Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0012191

Physical Location & Seq

Genomic Coordinates Reverse (-)

10767028 .. 10768062

Gene Structure 1035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016863

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGGTTCTATTGGAAGCTCCGGGAATGAGGTTGTTACTATTGATGTTCAAGAAGCTAAGGATCTGATCAAGTCTGGCTATGGCTATATGGATGTTAGGACTGTGGAGGAGTTCAAGAGAGGGTATGTGGATGCAGAGAAGATTTACAATATTCCTTACATGTTCAATACCCCTGAAGGTAGAGTGAAAAATCCTGATTTCTTGAAAGAGGTTGCATCTGCTTGCAGCAAAGAAGATCATATTGTTGTGGGTTGTCAAAGTGGGGTTAGATCCCTATATGCAGTTGCTGATCTTCAAAATGTTGGTTACAAGCATCTGAGCAACATGGGCGGAGGTTATTTGGCTTGGACAGAGAAACATTTTCCTGTTGTTAAGCCAGAAGATGTAGATCAGAAAAAGCCAGAAATTGTTGAGCTAAAAAAGCCAGAAGATGATGAGCAGAAAAAGCCAGAACTTGTTGAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000306 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0019898 GO:0031090 GO:0031312 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Rhodanese zf-RING_11 zf-RING_2

Protein Analysis

156

Amino Acids

17.37

Weight (kDa)

