Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0014218

Physical Location & Seq

Genomic Coordinates Reverse (-)

8981582 .. 8989086

Gene Structure 7505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016687

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2811 bp

ATGTTGCAGAACCGCTCATACGTCAAGAGAACCAGAGGAGGCAAAATCACCAAGGTCGTCAGAGAGCACTATCTCCGCCACGATATCTACTGCGGAGCTCCGGTATGCAAAGTATGCGACACCTCCCAAGCTCGCCTCAGCGCCACCGCTTCCACCGTTCTCATCCTCGACACCAATGTGGTGCTCAATCAGATTGATTTGATTGAGAATCCGGCGATTGACGACGTGGTTGTGCTTTCGATAGTGCTGGAGGAGGTCAAGAACAGGAACTTGTCCGTTTACAATAGACTTCGAGCTCTATGCAGTAATTCTTTGAGGAAATTCTTTGTTTTCTCTAATGAGCATCACAAGGATACATATGTCACGGACATGAGTGGAGAAAGTAAAAATGATCGAAATGATAGAGCAATTCGGGTGGCTGCTCAATGGTATCAAACTCATTTGGCTGGTTCTGTTCGTATTTTACTTTTAACTAATGACAAAGAGAATAAGAGGAAGGCTCTTGAAGAGGGGATTTCTGCAGAGACAGTGGAGTCGTATGTGAGATCAATGAGTCGACCAGATTTGCTTGATCTGCTTGTGCATCCTGCATCGTCAGAAGATGTAATCATGGAGGAAGTTGAAGATTTAAGACCATCAAAGAAGAAAATTGTTTACTCAGAGCATAAACCCTTGTCAGAGATTACTTCTGGTATCCGGTGCGGTATCTACCATCAAGGAAAACTAAGGGTGAATCGATACAACCCCTTTGAAGCATATGTTGGAAGCCAGAGCCTCAGTGATGAAATAATAATTTATGGACGTGCAAACATGAATAGGGCCTTTGATGGTGATATAGTGGCAGTCCAGCTTCTGCCTCAGGAGCAATGGCATGAGGAGAAATCTCTTGCGATAGCAGATGAAGAGGATGAAGAAGAAGAAGGTGTTCATCTGGTTCCTGGCAGTGCTGATGATGTTCCTAGAACCACAGCTCAACCACAGGATTCTGCTGGAGAAACATGTTCTGTTTCAAGTCGTCCATCTGGCCGTATTGTTGGTATTATAAAGCGGAATTGGCATTCTTATTGTGGATCTTTGGAGCCGATGGCTAAGCCTGCTGGCAGTGGTGGTGTTGCCCATGCCTTATTCGTCTCAAAAGATTGTAGGATTCCTAAGATCCGAATTCAAACTCGACAGCTAGAAAATCTTCTGGACAAGAGAATTATTGTGGCGGTTGATTCTTGGGACTGTTTGTCTCGTTATCCTTCTGGCCATTATGTACGAACCATAGGACAAATCGGTGATAAAGATACTGAAACTGAGGTGGTCTTGATTGAGAATGATATAAATACAAGACCATTTTCTACTCAAGTTCTAGCATGCTTGCCGCCATTGCCATGGTCTGTGTCCTCTGCAGATTTGGCAAATCCTGTTAGGGAGGATTTGCGACAATTACGTGTCTTTAGTGTGGACCCTCCTGGATGCAAGGATATCGACGATGCACTTCATTGTACAGCTCTTCCAAATGGAAATTACGAAGTTGGTGTCCATATTGCTGATGTTACAAATTTTGTACTTCCTGGTACCCCTCTTGATGATGAGGCTTCACAAAGGGGCACATCGGTCTACCTTGTCGATCGACGCATTGACATGCTTCCGAAACCTCTGACAGAAGATATATGTTCACTCCGAGCTGATGTGGAAAGGCTAGCCTTTTCTGTTATTTGGGAAATGACATCAGAAGCTGAGATTATATCTACAAGATACACAAAAAGTGTCATTAAATCTTCTGCAGCATTGTCTTATGTAGAAGCTCAAGCAAGGATGGATGATAGCCGGTTGACGGATCCAGTAACTACAGATTTGAGAAACATGAACACATTAGCAAAGATAATGAGGTCAAGACGTATTGAGAGAGGAGCCTTAACTCTTGCATCTGCTGAAGTCAGATTTCAAATTGACACTGAGACTCATGATCCCCTTGATATTGGTATGTACCAGATACGCGAAGCAAACCAAATGGTTGAGGAGTTTATGCTTGCTGCTAATGTTGCAGTTGCTGAGAAGATTCTTAAACATTATCCTTTGTGCTCACTATTGAGGCGCCATCCTACTCCAACAAGAGAGATGCTTGAACCTTTGTTACGGACAGCTGCTGCTGTTGGTCTCAACTTGGATGTTTCATCATCAAAAGCACTGGCTGATTCACTCGACCATGCTGTGGGTGATGATCCGTACTTTAATAAGCTAATCCGTATATTGGCCACTAGATGCATGACACAGGCCGTTTATTTCTGTAGTGGGGAGCTCAGCCCTCCAGAATATCTTCATTATGGGCTTGCAGCACCTCTGTATACCCATTTTACCTCTCCTATAAGGAGATATGCAGATGTCATAGTGCACCGGTTGCTTGCTGCGTCTCTGGGTATACACAGGCTTCCAACTGTATTCCAAGATGGACCCCAACTCAATAGTATTGCTGAAAATTTAAACTATCGACATAGGAACGCTCAGATGGCAAGCAGGGCCTCAGTGGAACTCCATACTCTGATTTTTTTCAGAACACGGCCAACGGATGCGGAGGCAAGAATTGTGAGGATAAGATCCAATGGATTTTTTGTATTTGTCCCCCAGTTTGGCATAGAAGGGCCTGTGTACTTGACCCCAAGAGGTGAGAAGGGAAGTGGAGAATGGTTTGTAGATGAACAACAGCAGAAGATTAGAAAAATGGATGCCAGCATTTCATACAGCGTTCTGCAGACAGTGAGAATCCATTTGGAGATTGTCGAGCCCCAGCCCAATAGACCGAAACTCGAGCTTAAGCTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000176 GO:0000178 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004527 GO:0004532 GO:0004540 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019439 GO:0019899 GO:0022613 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0051020 GO:0065007 GO:0065009 GO:0070013 GO:0071034 GO:0071043 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0098772 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PIN_4 RNB Rrp44_CSD1 Rrp44_S1

Protein Analysis

937

Amino Acids

105.19

Weight (kDa)

6.1

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIN_4	PF13638	54 - 177	1.9e-20	PIN domain
Rrp44_CSD1	PF17216	220 - 318	4.5e-13	Rrp44-like cold shock domain
OB_HELZ2	PF25049	236 - 293	2.4e-06	3'-5' exoribonuclease HELZ2, OB-fold domain
OB_Dis3	PF17849	374 - 441	5.4e-21	Dis3-like cold-shock domain 2 (CSD2)
RNB	PF00773	472 - 801	2.4e-101	RNB domain
Rrp44_S1	PF17215	853 - 921	2.5e-07	S1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17510 AT2G17510
fragaria_vesca	FvH4_1g10170 FvH4_1g10170
malus_domestica	MD02G1113900.v1.1 MD15G1229000.v1.1
prunus_persica	Prupe.7G185100_v2.0.a1
pyrus_communis	pycom02g08870 pycom15g20420
rosa_chinensis	RchiOBHm_Chr2g0096961
rosa_laevigata	RLG00000016687
rosa_multiflora	Rmu_sc0001651.1_g000008
rosa_roxburghii	Rroxscaffold_2G00145120
rosa_rugosa	Rorug02G0062300
rosa_samantha	Rh2AG110300 Rh2BG112100
rosa_wichuraiana	Rw2G008530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1043
AasI	GACNNNNNNGTC	1 cut(s)	532
Acc65I	GGTACC	1 cut(s)	1562
AccB1I	GGYRCC	2 cut(s)	1562, 2082
AccB7I	CCANNNNNTGG	1 cut(s)	2200
AccBSI	CCGCTC	1 cut(s)	15
AccI	GTMKAC	4 cut(s)	556, 1605, 2333, 2407
AccII	CGCG	1 cut(s)	1986
