 cut(s) | 380, 1658, 2445, 2561 |
| TspRI | CASTG | 5 cut(s) | 534, 2175, 2199, 2511, 2728 |
| VneI | GTGCAC | 1 cut(s) | 2372 |
| VpaK11BI | GGWCC | 1 cut(s) | 1444 |
| XapI | RAATTY | 6 cut(s) | 268, 320, 513, 1399, 1540, 2003 |
| XceI | RCATGY | 3 cut(s) | 1356, 1627, 2716 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1368 |
| XmiI | GTMKAC | 3 cut(s) | 556, 1599, 2628 |
| XmnI | GAANNNNTTC | 2 cut(s) | 918, 2298 |
| XspI | CTAG | 8 cut(s) | 884, 890, 1604, 1682, 2241, 2271, 2445, 2798 |
| Zsp2I | ATGCAT | 2 cut(s) | 1477, 2249 |