Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012191

Physical Location & Seq

Genomic Coordinates Forward (+)

81293400 .. 81294827

Gene Structure 1428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00143300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAGAGTTTATTGGTTGGGTGTCCCTTGTGGGTTTGTTGCTTTATTGCTTGTGTTATTTTGTAGCTCCGGGAATGAGGTTGTGACTATTGATGTTCAAGAAGCTAAGGATCTGATCAAGTCTGGCTATGGCTATATGGATGTTAGGACTGTGGAGGAGTTCAAGAGAGGGTATGTGGATGCAGAGAAGATTTACAATATTCCTTACATGTTCAATACCCCTGAAGGTAGAGTGAAAAATCCTGATTTCTTGAAAGAGGTTGCATCTGCTTGCAGCAAAGAAGATCATATTGTTGTGGGTTGTCAAAGTGGGGTTAGATCCCTATATGCAGTTGCTGATCTTCAAAATGTTGGTTACAAGCATCTGAGCAACATGGGAGGAGGTTATTTGGCTTGGACAGGGAAACATTTACCTGTTGTTAAGCCAGAAGATGTAGATCAGAAAAAGCCAGAAATTGTTGAGCTAAAACAGCCAGAAGATGATGAGCAGAAAAAGCCAGAAGATGTTGAGCAGAAAAAGCCAGAAGCTGAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000306 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0019898 GO:0031090 GO:0031312 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Rhodanese zf-RING_11 zf-RING_2

Protein Analysis

178

Amino Acids

20.02

Weight (kDa)

