Rh2BG133000

WEB family protein At3g51220-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0014992
Physical Location & Seq
Forward (+)
11360075 .. 11361308
1234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG133000.1

Sequence Viewer

Length: 654 bp
ATGAACGCCGAAGAGGGCAAGCTGGTGGTCCGGGGGCGTGCCGAGATTGACACTAGGGCGCCTTTCAGGTCTGTTAAGGAAGCAGTGATGTTGTTTGGAGAAAGAGTTTTAGTTGGGGAGATCTATGGCAACAAGCTCAAAGAGATTGGAGCTGCAGGAGCAAATGAGAATGGACGCACTCAATCCCAAGTTGAAATCTTAACAGCTGAGCTTGAAGAAACAAAGCAAAATCTGGAGAAAGCCAGAGAAGAAAACAAGGCAATGGCATACTGCATAAAGTCCCTCAGAGATGATCTTGACCATGCAAGGAAAGAGCTGTATAACCACTTGAAAGCAAGAGAGCAGTTTCAAAAGCAGTCAGTTGATCATCAGGATCCCGAGATCGAAGACGTTAAATTCATCGAAAATGCAACGGATCAGTTTGAAACTAAGAGGGAATTGAACCAAAATGAAGAGGAGTTTCAGAAGAAAAGATATGTGAAATTTGCAAGTCCTCCTTCACTTGCTCAAGTCATTGTTAACAAAGAGGAAATGCAAGGAGAGGGGCTGAGGGACCCATCTTCTGTTAAGAAGATGAACAAGAAGAAGCCTCTAATAGGGTGGCTTTTCAACAAAAACAAGGCCCTTCAAGGAGGGTCTCCAAGATCAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.78

Weight (kDa)

7.76

Isoelectric Point (pI)