AciI	CCGC	9 cut(s)	13, 76, 93, 147, 702, 1048, 1211, 1367, 2558
AclWI	GGATC	7 cut(s)	1078, 1150, 1820, 1833, 1949, 2204, 2577
AcoI	YGGCCR	4 cut(s)	1024, 1249, 2241, 2546
AcsI	RAATTY	4 cut(s)	320, 1161, 1546, 2464
AcuI	CTGAAG	1 cut(s)	1941
AcyI	GRCGYC	1 cut(s)	2083
AfaI	GTAC	7 cut(s)	1260, 1492, 1554, 1564, 1976, 2216, 2636
AfiI	CCNNNNNNNGG	4 cut(s)	1822, 2200, 2239, 2615
AflII	CTTAAG	1 cut(s)	2798
AflIII	ACRYGT	2 cut(s)	998, 1435
AgeI	ACCGGT	1 cut(s)	2382
AgsI	TTSAA	7 cut(s)	506, 623, 752, 1011, 1166, 1934, 2114
AhdI	GACNNNNNGTC	1 cut(s)	1231
AjiI	CACGTC	2 cut(s)	226, 803
AjnI	CCWGG	3 cut(s)	937, 1456, 1558
AjuI	GAANNNNNNNTTGG	2 cut(s)	744, 776
AleI	CACNNNNGTG	1 cut(s)	176
Alw21I	GWGCWC	7 cut(s)	69, 100, 186, 298, 2072, 2289, 2382
Alw26I	GTCTC	6 cut(s)	518, 1135, 1239, 1940, 2150, 2403
Alw44I	GTGCAC	1 cut(s)	2378
AlwI	GGATC	7 cut(s)	1078, 1150, 1820, 1833, 1949, 2204, 2577
AlwNI	CAGNNNCTG	4 cut(s)	853, 1724, 2039, 2135
Ama87I	CYCGRG	1 cut(s)	2792
AoxI	GGCC	8 cut(s)	819, 1024, 1249, 2241, 2262, 2505, 2546, 2627
ApaLI	GTGCAC	1 cut(s)	2378
ApeKI	GCWGC	7 cut(s)	419, 1772, 2021, 2132, 2135, 2321, 2393
ApoI	RAATTY	4 cut(s)	320, 1161, 1546, 2464
ArsI	GACNNNNNNTTYG	2 cut(s)	1509, 1541
AsiGI	ACCGGT	1 cut(s)	2382
Asp700I	GAANNNNTTC	3 cut(s)	924, 1185, 2304
Asp718I	GGTACC	1 cut(s)	1562
AspLEI	GCGC	2 cut(s)	143, 2085
AspS9I	GGNCC	5 cut(s)	819, 1450, 2438, 2505, 2627
AsuHPI	GGTGA	6 cut(s)	40, 742, 842, 1292, 2216, 2663
AsuNHI	GCTAGC	1 cut(s)	1687
AvaI	CYCGRG	1 cut(s)	2792
AvaII	GGWCC	2 cut(s)	1450, 2438
AxyI	CCTNAGG	1 cut(s)	858
BaeGI	GKGCMC	2 cut(s)	1598, 2382
BaeI	ACNNNNGTAYC	2 cut(s)	345, 378
BalI	TGGCCA	2 cut(s)	1251, 2243
BamHI	GGATCC	1 cut(s)	1825
BanI	GGYRCC	2 cut(s)	1562, 2082
BanII	GRGCYC	4 cut(s)	100, 298, 2289, 2772
Bbv12I	GWGCWC	7 cut(s)	69, 100, 186, 298, 2072, 2289, 2382
BbvCI	CCTCAGC	1 cut(s)	137
BbvI	GCAGC	7 cut(s)	406, 1784, 2008, 2119, 2122, 2333, 2380
BccI	CCATC	9 cut(s)	643, 720, 821, 1027, 1078, 1798, 2094, 2429, 2488
BceAI	ACGGC	3 cut(s)	1011, 2249, 2561
BcgI	CGANNNNNNTGC	4 cut(s)	282, 316, 1453, 1487
BciT130I	CCWGG	3 cut(s)	939, 1458, 1560
BciVI	GTATCC	2 cut(s)	346, 704
BcoDI	GTCTC	6 cut(s)	518, 1135, 1239, 1940, 2150, 2403
BfaI	CTAG	5 cut(s)	960, 1178, 1355, 1688, 2247
BfmI	CTRYAG	6 cut(s)	519, 1392, 1770, 1836, 2275, 2735
BfoI	RGCGCY	2 cut(s)	144, 2086
BfrI	CTTAAG	1 cut(s)	2798
BfuI	GTATCC	2 cut(s)	346, 704
BisI	GCNGC	8 cut(s)	420, 1367, 1773, 2022, 2133, 2136, 2322, 2394
