FvH4_1g11870

WEB family protein At3g51220-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014992
Physical Location & Seq
Forward (+)
6498128 .. 6499701
1574 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11870.t1

Sequence Viewer

Length: 651 bp
ATGAACGCCGAAGAGGGCAAGCTGGTGGTCCGGGGGCGTGCCGAGATTGACACCAGGGCGCCTTTCAGGTCTGTCAAGGAAGCAGTGATGTTGTTTGGTGAAAGAGTTTTAGTTGGGGAAATCTATGGCAACAAGCTCAAAGAGATTGGAGCTGCAGGAGCAAATGAGAATGGACGTGCTCAATCCCGAGTTGAAGTCCTAACAGCTGAGCTTGAAGAAACACAGCAACATCTGGAGAAAGCGAGAGAAGAAAACAAGTTAATGGCATACTCCATAAAGTCTCTCAGAGATGATCTCGACCATGCAAGGAGAGAGCTGTACAACTACGTGAAGGCAAGAGAACAGTTTCAAAAGCACCCAGTTGATCATCAGGATCCTGAGATTGAAGACTTTAAGTTCATTGAAAACGCAACGGAGTTTGAAACTAAGAGGGCATTTAACCAAAACGAAGACGAGTCACAAAAGAAAAGATATGTGAAATTTGCTAGTCCTCCTTCACTTGCCCAAGTCATTGTTAACAAAGAGGAAATGCAAGCAGAGGGGATGAGAAGTCCATCTTCTGTTAAGAAGATGAACAAGAAGAAGCCTCTAATAGGGTGGCTTTTCAACAAAAACAAAACCCTTCAAGTAGGGACTCCAAGATCAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.79

Weight (kDa)

8.9

Isoelectric Point (pI)

