Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0012191

Physical Location & Seq

Genomic Coordinates Reverse (-)

11551099 .. 11553232

Gene Structure 2134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG127200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAGTCTAGTTGCTGCATTGAGTGCGAGAAGACAACGACCAATAAAGAATTTGGTGTGGCAGATATGGTCGATGTCTCGACCTAACTATGGAGTTCCTATGCACATTCGAGGTTTGATTGGCATTTCAAAAAGCAATGGGATACGCTCAATGAGCTCCGGGGATGAGGTTGTGACTATTGATGTTCAAGAAGCTAAGGATCTGATCAAGTCTGGCTATGGCTATATGGATGTTAGGACTGTGGAGGAGTTCAAGAGAGGGTATGTGGATGCAGAGAAGATTTACAATATTCCTTACATGTTCAATACCCCTGAAGGTAGAGTGAAAAATCCTGATTTCTTGAAAGAGGTTGCATCTGCTTGCAGCAAAGAAGATCATATTGTTGTGGGTTGTCAAAGTGGGGTTAGATCCCTATATGCAGTTGCTGATCTTCAAAATGTTGGTTACAAGCATCTGAGCAACATGGGAGGAGGTTATTTGGCTTGGACAGAGAAACATTTTCCTGTTGTTAAGCCAGAAGATGTAGATCAGAAAAAGCCAGAAATTGTTGAGCTAAAAAAGCCAGAAGATGATGAGCAGAAAAAGCCAGAACTTGTGGAGCCAAAAAAGCCAGAAGATGTTGAGCAGAAAAAGCCAGAAGCTGAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000306 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0019898 GO:0031090 GO:0031312 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Rhodanese zf-RING_11 zf-RING_2

Protein Analysis

216

Amino Acids

24.42

Weight (kDa)

6.46

Isoelectric Point (pI)

