pycom02g10420

WEB family protein At3g51220-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0014992
Physical Location & Seq
Forward (+)
7245402 .. 7246414
1013 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g10420.2

Sequence Viewer

Length: 669 bp
ATGAACGCCGACGAGGGTAAACTGGTGGTCATGGGCCGGGCAGAGATCGACACCCGAGCACCTTTCCGGTCAGTCAAAGAAGCAGTTATGTTGTTCGGCGAAAGAGTTTTGGTCGGAGAAATATATGCCAATAAGCTCAAAGAGATTGGAGCTGCAGGGTCAAATGACACTAATGGACATGTTGCTCAGTCGAGGATCGAGGTCTTAATGGTCGAGCTCGAAGAAACAAAGAAAAGTCTACAGAAAGTTAGAGAAGAAAACAACTTAATGGCGTACAGCATCAAGTCACTAAGAGAAGATCTTGAACTTTCAAAACAAGAGCTCCACAATTACTTGAAGGCAAGAGAGTTTGATGATCAGAAGCACCGAGTTGATCCTGAGATTGAAGAAGATTTTAAGTTCATCGCGACCGGAGACACGAAGTTCGAAACCAAAAAAATGTTGAGCCAAGAGGCTGAGGAATTTGTGCAGAAGGAAAGACATGTGAAGTTTGCAAGTCCTCCTTCGTTGGCTCAGGTTATTGTTAACAAAGAAGGGTTGCATGAGGGATATGGAAACCCTAGTTCTGTTAGAAAGCCAAATAAGAAGAAGCCTTTGATGCCTATGATGATTGGATGGCTTTTTCACAAAAGTAAGGCAATTCAGGAAGGTGGGTCTCCGAGAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

25.21

Weight (kDa)

