Rorug02G0079900

WEB family protein At3g51220-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014992
Physical Location & Seq
Reverse (-)
6474299 .. 6474658
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0079900.1

Sequence Viewer

Length: 360 bp
ATGAAGTTGCTTCCGGCGCGCGCATCATCTGATATTCAGAAGGCAACTTCTTTGGCAACAAATATGGTCACAAAGTATGGAATGAGCTTGAAGATTGGGCTTGTTTTCCACAACTACGAAGAAAGTTTCAGTAGTACGTTGAGTGCCGAAACTAGATCTCTTATTGAGAATGAGGTGAAAGAACTGTTGGAAAAGGCTTACAAGAATGCAAAAAACATATTGACGACTCATCTTGAAGAGCTTCATGCACTAGCTAATGCATTACTCGAGCACGAGACTCTTTCTGGGAGTCAGATTAAGGAATTACTTGTTCAGGTGAACTCTCTTCCGTCTGCGCAAAACACCCATGAATCTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.17

Weight (kDa)

5.93

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M41 PF01434 8 - 102 3.1e-26 Peptidase family M41
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014992)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51220
fragaria_vesca FvH4_1g11870
malus_domestica MD02G1132800.v1.1 MD15G1245800.v1.1
pyrus_communis pycom02g10420 pycom15g21630
rosa_chinensis RchiOBHm_Chr2g0099471
rosa_laevigata RLG00000016885
rosa_multiflora Rmu_sc0002542.1_g000014
rosa_roxburghii Rroxscaffold_2G00143050
rosa_rugosa Rorug02G0079900
rosa_samantha Rh2AG129900 Rh2BG133000 Rh2CG133600 Rh2DG133900
rosa_wichuraiana Rw2G010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 336
AccII CGCG 2 cut(s) 19, 21
AfaI GTAC 1 cut(s) 136
AgsI TTSAA 2 cut(s) 91, 236
AjuI GAANNNNNNNTTGG 2 cut(s) 170, 202
AluBI AGCT 3 cut(s) 87, 241, 254
AluI AGCT 3 cut(s) 87, 241, 254
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 1 cut(s) 269
Ama87I CYCGRG 1 cut(s) 266
Asp700I GAANNNNTTC 1 cut(s) 240
AspLEI GCGC 4 cut(s) 19, 21, 23, 337
AsuHPI GGTGA 2 cut(s) 187, 328
AvaI CYCGRG 1 cut(s) 266
BauI CACGAG 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 269
BfaI CTAG 3 cut(s) 153, 251, 358
BglII AGATCT 1 cut(s) 155
BmeT110I CYCGRG 1 cut(s) 266
BmsI GCATC 1 cut(s) 32
BsePI GCGCGC 2 cut(s) 17, 19
Bsh1236I CGCG 2 cut(s) 19, 21
BsiHKAI GWGCWC 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 269
BsmI GAATGC 1 cut(s) 211
BsoBI CYCGRG 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 1 cut(s) 155
BspFNI CGCG 2 cut(s) 19, 21
BspQI GCTCTTC 1 cut(s) 231
BssHII GCGCGC 2 cut(s) 17, 19
BssMI GATC 1 cut(s) 155
BssSI CACGAG 1 cut(s) 272
Bst2BI CACGAG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 186
Bst6I CTCTTC 2 cut(s) 231, 330
BstC8I GCNNGC 2 cut(s) 19, 21
BstFNI CGCG 2 cut(s) 19, 21
BstHHI GCGC 4 cut(s) 19, 21, 23, 337
BstKTI GATC 1 cut(s) 158
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 1 cut(s) 155
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstUI CGCG 2 cut(s) 19, 21
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
Cac8I GCNNGC 2 cut(s) 19, 21
CfoI GCGC 4 cut(s) 19, 21, 23, 337
Csp6I GTAC 1 cut(s) 135
CviAII CATG 2 cut(s) 245, 347
CviJI RGCY 5 cut(s) 87, 100, 197, 241, 254
CviKI_1 RGCY 5 cut(s) 87, 100, 197, 241, 254