BlpI	GCTNAGC	2 cut(s)	1089, 2288
BlsI	GCNGC	8 cut(s)	421, 1368, 1774, 2023, 2134, 2137, 2323, 2395
Bme1390I	CCNGG	3 cut(s)	939, 1458, 1560
Bme18I	GGWCC	2 cut(s)	1450, 2438
BmeRI	GACNNNNNGTC	1 cut(s)	1231
BmeT110I	CYCGRG	1 cut(s)	2792
BmgBI	CACGTC	2 cut(s)	226, 803
BmgT120I	GGNCC	5 cut(s)	819, 1450, 2438, 2505, 2627
BmiI	GGNNCC	8 cut(s)	936, 1080, 1452, 1564, 1827, 1900, 2084, 2440
BmrFI	CCNGG	3 cut(s)	939, 1458, 1560
BmrI	ACTGGG	1 cut(s)	2605
BmtI	GCTAGC	1 cut(s)	1691
BmuI	ACTGGG	1 cut(s)	2605
BplI	GAGNNNNNCTC	2 cut(s)	484, 516
BpmI	CTGGAG	3 cut(s)	269, 1011, 2280
Bpu10I	CCTNAGC	1 cut(s)	137
Bpu1102I	GCTNAGC	2 cut(s)	1089, 2288
BpuEI	CTTGAG	2 cut(s)	1332, 1779
Bsa29I	ATCGAT	1 cut(s)	736
BsaAI	YACGTR	1 cut(s)	1436
BsaHI	GRCGYC	1 cut(s)	2083
BsaI	GGTCTC	1 cut(s)	2150
BsaJI	CCNNGG	2 cut(s)	51, 1376
BsaWI	WCCGGW	3 cut(s)	100, 696, 2382
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bsc4I	CCNNNNNNNGG	4 cut(s)	1822, 2200, 2239, 2615
Bse118I	RCCGGY	2 cut(s)	1815, 2382
Bse1I	ACTGG	3 cut(s)	1829, 2181, 2611
Bse21I	CCTNAGG	1 cut(s)	858
Bse3DI	GCAATG	2 cut(s)	872, 1370
BseBI	CCWGG	3 cut(s)	939, 1458, 1560
BseCI	ATCGAT	1 cut(s)	736
BseDI	CCNNGG	2 cut(s)	51, 1376
BseLI	CCNNNNNNNGG	4 cut(s)	1822, 2200, 2239, 2615
BseMI	GCAATG	2 cut(s)	872, 1370
BseNI	ACTGG	3 cut(s)	1829, 2181, 2611
BseRI	GAGGAG	5 cut(s)	51, 266, 890, 1911, 2021
BseSI	GKGCMC	2 cut(s)	1598, 2382
BseXI	GCAGC	7 cut(s)	406, 1784, 2008, 2119, 2122, 2333, 2380
BseYI	CCCAGC	1 cut(s)	2772
Bsh1236I	CGCG	1 cut(s)	1986
Bsh1285I	CGRYCG	1 cut(s)	1618
BshFI	GGCC	8 cut(s)	821, 1026, 1251, 2243, 2264, 2507, 2548, 2629
BshNI	GGYRCC	2 cut(s)	1562, 2082
BshTI	ACCGGT	1 cut(s)	2382
BshVI	ATCGAT	1 cut(s)	736
BsiEI	CGRYCG	1 cut(s)	1618
BsiHKAI	GWGCWC	7 cut(s)	69, 100, 186, 298, 2072, 2289, 2382
BsiHKCI	CYCGRG	1 cut(s)	2792
BsiSI	CCGG	5 cut(s)	101, 212, 697, 1816, 2383
BslFI	GGGAC	2 cut(s)	1238, 2591
BslI	CCNNNNNNNGG	4 cut(s)	1822, 2200, 2239, 2615
BsmAI	GTCTC	6 cut(s)	518, 1135, 1239, 1940, 2150, 2403
BsmBI	CGTCTC	2 cut(s)	1135, 2403
BsmFI	GGGAC	2 cut(s)	1238, 2591
BsmI	GAATGC	1 cut(s)	1057
BsnI	GGCC	8 cut(s)	821, 1026, 1251, 2243, 2264, 2507, 2548, 2629
Bso31I	GGTCTC	1 cut(s)	2150
BsoBI	CYCGRG	1 cut(s)	2792
Bsp1286I	GDGCHC	9 cut(s)	69, 100, 186, 298, 1598, 2072, 2289, 2382, 2772
Bsp1407I	TGTACA	1 cut(s)	1490
Bsp1720I	GCTNAGC	2 cut(s)	1089, 2288
Bsp19I	CCATGG	1 cut(s)	1376
BspACI	CCGC	9 cut(s)	13, 76, 93, 147, 702, 1048, 1211, 1367, 2558