7.04

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014992)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51220
fragaria_vesca FvH4_1g11870
malus_domestica MD02G1132800.v1.1 MD15G1245800.v1.1
pyrus_communis pycom02g10420 pycom15g21630
rosa_chinensis RchiOBHm_Chr2g0099471
rosa_laevigata RLG00000016885
rosa_multiflora Rmu_sc0002542.1_g000014
rosa_roxburghii Rroxscaffold_2G00143050
rosa_rugosa Rorug02G0079900
rosa_samantha Rh2AG129900 Rh2BG133000 Rh2CG133600 Rh2DG133900
rosa_wichuraiana Rw2G010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 238
AccII CGCG 1 cut(s) 407
AclWI GGATC 2 cut(s) 203, 368
AcsI RAATTY 1 cut(s) 461
AfaI GTAC 1 cut(s) 275
AflIII ACRYGT 2 cut(s) 178, 481
AgsI TTSAA 4 cut(s) 305, 312, 337, 386
AluBI AGCT 4 cut(s) 136, 152, 217, 322
AluI AGCT 4 cut(s) 136, 152, 217, 322
Alw21I GWGCWC 3 cut(s) 61, 219, 324
Alw26I GTCTC 2 cut(s) 408, 660
AlwI GGATC 2 cut(s) 203, 368
Ama87I CYCGRG 1 cut(s) 54
AoxI GGCC 1 cut(s) 34
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 1 cut(s) 461
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
AspS9I GGNCC 1 cut(s) 34
AsuC2I CCSGG 1 cut(s) 38
AsuII TTCGAA 1 cut(s) 426
AvaI CYCGRG 1 cut(s) 54
BanII GRGCYC 2 cut(s) 219, 324
Bbv12I GWGCWC 3 cut(s) 61, 219, 324
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 609
BclI TGATCA 1 cut(s) 355
BcnI CCSGG 1 cut(s) 38
BcoDI GTCTC 2 cut(s) 408, 660
BfaI CTAG 1 cut(s) 561
BfmI CTRYAG 2 cut(s) 153, 239
BglII AGATCT 1 cut(s) 298
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 38
BmeT110I CYCGRG 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 38
BmsI GCATC 2 cut(s) 288, 588
Bpu10I CCTNAGC 2 cut(s) 456, 513
Bpu14I TTCGAA 1 cut(s) 426
BpuMI CCSGG 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 660
BsaWI WCCGGW 2 cut(s) 66, 410
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bse1I ACTGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 620
BseMII CTCAG 4 cut(s) 200, 369, 447, 527
BseNI ACTGG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 139
BsgI GTGCAG 1 cut(s) 488
Bsh1236I CGCG 1 cut(s) 407
Bsh1285I CGRYCG 1 cut(s) 411
BshFI GGCC 1 cut(s) 36
BsiEI CGRYCG 1 cut(s) 411
BsiHKAI GWGCWC 3 cut(s) 61, 219, 324
BsiHKCI CYCGRG 1 cut(s) 54
BsiSI CCGG 3 cut(s) 37, 67, 411
BsmAI GTCTC 2 cut(s) 408, 660
BsnI GGCC 1 cut(s) 36
Bso31I GGTCTC 1 cut(s) 660
BsoBI CYCGRG 1 cut(s) 54
Bsp119I TTCGAA 1 cut(s) 426
Bsp1286I GDGCHC 3 cut(s) 61, 219, 324
Bsp143I GATC 5 cut(s) 45, 195, 298, 355, 373
Bsp68I TCGCGA 1 cut(s) 407
BspANI GGCC 1 cut(s) 36
BspCNI CTCAG 4 cut(s) 199, 370, 448, 526
BspFNI CGCG 1 cut(s) 407
BspMAI CTGCAG 1 cut(s) 157
BspPI GGATC 2 cut(s) 203, 368
BspT104I TTCGAA 1 cut(s) 426
BspTNI GGTCTC 1 cut(s) 660
BsrI ACTGG 1 cut(s) 27
BssMI GATC 5 cut(s) 45, 195, 298, 355, 373
BstBI TTCGAA 1 cut(s) 426
BstDEI CTNAG 5 cut(s) 186, 290, 378, 456, 513
BstF5I GGATG 1 cut(s) 620
BstFNI CGCG 1 cut(s) 407
BstKTI GATC 5 cut(s) 48, 198, 301, 358, 376
BstMAI GTCTC 2 cut(s) 408, 660
BstMBI GATC 5 cut(s) 45, 195, 298, 355, 373
BstMCI CGRYCG 1 cut(s) 411
BstMWI GCNNNNNNNGC 1 cut(s) 598
BstNSI RCATGY 2 cut(s) 182, 485
BstSCI CCNGG 1 cut(s) 36
BstSFI CTRYAG 2 cut(s) 153, 239
BstUI CGCG 1 cut(s) 407
BstV1I GCAGC 1 cut(s) 139
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BsuRI GGCC 1 cut(s) 36
BtgZI GCGATG 1 cut(s) 388
BtsCI GGATG 1 cut(s) 620
BtuMI TCGCGA 1 cut(s) 407
Cfr13I GGNCC 1 cut(s) 34
Csp6I GTAC 1 cut(s) 274
CviAII CATG 4 cut(s) 31, 179, 482, 542
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 5 cut(s) 186, 290, 378, 456, 513