54.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014992)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51220
fragaria_vesca FvH4_1g11870
malus_domestica MD02G1132800.v1.1 MD15G1245800.v1.1
pyrus_communis pycom02g10420 pycom15g21630
rosa_chinensis RchiOBHm_Chr2g0099471
rosa_laevigata RLG00000016885
rosa_multiflora Rmu_sc0002542.1_g000014
rosa_roxburghii Rroxscaffold_2G00143050
rosa_rugosa Rorug02G0079900
rosa_samantha Rh2AG129900 Rh2BG133000 Rh2CG133600 Rh2DG133900
rosa_wichuraiana Rw2G010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 58
AclWI GGATC 2 cut(s) 368, 381
AcsI RAATTY 1 cut(s) 479
AcyI GRCGYC 1 cut(s) 59
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 2 cut(s) 593, 644
AgsI TTSAA 8 cut(s) 194, 215, 350, 386, 404, 422, 607, 626
AjiI CACGTC 1 cut(s) 176
AjnI CCWGG 1 cut(s) 53
AluBI AGCT 6 cut(s) 22, 136, 152, 206, 211, 316
AluI AGCT 6 cut(s) 22, 136, 152, 206, 211, 316
Alw21I GWGCWC 1 cut(s) 181
Alw26I GTCTC 1 cut(s) 285
AlwI GGATC 2 cut(s) 368, 381
Ama87I CYCGRG 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 1 cut(s) 479
Asp700I GAANNNNTTC 1 cut(s) 345
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 28
AsuC2I CCSGG 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 110
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 28
BamHI GGATCC 1 cut(s) 373
BanI GGYRCC 1 cut(s) 58
BbsI GAAGAC 2 cut(s) 393, 456
Bbv12I GWGCWC 1 cut(s) 181
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 562
BciT130I CCWGG 1 cut(s) 55
BclI TGATCA 1 cut(s) 364
BcnI CCSGG 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 285
BfaI CTAG 1 cut(s) 486
BfmI CTRYAG 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 62
BisI GCNGC 1 cut(s) 153
BlpI GCTNAGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 2 cut(s) 32, 55
Bme18I GGWCC 1 cut(s) 28
BmeT110I CYCGRG 1 cut(s) 186
BmgBI CACGTC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 28
BmiI GGNNCC 2 cut(s) 60, 375
BmrFI CCNGG 2 cut(s) 32, 55
BmrI ACTGGG 1 cut(s) 353
BmuI ACTGGG 1 cut(s) 353
BpiI GAAGAC 2 cut(s) 393, 456
BplI GAGNNNNNCTC 2 cut(s) 279, 311
BpmI CTGGAG 1 cut(s) 254
Bpu1102I GCTNAGC 1 cut(s) 207
BpuMI CCSGG 1 cut(s) 32
BsaAI YACGTR 1 cut(s) 328
BsaHI GRCGYC 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 31, 54
Bsc4I CCNNNNNNNGG 2 cut(s) 593, 644
Bse1I ACTGG 1 cut(s) 359
BseBI CCWGG 1 cut(s) 55
BseDI CCNNGG 2 cut(s) 31, 54
BseGI GGATG 1 cut(s) 549
BseLI CCNNNNNNNGG 2 cut(s) 593, 644
BseMII CTCAG 3 cut(s) 198, 298, 369
BseNI ACTGG 1 cut(s) 359
BseXI GCAGC 1 cut(s) 139
BshNI GGYRCC 1 cut(s) 58
BsiHKAI GWGCWC 1 cut(s) 181
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 1 cut(s) 31
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 2 cut(s) 593, 644
BsmAI GTCTC 1 cut(s) 285
BsmFI GGGAC 1 cut(s) 646
BsoBI CYCGRG 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 181
Bsp1407I TGTACA 1 cut(s) 318
Bsp143I GATC 4 cut(s) 292, 364, 373, 641
Bsp1720I GCTNAGC 1 cut(s) 207
BspCNI CTCAG 3 cut(s) 199, 297, 370
BspLI GGNNCC 2 cut(s) 60, 375
BspMAI CTGCAG 1 cut(s) 157
BspPI GGATC 2 cut(s) 368, 381
BspT107I GGYRCC 1 cut(s) 58
BsrGI TGTACA 1 cut(s) 318
BsrI ACTGG 1 cut(s) 359
BssECI CCNNGG 2 cut(s) 31, 54
BssMI GATC 4 cut(s) 292, 364, 373, 641
BssNI GRCGYC 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 345
Bst6I CTCTTC 1 cut(s) 6
BstACI GRCGYC 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 318
BstBAI YACGTR 1 cut(s) 328
BstC8I GCNNGC 3 cut(s) 20, 39, 534
BstDEI CTNAG 4 cut(s) 207, 284, 378, 426
BstENI CCTNNNNNAGG 1 cut(s) 591
BstF5I GGATG 1 cut(s) 549
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 4 cut(s) 295, 367, 376, 644
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 4 cut(s) 292, 364, 373, 641
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 55
BstSCI CCNGG 2 cut(s) 30, 53
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 2 cut(s) 393, 456
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BtrI CACGTC 1 cut(s) 176
BtsCI GGATG 1 cut(s) 549
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 3 cut(s) 20, 39, 534
CfoI GCGC 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 319
CviAII CATG 1 cut(s) 302