BspANI	GGCC	8 cut(s)	821, 1026, 1251, 2243, 2264, 2507, 2548, 2629
BspDI	ATCGAT	1 cut(s)	736
BspFNI	CGCG	1 cut(s)	1986
BspHI	TCATGA	1 cut(s)	1951
BspLI	GGNNCC	8 cut(s)	936, 1080, 1452, 1564, 1827, 1900, 2084, 2440
BspMAI	CTGCAG	4 cut(s)	523, 1396, 1774, 2739
BspOI	GCTAGC	1 cut(s)	1691
BspPI	GGATC	7 cut(s)	1078, 1150, 1820, 1833, 1949, 2204, 2577
BspQI	GCTCTTC	1 cut(s)	1503
BspT107I	GGYRCC	2 cut(s)	1562, 2082
BspTI	CTTAAG	1 cut(s)	2798
BspTNI	GGTCTC	1 cut(s)	2150
BsrBI	CCGCTC	1 cut(s)	15
BsrDI	GCAATG	2 cut(s)	872, 1370
BsrFI	RCCGGY	2 cut(s)	1815, 2382
BsrGI	TGTACA	1 cut(s)	1490
BsrI	ACTGG	3 cut(s)	1829, 2181, 2611
BssAI	RCCGGY	2 cut(s)	1815, 2382
BssECI	CCNNGG	2 cut(s)	51, 1376
BssNAI	GTATAC	2 cut(s)	2334, 2408
BssNI	GRCGYC	1 cut(s)	2083
BssT1I	CCWWGG	2 cut(s)	51, 1376
Bst1107I	GTATAC	2 cut(s)	2334, 2408
Bst2UI	CCWGG	3 cut(s)	939, 1458, 1560
Bst4CI	ACNGT	5 cut(s)	157, 529, 1229, 2425, 2743
Bst6I	CTCTTC	3 cut(s)	501, 897, 1503
BstACI	GRCGYC	1 cut(s)	2083
BstAFI	CTTAAG	1 cut(s)	2798
BstAPI	GCANNNNNTGC	2 cut(s)	114, 2386
BstAUI	TGTACA	1 cut(s)	1490
BstBAI	YACGTR	1 cut(s)	1436
BstDSI	CCRYGG	1 cut(s)	1376
BstFNI	CGCG	1 cut(s)	1986
BstH2I	RGCGCY	2 cut(s)	144, 2086
BstHHI	GCGC	2 cut(s)	143, 2085
BstMAI	GTCTC	6 cut(s)	518, 1135, 1239, 1940, 2150, 2403
BstMCI	CGRYCG	1 cut(s)	1618
BstNI	CCWGG	3 cut(s)	939, 1458, 1560
BstNSI	RCATGY	3 cut(s)	1002, 1362, 1633
BstSCI	CCNGG	3 cut(s)	937, 1456, 1558
BstSFI	CTRYAG	6 cut(s)	519, 1392, 1770, 1836, 2275, 2735
BstSLI	GKGCMC	2 cut(s)	1598, 2382
BstUI	CGCG	1 cut(s)	1986
BstV1I	GCAGC	7 cut(s)	406, 1784, 2008, 2119, 2122, 2333, 2380
BstX2I	RGATCY	4 cut(s)	1070, 1155, 1825, 2582
BstXI	CCANNNNNNTGG	1 cut(s)	1377
BstYI	RGATCY	4 cut(s)	1070, 1155, 1825, 2582
BstZ17I	GTATAC	2 cut(s)	2334, 2408
Bsu15I	ATCGAT	1 cut(s)	736
Bsu36I	CCTNAGG	1 cut(s)	858
BsuI	GTATCC	2 cut(s)	346, 704
BsuRI	GGCC	8 cut(s)	821, 1026, 1251, 2243, 2264, 2507, 2548, 2629
BsuTUI	ATCGAT	1 cut(s)	736
BtgI	CCRYGG	1 cut(s)	1376
BtrI	CACGTC	2 cut(s)	226, 803
BtsI	GCAGTG	2 cut(s)	949, 1108
BtsIMutI	CAGTG	8 cut(s)	534, 784, 949, 1108, 1941, 2174, 2517, 2748
CaiI	CAGNNNCTG	4 cut(s)	853, 1724, 2039, 2135
CciI	TCATGA	1 cut(s)	1951
CfoI	GCGC	2 cut(s)	143, 2085
Cfr10I	RCCGGY	2 cut(s)	1815, 2382
Cfr13I	GGNCC	5 cut(s)	819, 1450, 2438, 2505, 2627
ClaI	ATCGAT	1 cut(s)	736
CseI	GACGC	2 cut(s)	1629, 2385
Csp6I	GTAC	7 cut(s)	1259, 1491, 1553, 1563, 1975, 2215, 2635
CspAI	ACCGGT	1 cut(s)	2382
CspCI	CAANNNNNGTGG	2 cut(s)	396, 431