56.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014992)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51220
fragaria_vesca FvH4_1g11870
malus_domestica MD02G1132800.v1.1 MD15G1245800.v1.1
pyrus_communis pycom02g10420 pycom15g21630
rosa_chinensis RchiOBHm_Chr2g0099471
rosa_laevigata RLG00000016885
rosa_multiflora Rmu_sc0002542.1_g000014
rosa_roxburghii Rroxscaffold_2G00143050
rosa_rugosa Rorug02G0079900
rosa_samantha Rh2AG129900 Rh2BG133000 Rh2CG133600 Rh2DG133900
rosa_wichuraiana Rw2G010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 58
AclWI GGATC 3 cut(s) 368, 381, 423
AcsI RAATTY 2 cut(s) 395, 482
AcyI GRCGYC 1 cut(s) 59
AfiI CCNNNNNNNGG 2 cut(s) 596, 647
AgsI TTSAA 8 cut(s) 194, 215, 331, 350, 425, 442, 610, 629
AluBI AGCT 6 cut(s) 22, 136, 152, 206, 211, 316
AluI AGCT 6 cut(s) 22, 136, 152, 206, 211, 316
Alw26I GTCTC 1 cut(s) 642
AlwI GGATC 3 cut(s) 368, 381, 423
Ama87I CYCGRG 1 cut(s) 377
AoxI GGCC 1 cut(s) 621
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 2 cut(s) 395, 482
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 3 cut(s) 28, 553, 622
AsuC2I CCSGG 1 cut(s) 32
AvaI CYCGRG 1 cut(s) 377
AvaII GGWCC 2 cut(s) 28, 553
BamHI GGATCC 1 cut(s) 373
BanI GGYRCC 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 393
BbvCI CCTCAGC 1 cut(s) 548
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 565
BclI TGATCA 1 cut(s) 364
BcnI CCSGG 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 642
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 62
BglII AGATCT 1 cut(s) 120
BisI GCNGC 1 cut(s) 153
BlpI GCTNAGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 2 cut(s) 28, 553
BmeT110I CYCGRG 1 cut(s) 377
BmgT120I GGNCC 3 cut(s) 28, 553, 622
BmiI GGNNCC 4 cut(s) 60, 375, 554, 555
BmrFI CCNGG 1 cut(s) 32
BpiI GAAGAC 1 cut(s) 393
BpmI CTGGAG 1 cut(s) 254
Bpu10I CCTNAGC 1 cut(s) 548
Bpu1102I GCTNAGC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 492
BpuMI CCSGG 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 642
BsaJI CCNNGG 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 90, 120
Bsc4I CCNNNNNNNGG 2 cut(s) 596, 647
Bse3DI GCAATG 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 31
BseLI CCNNNNNNNGG 2 cut(s) 596, 647
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 3 cut(s) 198, 298, 539
BseRI GAGGAG 1 cut(s) 470
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 1 cut(s) 623
BshNI GGYRCC 1 cut(s) 58
BsiHKCI CYCGRG 1 cut(s) 377
BsiSI CCGG 1 cut(s) 31
BslFI GGGAC 2 cut(s) 265, 566
BslI CCNNNNNNNGG 2 cut(s) 596, 647
BsmAI GTCTC 1 cut(s) 642
BsmFI GGGAC 2 cut(s) 265, 566
BsnI GGCC 1 cut(s) 623
Bso31I GGTCTC 1 cut(s) 642
BsoBI CYCGRG 1 cut(s) 377
Bsp143I GATC 7 cut(s) 120, 292, 364, 373, 381, 415, 644
Bsp1720I GCTNAGC 1 cut(s) 207
BspANI GGCC 1 cut(s) 623
BspCNI CTCAG 3 cut(s) 199, 297, 540
BspLI GGNNCC 4 cut(s) 60, 375, 554, 555
BspMAI CTGCAG 1 cut(s) 157
BspPI GGATC 3 cut(s) 368, 381, 423
BspT107I GGYRCC 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 642
BsrDI GCAATG 1 cut(s) 267
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 7 cut(s) 120, 292, 364, 373, 381, 415, 644
BssNI GRCGYC 1 cut(s) 59
Bst6I CTCTTC 2 cut(s) 6, 447
BstACI GRCGYC 1 cut(s) 59
BstC8I GCNNGC 2 cut(s) 20, 39
BstDEI CTNAG 4 cut(s) 207, 284, 429, 548
BstENI CCTNNNNNAGG 1 cut(s) 594
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 7 cut(s) 123, 295, 367, 376, 384, 418, 647
BstMAI GTCTC 1 cut(s) 642
BstMBI GATC 7 cut(s) 120, 292, 364, 373, 381, 415, 644
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 393
BstX2I RGATCY 2 cut(s) 120, 373
BstYI RGATCY 2 cut(s) 120, 373
BsuRI GGCC 1 cut(s) 623
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 2 cut(s) 20, 39
CfoI GCGC 1 cut(s) 61
Cfr13I GGNCC 3 cut(s) 28, 553, 622
CseI GACGC 1 cut(s) 183