CviJI RGCY 9 cut(s) 22, 136, 152, 206, 211, 316, 586, 601, 648
CviKI_1 RGCY 9 cut(s) 22, 136, 152, 206, 211, 316, 586, 601, 648
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 4 cut(s) 207, 284, 378, 426
DinI GGCGCC 1 cut(s) 60
DpnI GATC 4 cut(s) 294, 366, 375, 643
DpnII GATC 4 cut(s) 292, 364, 373, 641
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 28
Eco88I CYCGRG 1 cut(s) 186
EcoNI CCTNNNNNAGG 1 cut(s) 591
EcoRII CCWGG 1 cut(s) 53
EgeI GGCGCC 1 cut(s) 60
EheI GGCGCC 1 cut(s) 60
FaeI CATG 1 cut(s) 305
FaiI YATR 5 cut(s) 126, 268, 275, 303, 474
FalI AAGNNNNNCTT 2 cut(s) 541, 573
FaqI GGGAC 1 cut(s) 646
FatI CATG 1 cut(s) 301
FbaI TGATCA 1 cut(s) 364
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 556
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 486
GlaI GCGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 254
HaeII RGCGCY 1 cut(s) 62
HapII CCGG 1 cut(s) 31
HhaI GCGC 1 cut(s) 61
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 1 cut(s) 305
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HinfI GANTC 2 cut(s) 455, 634
HpaI GTTAAC 1 cut(s) 517
HpaII CCGG 1 cut(s) 31
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 1 cut(s) 517
Hpy188I TCNGA 1 cut(s) 287
Hpy188III TCNNGA 5 cut(s) 186, 233, 296, 371, 377
Hpy8I GTNNAC 1 cut(s) 517
HpyAV CCTTC 3 cut(s) 325, 504, 632
HpyCH4III ACNGT 1 cut(s) 345
HpyCH4IV ACGT 2 cut(s) 175, 327
HpyCH4V TGCA 3 cut(s) 155, 305, 532
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 4 cut(s) 207, 284, 378, 426
HpySE526I ACGT 2 cut(s) 175, 327
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 1 cut(s) 305
HspAI GCGC 1 cut(s) 59
KasI GGCGCC 1 cut(s) 58
Ksp22I TGATCA 1 cut(s) 364
KspAI GTTAAC 1 cut(s) 517
Kzo9I GATC 4 cut(s) 292, 364, 373, 641
LmnI GCTCC 2 cut(s) 149, 158
Lsp1109I GCAGC 1 cut(s) 139
MaeI CTAG 1 cut(s) 486
MaeII ACGT 2 cut(s) 175, 327
MaeIII GTNAC 1 cut(s) 456
MalI GATC 4 cut(s) 294, 366, 375, 643
MboI GATC 4 cut(s) 292, 364, 373, 641
MboII GAAGA 8 cut(s) 23, 227, 260, 398, 461, 549, 580, 592
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 1 cut(s) 479
Mly113I GGCGCC 1 cut(s) 59
MlyI GAGTC 2 cut(s) 464, 628
MnlI CCTC 6 cut(s) 7, 423, 501, 517, 532, 597
MroXI GAANNNNTTC 1 cut(s) 345
MseI TTAA 5 cut(s) 260, 393, 438, 516, 564
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 1 cut(s) 31
MspR9I CCNGG 2 cut(s) 32, 55
MvaI CCWGG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 158
NarI GGCGCC 1 cut(s) 59
NciI CCSGG 1 cut(s) 32
NdeII GATC 4 cut(s) 292, 364, 373, 641
NlaIII CATG 1 cut(s) 305
NlaIV GGNNCC 2 cut(s) 60, 375
NmeAIII GCCGAG 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 345
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 2 cut(s) 463, 628
PluTI GGCGCC 1 cut(s) 62
PpsI GAGTC 2 cut(s) 463, 628
Ppu21I YACGTR 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 53
PspGI CCWGG 1 cut(s) 53
PspN4I GGNNCC 2 cut(s) 60, 375
PspPI GGNCC 1 cut(s) 28
PstI CTGCAG 1 cut(s) 157
PsuI RGATCY 1 cut(s) 373
PvuII CAGCTG 1 cut(s) 206
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SaqAI TTAA 5 cut(s) 260, 393, 438, 516, 564
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 4 cut(s) 292, 364, 373, 641
Sau96I GGNCC 1 cut(s) 28
SchI GAGTC 2 cut(s) 464, 628
ScrFI CCNGG 2 cut(s) 32, 55
SduI GDGCHC 1 cut(s) 181
SetI ASST 9 cut(s) 24, 71, 138, 154, 178, 208, 213, 318, 330
SfcI CTRYAG 1 cut(s) 153
SfoI GGCGCC 1 cut(s) 60
SinI GGWCC 1 cut(s) 28
Sse9I AATT 1 cut(s) 479
SspDI GGCGCC 1 cut(s) 58
SspMI CTAG 1 cut(s) 486
StyD4I CCNGG 2 cut(s) 30, 53
TaaI ACNGT 1 cut(s) 345
TaiI ACGT 2 cut(s) 178, 330
TaqI TCGA 1 cut(s) 297
TasI AATT 1 cut(s) 479
TatI WGTACW 1 cut(s) 318
Tru1I TTAA 5 cut(s) 260, 393, 438, 516, 564
Tru9I TTAA 5 cut(s) 260, 393, 438, 516, 564
TscAI CASTG 1 cut(s) 90
TseFI GTSAC 1 cut(s) 456
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 456
TspDTI ATGAA 3 cut(s) 17, 388, 587
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 1 cut(s) 90
VpaK11BI GGWCC 1 cut(s) 28
XagI CCTNNNNNAGG 1 cut(s) 591
XapI RAATTY 1 cut(s) 479
XmnI GAANNNNTTC 1 cut(s) 345
XspI CTAG 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.