CviQI	GTAC	7 cut(s)	1259, 1491, 1553, 1563, 1975, 2215, 2635
DinI	GGCGCC	1 cut(s)	2084
DraI	TTTAAA	1 cut(s)	2469
DrdI	GACNNNNNNGTC	1 cut(s)	532
DriI	GACNNNNNGTC	1 cut(s)	1231
DseDI	GACNNNNNNGTC	1 cut(s)	532
EaeI	YGGCCR	4 cut(s)	1024, 1249, 2241, 2546
Eam1104I	CTCTTC	3 cut(s)	501, 897, 1503
Eam1105I	GACNNNNNGTC	1 cut(s)	1231
EarI	CTCTTC	3 cut(s)	501, 897, 1503
EciI	GGCGGA	1 cut(s)	65
Ecl136II	GAGCTC	3 cut(s)	98, 296, 2287
Eco130I	CCWWGG	2 cut(s)	51, 1376
Eco24I	GRGCYC	4 cut(s)	100, 298, 2289, 2772
Eco31I	GGTCTC	1 cut(s)	2150
Eco32I	GATATC	2 cut(s)	85, 1471
Eco47I	GGWCC	2 cut(s)	1450, 2438
Eco53kI	GAGCTC	3 cut(s)	98, 296, 2287
Eco57I	CTGAAG	1 cut(s)	1941
Eco81I	CCTNAGG	1 cut(s)	858
Eco88I	CYCGRG	1 cut(s)	2792
EcoICRI	GAGCTC	3 cut(s)	98, 296, 2287
EcoO109I	RGGNCCY	3 cut(s)	819, 2505, 2627
EcoRI	GAATTC	1 cut(s)	1161
EcoRII	CCWGG	3 cut(s)	937, 1456, 1558
EcoRV	GATATC	2 cut(s)	85, 1471
EcoT14I	CCWWGG	2 cut(s)	51, 1376
EcoT22I	ATGCAT	1 cut(s)	2255
EcoT38I	GRGCYC	4 cut(s)	100, 298, 2289, 2772
EgeI	GGCGCC	1 cut(s)	2084
EheI	GGCGCC	1 cut(s)	2084
ErhI	CCWWGG	2 cut(s)	51, 1376
Esp3I	CGTCTC	2 cut(s)	1135, 2403
FaqI	GGGAC	2 cut(s)	1238, 2591
FauNDI	CATATG	2 cut(s)	358, 757
FblI	GTMKAC	4 cut(s)	556, 1605, 2333, 2407
Fnu4HI	GCNGC	8 cut(s)	420, 1367, 1773, 2022, 2133, 2136, 2322, 2394
FriOI	GRGCYC	4 cut(s)	100, 298, 2289, 2772
Fsp4HI	GCNGC	8 cut(s)	420, 1367, 1773, 2022, 2133, 2136, 2322, 2394
FspBI	CTAG	5 cut(s)	960, 1178, 1355, 1688, 2247
GlaI	GCGC	2 cut(s)	142, 2084
GluI	GCNGC	8 cut(s)	420, 1367, 1773, 2022, 2133, 2136, 2322, 2394
GsaI	CCCAGC	1 cut(s)	2776
GsuI	CTGGAG	3 cut(s)	269, 1011, 2280
HaeII	RGCGCY	2 cut(s)	144, 2086
HaeIII	GGCC	8 cut(s)	821, 1026, 1251, 2243, 2264, 2507, 2548, 2629
HapII	CCGG	5 cut(s)	101, 212, 697, 1816, 2383
HgaI	GACGC	2 cut(s)	1629, 2385
HhaI	GCGC	2 cut(s)	143, 2085
Hin1I	GRCGYC	1 cut(s)	2083
Hin6I	GCGC	2 cut(s)	141, 2083
HinP1I	GCGC	2 cut(s)	141, 2083
HincII	GTYRAC	2 cut(s)	557, 1821
HindII	GTYRAC	2 cut(s)	557, 1821
HpaII	CCGG	5 cut(s)	101, 212, 697, 1816, 2383
HphI	GGTGA	6 cut(s)	40, 742, 842, 1292, 2216, 2663
Hpy99I	CGWCG	3 cut(s)	227, 1478, 1623
HpyAV	CCTTC	5 cut(s)	490, 914, 1254, 2618, 2650
HpyCH4III	ACNGT	5 cut(s)	157, 529, 1229, 2425, 2743
HpyCH4IV	ACGT	5 cut(s)	21, 225, 802, 1435, 1885
HpySE526I	ACGT	5 cut(s)	21, 225, 802, 1435, 1885
Hsp92I	GRCGYC	1 cut(s)	2083
HspAI	GCGC	2 cut(s)	141, 2083
KasI	GGCGCC	1 cut(s)	2082
KpnI	GGTACC	1 cut(s)	1566