5.04

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhodanese	PF00581	16 - 118	4.7e-11	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66170 AT5G66170 AT5G66170
fragaria_vesca	FvH4_1g11640 FvH4_1g11640
malus_domestica	MD02G1129500.v1.1 MD15G1243800.v1.1
prunus_persica	Prupe.7G170100_v2.0.a1 Prupe.7G170100_v2.0.a1
pyrus_communis	pycom02g10140 pycom15g21470
rosa_chinensis	RchiOBHm_Chr2g0099231
rosa_laevigata	RLG00000016863
rosa_roxburghii	Rroxscaffold_2G00143300
rosa_samantha	Rh2AG127200 Rh2BG130200 Rh2CG131400 Rh2DG131800
rosa_wichuraiana	Rw2G009810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	330
AclWI	GGATC	2 cut(s)	69, 264
AcuI	CTGAAG	1 cut(s)	195
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	5 cut(s)	50, 115, 166, 205, 296
AluBI	AGCT	4 cut(s)	18, 56, 415, 463
AluI	AGCT	4 cut(s)	18, 56, 415, 463
Alw21I	GWGCWC	1 cut(s)	465
AlwI	GGATC	2 cut(s)	69, 264
AlwNI	CAGNNNCTG	1 cut(s)	287
ApeKI	GCWGC	1 cut(s)	225
AsuC2I	CCSGG	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	465
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	237
BclI	TGATCA	1 cut(s)	66
BcnI	CCSGG	1 cut(s)	22
BfaI	CTAG	1 cut(s)	466
BisI	GCNGC	1 cut(s)	226
BlsI	GCNGC	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	22
BmsI	GCATC	3 cut(s)	121, 224, 322
Bpu10I	CCTNAGC	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	22
BsaBI	GATNNNNATC	1 cut(s)	387
Bse8I	GATNNNNATC	1 cut(s)	387
BseGI	GGATG	2 cut(s)	97, 136
BseJI	GATNNNNATC	1 cut(s)	387
BseMII	CTCAG	1 cut(s)	308
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp143I	GATC	6 cut(s)	61, 66, 235, 269, 289, 388
BspACI	CCGC	1 cut(s)	330
BspCNI	CTCAG	1 cut(s)	309
BspPI	GGATC	2 cut(s)	69, 264
BssMI	GATC	6 cut(s)	61, 66, 235, 269, 289, 388
Bst4CI	ACNGT	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	2 cut(s)	57, 317
BstF5I	GGATG	2 cut(s)	97, 136
BstKTI	GATC	6 cut(s)	64, 69, 238, 272, 292, 391
BstMBI	GATC	6 cut(s)	61, 66, 235, 269, 289, 388
BstMWI	GCNNNNNNNGC	3 cut(s)	327, 421, 445
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	237
BstX2I	RGATCY	2 cut(s)	61, 269
BstYI	RGATCY	2 cut(s)	61, 269
BtsCI	GGATG	2 cut(s)	97, 136
Cac8I	GCNNGC	1 cut(s)	223
CaiI	CAGNNNCTG	1 cut(s)	287
CviAII	CATG	2 cut(s)	160, 325
DdeI	CTNAG	2 cut(s)	57, 317
DpnI	GATC	6 cut(s)	63, 68, 237, 271, 291, 390
DpnII	GATC	6 cut(s)	61, 66, 235, 269, 289, 388
EciI	GGCGGA	1 cut(s)	345
Ecl136II	GAGCTC	1 cut(s)	463
Eco24I	GRGCYC	1 cut(s)	465
Eco53kI	GAGCTC	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	195
EcoICRI	GAGCTC	1 cut(s)	463
EcoT38I	GRGCYC	1 cut(s)	465
FaeI	CATG	2 cut(s)	163, 328
FaiI	YATR	9 cut(s)	81, 87, 89, 126, 161, 240, 277, 279, 326
FatI	CATG	2 cut(s)	159, 324
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	226
FokI	GGATG	2 cut(s)	104, 143
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	1 cut(s)	226
FspBI	CTAG	1 cut(s)	466
GluI	GCNGC	1 cut(s)	226
HapII	CCGG	1 cut(s)	21
Hin1II	CATG	2 cut(s)	163, 328
HpaII	CCGG	1 cut(s)	21
Hpy188I	TCNGA	3 cut(s)	66, 318, 393
Hpy188III	TCNNGA	4 cut(s)	50, 115, 194, 202
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	4 cut(s)	134, 215, 225, 281
HpyF10VI	GCNNNNNNNGC	3 cut(s)	327, 421, 445
HpyF3I	CTNAG	2 cut(s)	57, 317
Hsp92II	CATG	2 cut(s)	163, 328
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	6 cut(s)	61, 66, 235, 269, 289, 388
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	9 cut(s)	34, 60, 186, 207, 378, 390, 414, 438, 462
Lsp1109I	GCAGC	1 cut(s)	237
LweI	GCATC	3 cut(s)	121, 224, 322
MaeI	CTAG	1 cut(s)	466
MaeIII	GTNAC	2 cut(s)	34, 305
MalI	GATC	6 cut(s)	63, 68, 237, 271, 291, 390
MboI	GATC	6 cut(s)	61, 66, 235, 269, 289, 388
MboII	GAAGA	5 cut(s)	151, 245, 284, 392, 440
MflI	RGATCY	2 cut(s)	61, 269
MhlI	GDGCHC	1 cut(s)	465
MluCI	AATT	1 cut(s)	405
MnlI	CCTC	5 cut(s)	22, 100, 113, 202, 326
MseI	TTAA	1 cut(s)	372
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	3 cut(s)	327, 421, 445
NciI	CCSGG	1 cut(s)	22
NdeII	GATC	6 cut(s)	61, 66, 235, 269, 289, 388
NlaIII	CATG	2 cut(s)	163, 328
NspI	RCATGY	1 cut(s)	163
PciI	ACATGT	1 cut(s)	159
PfoI	TCCNGGA	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	227
PscI	ACATGT	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	465
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	2 cut(s)	61, 269
SacI	GAGCTC	1 cut(s)	465
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	1 cut(s)	226
Sau3AI	GATC	6 cut(s)	61, 66, 235, 269, 289, 388
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	1 cut(s)	465
SetI	ASST	8 cut(s)	20, 33, 58, 181, 213, 337, 417, 465
SfaNI	GCATC	3 cut(s)	121, 224, 322
Sse9I	AATT	1 cut(s)	405
SsiI	CCGC	1 cut(s)	330
SspI	AATATT	1 cut(s)	151
SspMI	CTAG	1 cut(s)	466
SstI	GAGCTC	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	103
TasI	AATT	1 cut(s)	405
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TseI	GCWGC	1 cut(s)	225
XceI	RCATGY	1 cut(s)	163
XspI	CTAG	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.