Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0012191

Physical Location & Seq

Genomic Coordinates Reverse (-)

6358898 .. 6360390

Gene Structure 1493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g11640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGGTTCTATTGGAAGTTCTGGAGCAGAGGTTGTGACTATTGATGTTCAAGAAGCTAAGGATCTGATCAAGTCTGGCTATGGCTATATGGATGTTAGGACCGTGGAGGAGTTTAAGAGAGGATATGTGGATGCAGAGAAGATTTACAATATTCCTTACATGTTCAACATACCTGAGGGTAGAGTGAAAAATCCCGATTTCTTGAAAGAGGTTGAATCTACTTGCAACAAAGAAGATCATATTATTGTGGGTTGTCAAAGTGGGGTTAGATCCCTATATGCAGTTGCTGATCTTCAGAATGTTGGATACAAGCATTTGAGCAACATGGGAGGAGGTTATTTGGCTTGGACAGAGAAACATTTTCCTGTTGTTAAGCCAGAAGATGCAGATCAGAAAAAGCCAGAAGTTGTTGAGCAAAAAAAGCCGGAAGATGTTGAGCAGAAAAAGTCACAAGCTGAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000306 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0019898 GO:0031090 GO:0031312 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Rhodanese zf-RING_11 zf-RING_2

Protein Analysis

155

Amino Acids

17.28

Weight (kDa)