LguI	GCTCTTC	1 cut(s)	1503
LmnI	GCTCC	6 cut(s)	95, 103, 862, 1078, 1898, 2284
Lsp1109I	GCAGC	7 cut(s)	406, 1784, 2008, 2119, 2122, 2333, 2380
MaeI	CTAG	5 cut(s)	960, 1178, 1355, 1688, 2247
MaeII	ACGT	5 cut(s)	21, 225, 802, 1435, 1885
MaeIII	GTNAC	4 cut(s)	361, 1540, 1831, 2121
MbiI	CCGCTC	1 cut(s)	15
MflI	RGATCY	4 cut(s)	1070, 1155, 1825, 2582
MhlI	GDGCHC	9 cut(s)	69, 100, 186, 298, 1598, 2072, 2289, 2382, 2772
MlsI	TGGCCA	2 cut(s)	1251, 2243
MluNI	TGGCCA	2 cut(s)	1251, 2243
Mly113I	GGCGCC	1 cut(s)	2083
MlyI	GAGTC	3 cut(s)	542, 562, 1942
MmeI	TCCRAC	3 cut(s)	742, 2120, 2444
Mox20I	TGGCCA	2 cut(s)	1251, 2243
Mph1103I	ATGCAT	1 cut(s)	2255
MroXI	GAANNNNTTC	3 cut(s)	924, 1185, 2304
MscI	TGGCCA	2 cut(s)	1251, 2243
MseI	TTAA	8 cut(s)	470, 629, 1761, 1904, 2052, 2220, 2468, 2799
MslI	CAYNNNNRTG	4 cut(s)	176, 368, 1375, 1628
Msp20I	TGGCCA	2 cut(s)	1251, 2243
MspA1I	CMGCKG	1 cut(s)	2132
MspCI	CTTAAG	1 cut(s)	2798
MspI	CCGG	5 cut(s)	101, 212, 697, 1816, 2383
MspR9I	CCNGG	3 cut(s)	939, 1458, 1560
Mva1269I	GAATGC	1 cut(s)	1057
MvaI	CCWGG	3 cut(s)	939, 1458, 1560
MvnI	CGCG	1 cut(s)	1986
NarI	GGCGCC	1 cut(s)	2083
NcoI	CCATGG	1 cut(s)	1376
NdeI	CATATG	2 cut(s)	358, 757
NheI	GCTAGC	1 cut(s)	1687
NlaIV	GGNNCC	8 cut(s)	936, 1080, 1452, 1564, 1827, 1900, 2084, 2440
NmuCI	GTSAC	1 cut(s)	361
NsiI	ATGCAT	1 cut(s)	2255
NspI	RCATGY	3 cut(s)	1002, 1362, 1633
OliI	CACNNNNGTG	1 cut(s)	176
PaeI	GCATGC	1 cut(s)	1362
PaeR7I	CTCGAG	1 cut(s)	2792
PagI	TCATGA	1 cut(s)	1951
PciI	ACATGT	1 cut(s)	998
PciSI	GCTCTTC	1 cut(s)	1503
PctI	GAATGC	1 cut(s)	1057
PdmI	GAANNNNTTC	3 cut(s)	924, 1185, 2304
PfeI	GAWTC	8 cut(s)	208, 733, 983, 1147, 1217, 2047, 2183, 2748
PflMI	CCANNNNNTGG	1 cut(s)	2200
PfoI	TCCNGGA	1 cut(s)	1456
PinAI	ACCGGT	1 cut(s)	2382
PkrI	GCNGC	8 cut(s)	421, 1368, 1774, 2023, 2134, 2137, 2323, 2395
Ple19I	CGATCG	1 cut(s)	1618
PleI	GAGTC	3 cut(s)	541, 561, 1942
PluTI	GGCGCC	1 cut(s)	2086
PpsI	GAGTC	3 cut(s)	541, 561, 1942
Ppu21I	YACGTR	1 cut(s)	1436
PscI	ACATGT	1 cut(s)	998
PsiI	TTATAA	1 cut(s)	1043
Psp124BI	GAGCTC	3 cut(s)	100, 298, 2289
Psp6I	CCWGG	3 cut(s)	937, 1456, 1558
PspFI	CCCAGC	1 cut(s)	2772
PspGI	CCWGG	3 cut(s)	937, 1456, 1558
PspN4I	GGNNCC	8 cut(s)	936, 1080, 1452, 1564, 1827, 1900, 2084, 2440
PspPI	GGNCC	5 cut(s)	819, 1450, 2438, 2505, 2627
PspXI	VCTCGAGB	1 cut(s)	2792
PsrI	GAACNNNNNNTAC	3 cut(s)	34, 2106, 2138
PstI	CTGCAG	4 cut(s)	523, 1396, 1774, 2739