CviAII CATG 1 cut(s) 302
DdeI CTNAG 4 cut(s) 207, 284, 429, 548
DinI GGCGCC 1 cut(s) 60
DpnI GATC 7 cut(s) 122, 294, 366, 375, 383, 417, 646
DpnII GATC 7 cut(s) 120, 292, 364, 373, 381, 415, 644
Eam1104I CTCTTC 2 cut(s) 6, 447
EarI CTCTTC 2 cut(s) 6, 447
Eco31I GGTCTC 1 cut(s) 642
Eco47I GGWCC 2 cut(s) 28, 553
Eco88I CYCGRG 1 cut(s) 377
EcoNI CCTNNNNNAGG 1 cut(s) 594
EcoO109I RGGNCCY 2 cut(s) 553, 622
EgeI GGCGCC 1 cut(s) 60
EheI GGCGCC 1 cut(s) 60
FaeI CATG 1 cut(s) 305
FaiI YATR 6 cut(s) 126, 268, 275, 303, 321, 477
FalI AAGNNNNNCTT 2 cut(s) 481, 513
FaqI GGGAC 2 cut(s) 265, 566
FatI CATG 1 cut(s) 301
FbaI TGATCA 1 cut(s) 364
Fnu4HI GCNGC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 54
GlaI GCGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 254
HaeII RGCGCY 1 cut(s) 62
HaeIII GGCC 1 cut(s) 623
HapII CCGG 1 cut(s) 31
HgaI GACGC 1 cut(s) 183
HhaI GCGC 1 cut(s) 61
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 1 cut(s) 305
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HpaI GTTAAC 1 cut(s) 520
HpaII CCGG 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 2 cut(s) 287, 465
Hpy188III TCNNGA 5 cut(s) 233, 296, 371, 377, 648
Hpy8I GTNNAC 1 cut(s) 520
HpyAV CCTTC 2 cut(s) 507, 635
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 6 cut(s) 155, 273, 305, 410, 488, 535
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 4 cut(s) 207, 284, 429, 548
HpySE526I ACGT 1 cut(s) 390
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 1 cut(s) 305
HspAI GCGC 1 cut(s) 59
KasI GGCGCC 1 cut(s) 58
KflI GGGWCCC 1 cut(s) 553
Ksp22I TGATCA 1 cut(s) 364
KspAI GTTAAC 1 cut(s) 520
Kzo9I GATC 7 cut(s) 120, 292, 364, 373, 381, 415, 644
LmnI GCTCC 2 cut(s) 149, 158
LpnPI CCDG 8 cut(s) 8, 44, 52, 141, 218, 256, 356, 633
Lsp1109I GCAGC 1 cut(s) 139
MaeI CTAG 1 cut(s) 54
MaeII ACGT 1 cut(s) 390
MalI GATC 7 cut(s) 122, 294, 366, 375, 383, 417, 646
MboI GATC 7 cut(s) 120, 292, 364, 373, 381, 415, 644
MboII GAAGA 9 cut(s) 23, 227, 260, 398, 464, 478, 552, 583, 595
MflI RGATCY 2 cut(s) 120, 373
MluCI AATT 3 cut(s) 395, 437, 482
Mly113I GGCGCC 1 cut(s) 59
MseI TTAA 5 cut(s) 75, 200, 393, 519, 567
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 1 cut(s) 31
MspR9I CCNGG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 158
NarI GGCGCC 1 cut(s) 59
NciI CCSGG 1 cut(s) 32
NdeII GATC 7 cut(s) 120, 292, 364, 373, 381, 415, 644
NlaIII CATG 1 cut(s) 305
NlaIV GGNNCC 4 cut(s) 60, 375, 554, 555
NmeAIII GCCGAG 1 cut(s) 67
PkrI GCNGC 1 cut(s) 154
PluTI GGCGCC 1 cut(s) 62
PpuMI RGGWCCY 1 cut(s) 553
Psp5II RGGWCCY 1 cut(s) 553
PspN4I GGNNCC 4 cut(s) 60, 375, 554, 555
PspPI GGNCC 3 cut(s) 28, 553, 622
PspPPI RGGWCCY 1 cut(s) 553
PstI CTGCAG 1 cut(s) 157
PsuI RGATCY 2 cut(s) 120, 373
PvuII CAGCTG 1 cut(s) 206
SaqAI TTAA 5 cut(s) 75, 200, 393, 519, 567
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 7 cut(s) 120, 292, 364, 373, 381, 415, 644
Sau96I GGNCC 3 cut(s) 28, 553, 622
ScrFI CCNGG 1 cut(s) 32
SetI ASST 8 cut(s) 24, 71, 138, 154, 208, 213, 318, 393
SfcI CTRYAG 1 cut(s) 153
SfoI GGCGCC 1 cut(s) 60
SinI GGWCC 2 cut(s) 28, 553
SmlI CTYRAG 1 cut(s) 507
SmoI CTYRAG 1 cut(s) 507
Sse9I AATT 3 cut(s) 395, 437, 482
SspDI GGCGCC 1 cut(s) 58
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 30
TaiI ACGT 1 cut(s) 393
TaqI TCGA 2 cut(s) 384, 402
TasI AATT 3 cut(s) 395, 437, 482
Tru1I TTAA 5 cut(s) 75, 200, 393, 519, 567
Tru9I TTAA 5 cut(s) 75, 200, 393, 519, 567
TscAI CASTG 1 cut(s) 90
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 4 cut(s) 17, 388, 465, 590
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 1 cut(s) 90
VpaK11BI GGWCC 2 cut(s) 28, 553
XagI CCTNNNNNAGG 1 cut(s) 594
XapI RAATTY 2 cut(s) 395, 482
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.