5.15

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhodanese	PF00581	16 - 118	3.7e-11	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66170 AT5G66170 AT5G66170
fragaria_vesca	FvH4_1g11640 FvH4_1g11640
malus_domestica	MD02G1129500.v1.1 MD15G1243800.v1.1
prunus_persica	Prupe.7G170100_v2.0.a1 Prupe.7G170100_v2.0.a1
pyrus_communis	pycom02g10140 pycom15g21470
rosa_chinensis	RchiOBHm_Chr2g0099231
rosa_laevigata	RLG00000016863
rosa_roxburghii	Rroxscaffold_2G00143300
rosa_samantha	Rh2AG127200 Rh2BG130200 Rh2CG131400 Rh2DG131800
rosa_wichuraiana	Rw2G009810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	69, 264
AcuI	CTGAAG	1 cut(s)	278
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	4 cut(s)	50, 166, 205, 215
AluBI	AGCT	3 cut(s)	56, 455, 460
AluI	AGCT	3 cut(s)	56, 455, 460
Alw21I	GWGCWC	1 cut(s)	462
AlwI	GGATC	2 cut(s)	69, 264
AlwNI	CAGNNNCTG	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	99
AvaII	GGWCC	1 cut(s)	99
AxyI	CCTNAGG	1 cut(s)	174
BanII	GRGCYC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	462
BciVI	GTATCC	1 cut(s)	299
BclI	TGATCA	1 cut(s)	66
BfuI	GTATCC	1 cut(s)	299
BlpI	GCTNAGC	1 cut(s)	456
Bme18I	GGWCC	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	99
BmsI	GCATC	2 cut(s)	121, 373
BpmI	CTGGAG	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	57
Bpu1102I	GCTNAGC	1 cut(s)	456
BsaBI	GATNNNNATC	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bse21I	CCTNAGG	1 cut(s)	174
Bse8I	GATNNNNATC	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	2 cut(s)	97, 136
BseJI	GATNNNNATC	1 cut(s)	387
BseMII	CTCAG	2 cut(s)	165, 447
BseRI	GAGGAG	2 cut(s)	122, 345
BsiHKAI	GWGCWC	1 cut(s)	462
BsiSI	CCGG	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	6 cut(s)	61, 66, 235, 269, 289, 388
Bsp1720I	GCTNAGC	1 cut(s)	456
BspCNI	CTCAG	2 cut(s)	166, 448
BspPI	GGATC	2 cut(s)	69, 264
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	6 cut(s)	61, 66, 235, 269, 289, 388
Bst4CI	ACNGT	1 cut(s)	103
BstDEI	CTNAG	3 cut(s)	57, 174, 456
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	2 cut(s)	97, 136
BstKTI	GATC	6 cut(s)	64, 69, 238, 272, 292, 391
BstMBI	GATC	6 cut(s)	61, 66, 235, 269, 289, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	421
BstNSI	RCATGY	1 cut(s)	163
BstX2I	RGATCY	2 cut(s)	61, 269
BstYI	RGATCY	2 cut(s)	61, 269
Bsu36I	CCTNAGG	1 cut(s)	174
BsuI	GTATCC	1 cut(s)	299
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	97, 136
CaiI	CAGNNNCTG	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	99
CviAII	CATG	2 cut(s)	160, 325
CviJI	RGCY	9 cut(s)	56, 78, 84, 344, 376, 400, 424, 455, 460
CviKI_1	RGCY	9 cut(s)	56, 78, 84, 344, 376, 400, 424, 455, 460
DdeI	CTNAG	3 cut(s)	57, 174, 456
DpnI	GATC	6 cut(s)	63, 68, 237, 271, 291, 390
DpnII	GATC	6 cut(s)	61, 66, 235, 269, 289, 388
Ecl136II	GAGCTC	1 cut(s)	460
Eco24I	GRGCYC	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	99
Eco53kI	GAGCTC	1 cut(s)	460
Eco57I	CTGAAG	1 cut(s)	278
Eco81I	CCTNAGG	1 cut(s)	174
EcoICRI	GAGCTC	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	462
FaeI	CATG	2 cut(s)	163, 328
FatI	CATG	2 cut(s)	159, 324
FbaI	TGATCA	1 cut(s)	66
FokI	GGATG	2 cut(s)	104, 143
FriOI	GRGCYC	1 cut(s)	462
GsuI	CTGGAG	1 cut(s)	42
HapII	CCGG	1 cut(s)	425
Hin1II	CATG	2 cut(s)	163, 328
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	1 cut(s)	425
Hpy188I	TCNGA	3 cut(s)	66, 297, 393
Hpy188III	TCNNGA	4 cut(s)	21, 50, 194, 202
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	4 cut(s)	134, 225, 281, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	421
HpyF3I	CTNAG	3 cut(s)	57, 174, 456
Hsp92II	CATG	2 cut(s)	163, 328
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	6 cut(s)	61, 66, 235, 269, 289, 388
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	7 cut(s)	6, 60, 186, 378, 390, 414, 438
LweI	GCATC	2 cut(s)	121, 373
MaeIII	GTNAC	2 cut(s)	34, 447
MalI	GATC	6 cut(s)	63, 68, 237, 271, 291, 390
MboI	GATC	6 cut(s)	61, 66, 235, 269, 289, 388
MboII	GAAGA	5 cut(s)	151, 245, 284, 392, 440
MflI	RGATCY	2 cut(s)	61, 269
MhlI	GDGCHC	1 cut(s)	462
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	7 cut(s)	22, 100, 113, 169, 202, 323, 326
MseI	TTAA	2 cut(s)	114, 372
MspI	CCGG	1 cut(s)	425
MwoI	GCNNNNNNNGC	1 cut(s)	421
NdeII	GATC	6 cut(s)	61, 66, 235, 269, 289, 388
NlaIII	CATG	2 cut(s)	163, 328
NmuCI	GTSAC	2 cut(s)	34, 447
NspI	RCATGY	1 cut(s)	163
PciI	ACATGT	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	215
PscI	ACATGT	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	462
PspPI	GGNCC	1 cut(s)	99
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	2 cut(s)	61, 269
SacI	GAGCTC	1 cut(s)	462
SaqAI	TTAA	2 cut(s)	114, 372
Sau3AI	GATC	6 cut(s)	61, 66, 235, 269, 289, 388
Sau96I	GGNCC	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	462
SetI	ASST	7 cut(s)	33, 58, 175, 213, 337, 457, 462
SfaNI	GCATC	2 cut(s)	121, 373
SinI	GGWCC	1 cut(s)	99
SspI	AATATT	1 cut(s)	151
SstI	GAGCTC	1 cut(s)	462
TaaI	ACNGT	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	2 cut(s)	114, 372
Tru9I	TTAA	2 cut(s)	114, 372
TseFI	GTSAC	2 cut(s)	34, 447
Tsp45I	GTSAC	2 cut(s)	34, 447
VpaK11BI	GGWCC	1 cut(s)	99
XceI	RCATGY	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.