PstNI	CAGNNNCTG	4 cut(s)	853, 1724, 2039, 2135
PsuI	RGATCY	4 cut(s)	1070, 1155, 1825, 2582
PvuI	CGATCG	1 cut(s)	1618
PvuII	CAGCTG	1 cut(s)	2132
RsaI	GTAC	7 cut(s)	1260, 1492, 1554, 1564, 1976, 2216, 2636
RsaNI	GTAC	7 cut(s)	1259, 1491, 1553, 1563, 1975, 2215, 2635
RseI	CAYNNNNRTG	4 cut(s)	176, 368, 1375, 1628
SacI	GAGCTC	3 cut(s)	100, 298, 2289
SalI	GTCGAC	1 cut(s)	555
SapI	GCTCTTC	1 cut(s)	1503
SaqAI	TTAA	8 cut(s)	470, 629, 1761, 1904, 2052, 2220, 2468, 2799
SatI	GCNGC	8 cut(s)	420, 1367, 1773, 2022, 2133, 2136, 2322, 2394
Sau96I	GGNCC	5 cut(s)	819, 1450, 2438, 2505, 2627
SchI	GAGTC	3 cut(s)	542, 562, 1942
ScrFI	CCNGG	3 cut(s)	939, 1458, 1560
SduI	GDGCHC	9 cut(s)	69, 100, 186, 298, 1598, 2072, 2289, 2382, 2772
SfcI	CTRYAG	6 cut(s)	519, 1392, 1770, 1836, 2275, 2735
SfoI	GGCGCC	1 cut(s)	2084
Sfr274I	CTCGAG	1 cut(s)	2792
SinI	GGWCC	2 cut(s)	1450, 2438
SlaI	CTCGAG	1 cut(s)	2792
SmiMI	CAYNNNNRTG	4 cut(s)	176, 368, 1375, 1628
SmlI	CTYRAG	4 cut(s)	1347, 1794, 2792, 2798
SmoI	CTYRAG	4 cut(s)	1347, 1794, 2792, 2798
SphI	GCATGC	1 cut(s)	1362
SsiI	CCGC	9 cut(s)	13, 76, 93, 147, 702, 1048, 1211, 1367, 2558
SspDI	GGCGCC	1 cut(s)	2082
SspMI	CTAG	5 cut(s)	960, 1178, 1355, 1688, 2247
SstI	GAGCTC	3 cut(s)	100, 298, 2289
StyD4I	CCNGG	3 cut(s)	937, 1456, 1558
StyI	CCWWGG	2 cut(s)	51, 1376
TaaI	ACNGT	5 cut(s)	157, 529, 1229, 2425, 2743
TaiI	ACGT	5 cut(s)	24, 228, 805, 1438, 1888
TaqII	GACCGA	2 cut(s)	1591, 2800
TatI	WGTACW	3 cut(s)	1490, 1552, 2634
TauI	GCSGC	1 cut(s)	1369
TfiI	GAWTC	8 cut(s)	208, 733, 983, 1147, 1217, 2047, 2183, 2748
Tru1I	TTAA	8 cut(s)	470, 629, 1761, 1904, 2052, 2220, 2468, 2799
Tru9I	TTAA	8 cut(s)	470, 629, 1761, 1904, 2052, 2220, 2468, 2799
TscAI	CASTG	8 cut(s)	534, 784, 949, 1108, 1948, 2181, 2517, 2748
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	7 cut(s)	419, 1772, 2021, 2132, 2135, 2321, 2393
Tsp45I	GTSAC	1 cut(s)	361
TspGWI	ACGGA	7 cut(s)	265, 380, 1838, 2140, 2202, 2222, 2567
TspRI	CASTG	8 cut(s)	534, 784, 949, 1108, 1948, 2181, 2517, 2748
Van91I	CCANNNNNTGG	1 cut(s)	2200
Vha464I	CTTAAG	1 cut(s)	2798
VneI	GTGCAC	1 cut(s)	2378
VpaK11BI	GGWCC	2 cut(s)	1450, 2438
XapI	RAATTY	4 cut(s)	320, 1161, 1546, 2464
XceI	RCATGY	3 cut(s)	1002, 1362, 1633
XhoI	CTCGAG	1 cut(s)	2792
XmiI	GTMKAC	4 cut(s)	556, 1605, 2333, 2407
XmnI	GAANNNNTTC	3 cut(s)	924, 1185, 2304
XspI	CTAG	5 cut(s)	960, 1178, 1355, 1688, 2247
Zsp2I	ATGCAT	1 cut(s)	2255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.