Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0012191

Physical Location & Seq

Genomic Coordinates Reverse (-)

11118338 .. 11119352

Gene Structure 1015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG131800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGAGAGTTTATTGGTTGGTAGTCCCTTGTGGGTTTGTTGCTTTATTGCTTGTGTTATTTTGTAGCTCCGGGGATGAGGTTGTGACTATTGATGTTCAAGAAGCTAAGGATCTGATCAAGTCTGGCTATGGCTATATGGATGTTAGGACTGTGGAGGAGTTCAAGAGAGGGTATGTGGATGCAGAGAAGATTTACAATATTCCTTACATGTTCAATACCCCTGAAGGTAGAGTGAAAAATCCTGATTTCTTGAAAGAGGTTGCATCTGCTTGCAGCAAAGAAGATCATATTGTTGTGGGTTGTCAAAGTGGGGTTAGATCCCTATATGCAGTTGCTGATCTTCAAAATGTTGGTTACAAGCATCTGAGCAACATGGGAGGAGGTTATTTGGCTTGGACAGAGAAACATTTTCCTGTTGTTAAGCCAGAAGATGTAGATCAGAAAAAGCCAGAAATTGTTGAGCTAAAAAAGCCAGAAGATGATGAGGAGAAAAAGCCAGAACTTGTGGAGCCAAAAAAGCCAGAAGATGTTGAGCAGAAAAAGCCAGAAGCTGAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000306 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0019898 GO:0031090 GO:0031312 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Rhodanese zf-RING_11 zf-RING_2

Protein Analysis

186

Amino Acids

21.09

Weight (kDa)