CviQI GTAC 1 cut(s) 135
DpnI GATC 1 cut(s) 157
DpnII GATC 1 cut(s) 155
Eam1104I CTCTTC 2 cut(s) 231, 330
EarI CTCTTC 2 cut(s) 231, 330
Eco88I CYCGRG 1 cut(s) 266
EcoT22I ATGCAT 1 cut(s) 262
FaeI CATG 2 cut(s) 248, 350
FaiI YATR 5 cut(s) 65, 78, 218, 246, 348
FatI CATG 2 cut(s) 244, 346
FspBI CTAG 3 cut(s) 153, 251, 358
FspI TGCGCA 1 cut(s) 336
GlaI GCGC 4 cut(s) 18, 20, 22, 336
HapII CCGG 1 cut(s) 14
HhaI GCGC 4 cut(s) 19, 21, 23, 337
Hin1II CATG 2 cut(s) 248, 350
Hin6I GCGC 4 cut(s) 17, 19, 21, 335
HinP1I GCGC 4 cut(s) 17, 19, 21, 335
HinfI GANTC 4 cut(s) 226, 277, 289, 350
HpaII CCGG 1 cut(s) 14
HphI GGTGA 2 cut(s) 187, 328
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 3 cut(s) 31, 39, 294
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 1 cut(s) 319
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 3 cut(s) 209, 248, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpySE526I ACGT 1 cut(s) 137
Hsp92II CATG 2 cut(s) 248, 350
HspAI GCGC 4 cut(s) 17, 19, 21, 335
Kzo9I GATC 1 cut(s) 155
LguI GCTCTTC 1 cut(s) 231
LpnPI CCDG 3 cut(s) 27, 270, 299
LweI GCATC 1 cut(s) 32
MaeI CTAG 3 cut(s) 153, 251, 358
MaeII ACGT 1 cut(s) 137
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 157
MboI GATC 1 cut(s) 155
MboII GAAGA 4 cut(s) 103, 131, 248, 317
MflI RGATCY 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 1 cut(s) 302
MlyI GAGTC 3 cut(s) 220, 271, 298
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 1 cut(s) 166
Mph1103I ATGCAT 1 cut(s) 262
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 1 cut(s) 297
MspI CCGG 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 211
MvnI CGCG 2 cut(s) 19, 21
MwoI GCNNNNNNNGC 1 cut(s) 16
NdeII GATC 1 cut(s) 155
NlaIII CATG 2 cut(s) 248, 350
NmuCI GTSAC 1 cut(s) 67
NsbI TGCGCA 1 cut(s) 336
NsiI ATGCAT 1 cut(s) 262
PaeR7I CTCGAG 1 cut(s) 266
PauI GCGCGC 2 cut(s) 17, 19
PciSI GCTCTTC 1 cut(s) 231
PctI GAATGC 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 1 cut(s) 350
PleI GAGTC 3 cut(s) 220, 271, 297
PpsI GAGTC 3 cut(s) 220, 271, 297
PspXI VCTCGAGB 1 cut(s) 266
PsuI RGATCY 1 cut(s) 155
PteI GCGCGC 2 cut(s) 17, 19
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 297
Sau3AI GATC 1 cut(s) 155
SchI GAGTC 3 cut(s) 220, 271, 298
SduI GDGCHC 1 cut(s) 273
SetI ASST 6 cut(s) 89, 140, 177, 243, 256, 318
SfaNI GCATC 1 cut(s) 32
Sfr274I CTCGAG 1 cut(s) 266
SlaI CTCGAG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 1 cut(s) 302
SspMI CTAG 3 cut(s) 153, 251, 358
TaaI ACNGT 1 cut(s) 186
TaiI ACGT 1 cut(s) 140
TaqI TCGA 1 cut(s) 267
TasI AATT 1 cut(s) 302
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TseFI GTSAC 1 cut(s) 67
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 2 cut(s) 17, 233
TspGWI ACGGA 1 cut(s) 318
XhoI CTCGAG 1 cut(s) 266
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 3 cut(s) 153, 251, 358
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.