5.07

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhodanese	PF00581	32 - 134	1.2e-10	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66170 AT5G66170 AT5G66170
fragaria_vesca	FvH4_1g11640 FvH4_1g11640
malus_domestica	MD02G1129500.v1.1 MD15G1243800.v1.1
prunus_persica	Prupe.7G170100_v2.0.a1 Prupe.7G170100_v2.0.a1
pyrus_communis	pycom02g10140 pycom15g21470
rosa_chinensis	RchiOBHm_Chr2g0099231
rosa_laevigata	RLG00000016863
rosa_roxburghii	Rroxscaffold_2G00143300
rosa_samantha	Rh2AG127200 Rh2BG130200 Rh2CG131400 Rh2DG131800
rosa_wichuraiana	Rw2G009810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	117, 312
AcuI	CTGAAG	1 cut(s)	243
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	5 cut(s)	98, 163, 214, 253, 344
AluBI	AGCT	5 cut(s)	66, 104, 463, 527, 532
AluI	AGCT	5 cut(s)	66, 104, 463, 527, 532
Alw21I	GWGCWC	1 cut(s)	534
AlwI	GGATC	2 cut(s)	117, 312
AlwNI	CAGNNNCTG	2 cut(s)	335, 527
ApeKI	GCWGC	1 cut(s)	273
AsuC2I	CCSGG	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	534
Bbv12I	GWGCWC	1 cut(s)	534
BbvI	GCAGC	1 cut(s)	285
BclI	TGATCA	1 cut(s)	114
BcnI	CCSGG	1 cut(s)	70
BfaI	CTAG	1 cut(s)	535
BisI	GCNGC	1 cut(s)	274
BlpI	GCTNAGC	1 cut(s)	528
BlsI	GCNGC	1 cut(s)	275
Bme1390I	CCNGG	1 cut(s)	70
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	3 cut(s)	169, 272, 370
Bpu10I	CCTNAGC	1 cut(s)	105
Bpu1102I	GCTNAGC	1 cut(s)	528
BpuMI	CCSGG	1 cut(s)	70
BsaBI	GATNNNNATC	1 cut(s)	435
Bse8I	GATNNNNATC	1 cut(s)	435
BseGI	GGATG	2 cut(s)	145, 184
BseJI	GATNNNNATC	1 cut(s)	435
BseMII	CTCAG	2 cut(s)	356, 519
BseRI	GAGGAG	2 cut(s)	170, 393
BseXI	GCAGC	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	534
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	8
BsmFI	GGGAC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp143I	GATC	6 cut(s)	109, 114, 283, 317, 337, 436
Bsp1720I	GCTNAGC	1 cut(s)	528
BspCNI	CTCAG	2 cut(s)	357, 520
BspPI	GGATC	2 cut(s)	117, 312
BssMI	GATC	6 cut(s)	109, 114, 283, 317, 337, 436
Bst4CI	ACNGT	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	3 cut(s)	105, 365, 528
BstF5I	GGATG	2 cut(s)	145, 184
BstKTI	GATC	6 cut(s)	112, 117, 286, 320, 340, 439
BstMBI	GATC	6 cut(s)	109, 114, 283, 317, 337, 436
BstMWI	GCNNNNNNNGC	3 cut(s)	469, 493, 517
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	285
BstX2I	RGATCY	2 cut(s)	109, 317
BstYI	RGATCY	2 cut(s)	109, 317
BtsCI	GGATG	2 cut(s)	145, 184
Cac8I	GCNNGC	1 cut(s)	271
CaiI	CAGNNNCTG	2 cut(s)	335, 527
CviAII	CATG	2 cut(s)	208, 373
DdeI	CTNAG	3 cut(s)	105, 365, 528
DpnI	GATC	6 cut(s)	111, 116, 285, 319, 339, 438
DpnII	GATC	6 cut(s)	109, 114, 283, 317, 337, 436
Ecl136II	GAGCTC	1 cut(s)	532
Eco24I	GRGCYC	1 cut(s)	534
Eco53kI	GAGCTC	1 cut(s)	532
Eco57I	CTGAAG	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	532
EcoT38I	GRGCYC	1 cut(s)	534
FaeI	CATG	2 cut(s)	211, 376
FaiI	YATR	9 cut(s)	129, 135, 137, 174, 209, 288, 325, 327, 374
FaqI	GGGAC	1 cut(s)	8
FatI	CATG	2 cut(s)	207, 372
FbaI	TGATCA	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	274
FokI	GGATG	2 cut(s)	152, 191
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	1 cut(s)	274
FspBI	CTAG	1 cut(s)	535
GluI	GCNGC	1 cut(s)	274
HapII	CCGG	1 cut(s)	69
Hin1II	CATG	2 cut(s)	211, 376
HpaII	CCGG	1 cut(s)	69
Hpy188I	TCNGA	3 cut(s)	114, 366, 441
Hpy188III	TCNNGA	4 cut(s)	98, 163, 242, 250
HpyAV	CCTTC	1 cut(s)	218
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	4 cut(s)	182, 263, 273, 329
HpyF10VI	GCNNNNNNNGC	3 cut(s)	469, 493, 517
HpyF3I	CTNAG	3 cut(s)	105, 365, 528
Hsp92II	CATG	2 cut(s)	211, 376
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	6 cut(s)	109, 114, 283, 317, 337, 436
LmnI	GCTCC	1 cut(s)	71
Lsp1109I	GCAGC	1 cut(s)	285
LweI	GCATC	3 cut(s)	169, 272, 370
MaeI	CTAG	1 cut(s)	535
MaeIII	GTNAC	2 cut(s)	82, 353
MalI	GATC	6 cut(s)	111, 116, 285, 319, 339, 438
MboI	GATC	6 cut(s)	109, 114, 283, 317, 337, 436
MboII	GAAGA	6 cut(s)	199, 293, 332, 440, 488, 512
MflI	RGATCY	2 cut(s)	109, 317
MhlI	GDGCHC	1 cut(s)	534
MluCI	AATT	1 cut(s)	453
MnlI	CCTC	6 cut(s)	70, 148, 161, 250, 371, 374
MseI	TTAA	1 cut(s)	420
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	3 cut(s)	469, 493, 517
NciI	CCSGG	1 cut(s)	70
NdeII	GATC	6 cut(s)	109, 114, 283, 317, 337, 436
NlaIII	CATG	2 cut(s)	211, 376
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	211
PciI	ACATGT	1 cut(s)	207
PfoI	TCCNGGA	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	275
PscI	ACATGT	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	534
PstNI	CAGNNNCTG	2 cut(s)	335, 527
PsuI	RGATCY	2 cut(s)	109, 317
SacI	GAGCTC	1 cut(s)	534
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	1 cut(s)	274
Sau3AI	GATC	6 cut(s)	109, 114, 283, 317, 337, 436
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	1 cut(s)	534
SfaNI	GCATC	3 cut(s)	169, 272, 370
Sse9I	AATT	1 cut(s)	453
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	1 cut(s)	535
SstI	GAGCTC	1 cut(s)	534
StyD4I	CCNGG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	151
TasI	AATT	1 cut(s)	453
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	273
Tsp45I	GTSAC	1 cut(s)	82
XceI	RCATGY	1 cut(s)	211
XspI	CTAG	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.