DpnI GATC 5 cut(s) 47, 197, 300, 357, 375
DpnII GATC 5 cut(s) 45, 195, 298, 355, 373
Ecl136II GAGCTC 2 cut(s) 217, 322
Eco24I GRGCYC 2 cut(s) 219, 324
Eco31I GGTCTC 1 cut(s) 660
Eco53kI GAGCTC 2 cut(s) 217, 322
Eco88I CYCGRG 1 cut(s) 54
EcoICRI GAGCTC 2 cut(s) 217, 322
EcoT38I GRGCYC 2 cut(s) 219, 324
FaeI CATG 4 cut(s) 34, 182, 485, 545
FaiI YATR 9 cut(s) 32, 89, 124, 126, 180, 483, 543, 552, 605
FalI AAGNNNNNCTT 2 cut(s) 487, 519
FatI CATG 4 cut(s) 30, 178, 481, 541
FbaI TGATCA 1 cut(s) 355
FblI GTMKAC 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 627
FriOI GRGCYC 2 cut(s) 219, 324
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 561
GluI GCNGC 1 cut(s) 153
HaeIII GGCC 1 cut(s) 36
HapII CCGG 3 cut(s) 37, 67, 411
Hin1II CATG 4 cut(s) 34, 182, 485, 545
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HpaI GTTAAC 1 cut(s) 526
HpaII CCGG 3 cut(s) 37, 67, 411
Hpy166II GTNNAC 3 cut(s) 20, 239, 526
Hpy188I TCNGA 3 cut(s) 116, 360, 660
Hpy188III TCNNGA 4 cut(s) 302, 377, 406, 644
Hpy8I GTNNAC 3 cut(s) 20, 239, 526
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 5 cut(s) 331, 466, 513, 527, 641
HpyCH4V TGCA 4 cut(s) 155, 469, 494, 541
HpyF10VI GCNNNNNNNGC 1 cut(s) 598
HpyF3I CTNAG 5 cut(s) 186, 290, 378, 456, 513
Hsp92II CATG 4 cut(s) 34, 182, 485, 545
Ksp22I TGATCA 1 cut(s) 355
KspAI GTTAAC 1 cut(s) 526
Kzo9I GATC 5 cut(s) 45, 195, 298, 355, 373
LmnI GCTCC 2 cut(s) 149, 327
LpnPI CCDG 8 cut(s) 8, 50, 80, 141, 390, 424, 500, 629
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 2 cut(s) 288, 588
MaeI CTAG 1 cut(s) 561
MaeIII GTNAC 1 cut(s) 285
MalI GATC 5 cut(s) 47, 197, 300, 357, 375
MboI GATC 5 cut(s) 45, 195, 298, 355, 373
MboII GAAGA 6 cut(s) 233, 266, 308, 398, 401, 598
MflI RGATCY 1 cut(s) 298
MhlI GDGCHC 3 cut(s) 61, 219, 324
MluCI AATT 3 cut(s) 328, 461, 639
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 7 cut(s) 7, 186, 193, 445, 451, 510, 538
MseI TTAA 4 cut(s) 206, 266, 396, 525
MspI CCGG 3 cut(s) 37, 67, 411
MspR9I CCNGG 1 cut(s) 38
MvnI CGCG 1 cut(s) 407
MwoI GCNNNNNNNGC 1 cut(s) 598
NciI CCSGG 1 cut(s) 38
NdeII GATC 5 cut(s) 45, 195, 298, 355, 373
NlaIII CATG 4 cut(s) 34, 182, 485, 545
NmuCI GTSAC 1 cut(s) 285
NruI TCGCGA 1 cut(s) 407
NspI RCATGY 2 cut(s) 182, 485
NspV TTCGAA 1 cut(s) 426
PciI ACATGT 2 cut(s) 178, 481
PkrI GCNGC 1 cut(s) 154
PscI ACATGT 2 cut(s) 178, 481
Psp124BI GAGCTC 2 cut(s) 219, 324
PspPI GGNCC 1 cut(s) 34
PstI CTGCAG 1 cut(s) 157
PsuI RGATCY 1 cut(s) 298
RruI TCGCGA 1 cut(s) 407
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
SacI GAGCTC 2 cut(s) 219, 324
SaqAI TTAA 4 cut(s) 206, 266, 396, 525
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 5 cut(s) 45, 195, 298, 355, 373
Sau96I GGNCC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 3 cut(s) 61, 219, 324
SetI ASST 8 cut(s) 64, 138, 154, 204, 219, 324, 519, 652
SfaNI GCATC 2 cut(s) 288, 588
SfcI CTRYAG 2 cut(s) 153, 239
SfuI TTCGAA 1 cut(s) 426
Sse9I AATT 3 cut(s) 328, 461, 639
SspMI CTAG 1 cut(s) 561
SstI GAGCTC 2 cut(s) 219, 324
StyD4I CCNGG 1 cut(s) 36
TaqI TCGA 6 cut(s) 48, 191, 198, 213, 219, 426
TasI AATT 3 cut(s) 328, 461, 639
Tru1I TTAA 4 cut(s) 206, 266, 396, 525
Tru9I TTAA 4 cut(s) 206, 266, 396, 525
TseFI GTSAC 1 cut(s) 285
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 285
TspDTI ATGAA 2 cut(s) 17, 391
XapI RAATTY 1 cut(s) 461
XceI RCATGY 2 cut(s) 182, 485
XmiI GTMKAC 1 cut(s) 238
XspI CTAG 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.