51.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhodanese	PF00581	62 - 164	1.2e-10	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0012191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66170 AT5G66170 AT5G66170
fragaria_vesca	FvH4_1g11640 FvH4_1g11640
malus_domestica	MD02G1129500.v1.1 MD15G1243800.v1.1
prunus_persica	Prupe.7G170100_v2.0.a1 Prupe.7G170100_v2.0.a1
pyrus_communis	pycom02g10140 pycom15g21470
rosa_chinensis	RchiOBHm_Chr2g0099231
rosa_laevigata	RLG00000016863
rosa_roxburghii	Rroxscaffold_2G00143300
rosa_samantha	Rh2AG127200 Rh2BG130200 Rh2CG131400 Rh2DG131800
rosa_wichuraiana	Rw2G009810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	207, 402
AcsI	RAATTY	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	333
AfiI	CCNNNNNNNGG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	6 cut(s)	129, 188, 253, 304, 343, 434
AluBI	AGCT	5 cut(s)	156, 194, 553, 641, 646
AluI	AGCT	5 cut(s)	156, 194, 553, 641, 646
Alw21I	GWGCWC	2 cut(s)	158, 648
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	2 cut(s)	207, 402
AlwNI	CAGNNNCTG	2 cut(s)	425, 641
ApeKI	GCWGC	2 cut(s)	14, 363
ApoI	RAATTY	1 cut(s)	49
AsuC2I	CCSGG	1 cut(s)	160
BanII	GRGCYC	2 cut(s)	158, 648
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	2 cut(s)	158, 648
BbvI	GCAGC	1 cut(s)	375
BciVI	GTATCC	1 cut(s)	135
BclI	TGATCA	1 cut(s)	204
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	2 cut(s)	8, 649
BfuI	GTATCC	1 cut(s)	135
BisI	GCNGC	2 cut(s)	15, 364
BlpI	GCTNAGC	1 cut(s)	642
BlsI	GCNGC	2 cut(s)	16, 365
Bme1390I	CCNGG	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	3 cut(s)	259, 362, 460
BpiI	GAAGAC	1 cut(s)	37
Bpu10I	CCTNAGC	1 cut(s)	195
Bpu1102I	GCTNAGC	1 cut(s)	642
BpuMI	CCSGG	1 cut(s)	160
BsaBI	GATNNNNATC	1 cut(s)	525
BsaJI	CCNNGG	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	142
Bse8I	GATNNNNATC	1 cut(s)	525
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	3 cut(s)	169, 235, 274
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	142
BseMII	CTCAG	2 cut(s)	446, 633
BseRI	GAGGAG	2 cut(s)	260, 483
BseXI	GCAGC	1 cut(s)	375
BsiHKAI	GWGCWC	2 cut(s)	158, 648
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	81
Bsp1286I	GDGCHC	2 cut(s)	158, 648
Bsp143I	GATC	6 cut(s)	199, 204, 373, 407, 427, 526
Bsp1720I	GCTNAGC	1 cut(s)	642
BspCNI	CTCAG	2 cut(s)	447, 634
BspLI	GGNNCC	1 cut(s)	600
BspPI	GGATC	2 cut(s)	207, 402
BsrDI	GCAATG	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	6 cut(s)	199, 204, 373, 407, 427, 526
Bst4CI	ACNGT	1 cut(s)	241
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	361
BstDEI	CTNAG	3 cut(s)	195, 455, 642
BstF5I	GGATG	3 cut(s)	169, 235, 274
BstKTI	GATC	6 cut(s)	202, 207, 376, 410, 430, 529
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	6 cut(s)	199, 204, 373, 407, 427, 526
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 153, 559, 583, 607, 631
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	375
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	2 cut(s)	199, 407
BstYI	RGATCY	2 cut(s)	199, 407
BsuI	GTATCC	1 cut(s)	135
BtsCI	GGATG	3 cut(s)	169, 235, 274
Cac8I	GCNNGC	1 cut(s)	361
CaiI	CAGNNNCTG	2 cut(s)	425, 641
CviAII	CATG	2 cut(s)	298, 463
DdeI	CTNAG	3 cut(s)	195, 455, 642
DpnI	GATC	6 cut(s)	201, 206, 375, 409, 429, 528
DpnII	GATC	6 cut(s)	199, 204, 373, 407, 427, 526
Ecl136II	GAGCTC	2 cut(s)	156, 646
Eco24I	GRGCYC	2 cut(s)	158, 648
Eco53kI	GAGCTC	2 cut(s)	156, 646
Eco57I	CTGAAG	1 cut(s)	333
EcoICRI	GAGCTC	2 cut(s)	156, 646
EcoT38I	GRGCYC	2 cut(s)	158, 648
FaeI	CATG	2 cut(s)	301, 466
FatI	CATG	2 cut(s)	297, 462
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	15, 364
FokI	GGATG	3 cut(s)	176, 242, 281
FriOI	GRGCYC	2 cut(s)	158, 648
Fsp4HI	GCNGC	2 cut(s)	15, 364
FspBI	CTAG	2 cut(s)	8, 649
GluI	GCNGC	2 cut(s)	15, 364
HapII	CCGG	1 cut(s)	159
Hin1II	CATG	2 cut(s)	301, 466
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	159
Hpy188I	TCNGA	3 cut(s)	204, 456, 531
Hpy188III	TCNNGA	5 cut(s)	78, 188, 253, 332, 340
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	6 cut(s)	17, 103, 272, 353, 363, 419
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 153, 559, 583, 607, 631
HpyF3I	CTNAG	3 cut(s)	195, 455, 642
Hsp92II	CATG	2 cut(s)	301, 466
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	6 cut(s)	199, 204, 373, 407, 427, 526
LmnI	GCTCC	2 cut(s)	161, 598
Lsp1109I	GCAGC	1 cut(s)	375
LweI	GCATC	3 cut(s)	259, 362, 460
MaeI	CTAG	2 cut(s)	8, 649
MaeIII	GTNAC	2 cut(s)	172, 443
MalI	GATC	6 cut(s)	201, 206, 375, 409, 429, 528
MboI	GATC	6 cut(s)	199, 204, 373, 407, 427, 526
MboII	GAAGA	7 cut(s)	42, 289, 383, 422, 530, 578, 626
MflI	RGATCY	2 cut(s)	199, 407
MhlI	GDGCHC	2 cut(s)	158, 648
MluCI	AATT	2 cut(s)	49, 543
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	7 cut(s)	104, 160, 238, 251, 340, 461, 464
MseI	TTAA	1 cut(s)	510
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	6 cut(s)	23, 153, 559, 583, 607, 631
NciI	CCSGG	1 cut(s)	160
NdeII	GATC	6 cut(s)	199, 204, 373, 407, 427, 526
NlaIII	CATG	2 cut(s)	301, 466
NlaIV	GGNNCC	1 cut(s)	600
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	301
PciI	ACATGT	1 cut(s)	297
PkrI	GCNGC	2 cut(s)	16, 365
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PscI	ACATGT	1 cut(s)	297
Psp124BI	GAGCTC	2 cut(s)	158, 648
PspN4I	GGNNCC	1 cut(s)	600
PstNI	CAGNNNCTG	2 cut(s)	425, 641
PsuI	RGATCY	2 cut(s)	199, 407
SacI	GAGCTC	2 cut(s)	158, 648
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	2 cut(s)	15, 364
Sau3AI	GATC	6 cut(s)	199, 204, 373, 407, 427, 526
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	160
SduI	GDGCHC	2 cut(s)	158, 648
SfaNI	GCATC	3 cut(s)	259, 362, 460
Sse9I	AATT	2 cut(s)	49, 543
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	2 cut(s)	8, 649
SstI	GAGCTC	2 cut(s)	158, 648
StyD4I	CCNGG	1 cut(s)	158
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	3 cut(s)	71, 79, 109
TasI	AATT	2 cut(s)	49, 543
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	2 cut(s)	14, 363
Tsp45I	GTSAC	1 cut(s)	172
XapI	RAATTY	1 cut(s)	49
XceI	RCATGY	1 cut(s)	301
XspI	CTAG	2 cut(s)	8, 649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.