4.97

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhodanese	PF00581	32 - 134	8e-11	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66170 AT5G66170 AT5G66170
fragaria_vesca	FvH4_1g11640 FvH4_1g11640
malus_domestica	MD02G1129500.v1.1 MD15G1243800.v1.1
prunus_persica	Prupe.7G170100_v2.0.a1 Prupe.7G170100_v2.0.a1
pyrus_communis	pycom02g10140 pycom15g21470
rosa_chinensis	RchiOBHm_Chr2g0099231
rosa_laevigata	RLG00000016863
rosa_roxburghii	Rroxscaffold_2G00143300
rosa_samantha	Rh2AG127200 Rh2BG130200 Rh2CG131400 Rh2DG131800
rosa_wichuraiana	Rw2G009810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	117, 312
AcuI	CTGAAG	1 cut(s)	243
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	5 cut(s)	98, 163, 214, 253, 344
AluBI	AGCT	5 cut(s)	66, 104, 463, 551, 556
AluI	AGCT	5 cut(s)	66, 104, 463, 551, 556
Alw21I	GWGCWC	1 cut(s)	558
AlwI	GGATC	2 cut(s)	117, 312
AlwNI	CAGNNNCTG	2 cut(s)	335, 551
ApeKI	GCWGC	1 cut(s)	273
AsuC2I	CCSGG	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	558
Bbv12I	GWGCWC	1 cut(s)	558
BbvI	GCAGC	1 cut(s)	285
BclI	TGATCA	1 cut(s)	114
BcnI	CCSGG	1 cut(s)	70
BfaI	CTAG	1 cut(s)	559
BisI	GCNGC	1 cut(s)	274
BlpI	GCTNAGC	1 cut(s)	552
BlsI	GCNGC	1 cut(s)	275
Bme1390I	CCNGG	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	510
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	3 cut(s)	169, 272, 370
Bpu10I	CCTNAGC	1 cut(s)	105
Bpu1102I	GCTNAGC	1 cut(s)	552
BpuMI	CCSGG	1 cut(s)	70
BsaBI	GATNNNNATC	1 cut(s)	435
BsaJI	CCNNGG	1 cut(s)	69
Bse8I	GATNNNNATC	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	3 cut(s)	79, 145, 184
BseJI	GATNNNNATC	1 cut(s)	435
BseMII	CTCAG	2 cut(s)	356, 543
BseRI	GAGGAG	3 cut(s)	170, 393, 500
BseXI	GCAGC	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	558
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	8
BsmFI	GGGAC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp143I	GATC	6 cut(s)	109, 114, 283, 317, 337, 436
Bsp1720I	GCTNAGC	1 cut(s)	552
BspCNI	CTCAG	2 cut(s)	357, 544
BspLI	GGNNCC	1 cut(s)	510
BspPI	GGATC	2 cut(s)	117, 312
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	6 cut(s)	109, 114, 283, 317, 337, 436
Bst4CI	ACNGT	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	3 cut(s)	105, 365, 552
BstF5I	GGATG	3 cut(s)	79, 145, 184
BstKTI	GATC	6 cut(s)	112, 117, 286, 320, 340, 439
BstMBI	GATC	6 cut(s)	109, 114, 283, 317, 337, 436
BstMWI	GCNNNNNNNGC	3 cut(s)	469, 517, 541
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	285
BstX2I	RGATCY	2 cut(s)	109, 317
BstYI	RGATCY	2 cut(s)	109, 317
BtsCI	GGATG	3 cut(s)	79, 145, 184
Cac8I	GCNNGC	1 cut(s)	271
CaiI	CAGNNNCTG	2 cut(s)	335, 551
CviAII	CATG	2 cut(s)	208, 373
DdeI	CTNAG	3 cut(s)	105, 365, 552
DpnI	GATC	6 cut(s)	111, 116, 285, 319, 339, 438
DpnII	GATC	6 cut(s)	109, 114, 283, 317, 337, 436
Ecl136II	GAGCTC	1 cut(s)	556
Eco24I	GRGCYC	1 cut(s)	558
Eco53kI	GAGCTC	1 cut(s)	556
Eco57I	CTGAAG	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	556
EcoT38I	GRGCYC	1 cut(s)	558
FaeI	CATG	2 cut(s)	211, 376
FaiI	YATR	9 cut(s)	129, 135, 137, 174, 209, 288, 325, 327, 374
FaqI	GGGAC	1 cut(s)	8
FatI	CATG	2 cut(s)	207, 372
FbaI	TGATCA	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	274
FokI	GGATG	3 cut(s)	86, 152, 191
FriOI	GRGCYC	1 cut(s)	558
Fsp4HI	GCNGC	1 cut(s)	274
FspBI	CTAG	1 cut(s)	559
GluI	GCNGC	1 cut(s)	274
HapII	CCGG	1 cut(s)	69
Hin1II	CATG	2 cut(s)	211, 376
HpaII	CCGG	1 cut(s)	69
Hpy188I	TCNGA	3 cut(s)	114, 366, 441
Hpy188III	TCNNGA	4 cut(s)	98, 163, 242, 250
HpyAV	CCTTC	1 cut(s)	218
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	4 cut(s)	182, 263, 273, 329
HpyF10VI	GCNNNNNNNGC	3 cut(s)	469, 517, 541
HpyF3I	CTNAG	3 cut(s)	105, 365, 552
Hsp92II	CATG	2 cut(s)	211, 376
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	6 cut(s)	109, 114, 283, 317, 337, 436
LmnI	GCTCC	2 cut(s)	71, 508
Lsp1109I	GCAGC	1 cut(s)	285
LweI	GCATC	3 cut(s)	169, 272, 370
MaeI	CTAG	1 cut(s)	559
MaeIII	GTNAC	2 cut(s)	82, 353
MalI	GATC	6 cut(s)	111, 116, 285, 319, 339, 438
MboI	GATC	6 cut(s)	109, 114, 283, 317, 337, 436
MboII	GAAGA	6 cut(s)	199, 293, 332, 440, 488, 536
MflI	RGATCY	2 cut(s)	109, 317
MhlI	GDGCHC	1 cut(s)	558
MluCI	AATT	1 cut(s)	453
MnlI	CCTC	7 cut(s)	70, 148, 161, 250, 371, 374, 478
MseI	TTAA	1 cut(s)	420
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	3 cut(s)	469, 517, 541
NciI	CCSGG	1 cut(s)	70
NdeII	GATC	6 cut(s)	109, 114, 283, 317, 337, 436
NlaIII	CATG	2 cut(s)	211, 376
NlaIV	GGNNCC	1 cut(s)	510
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	211
PciI	ACATGT	1 cut(s)	207
PkrI	GCNGC	1 cut(s)	275
PscI	ACATGT	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	558
PspN4I	GGNNCC	1 cut(s)	510
PstNI	CAGNNNCTG	2 cut(s)	335, 551
PsuI	RGATCY	2 cut(s)	109, 317
SacI	GAGCTC	1 cut(s)	558
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	1 cut(s)	274
Sau3AI	GATC	6 cut(s)	109, 114, 283, 317, 337, 436
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	1 cut(s)	558
SetI	ASST	9 cut(s)	68, 81, 106, 229, 261, 385, 465, 553, 558
SfaNI	GCATC	3 cut(s)	169, 272, 370
Sse9I	AATT	1 cut(s)	453
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	1 cut(s)	559
SstI	GAGCTC	1 cut(s)	558
StyD4I	CCNGG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	151
TasI	AATT	1 cut(s)	453
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	273
Tsp45I	GTSAC	1 cut(s)	82
XceI	RCATGY	1 cut(s)	211
XspI	CTAG	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.