Rroxscaffold_2G00143050

WEB family protein At3g51220-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014992
Physical Location & Seq
Reverse (-)
81067151 .. 81068802
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00143050.1

Sequence Viewer

Length: 660 bp
ATGAACGCCGAAGAGGGCAAGCTGGTGGTCCGGGGGCGTGCCGAGATTGACACTAGGGCGCCTTTCAGGTCTGTTAAGGAAGCAGTGATGTTGTTTGGAGAAAGAGTTTTAGTTGGGGAGATCTATGGCAACAAGCTCAAAGAGATTGGAGCTGCAGGAGCAAATGAGAATGGACGCACTCAATCCCAAGTTGAAATCTTAACAGCTGAGCTTGAAGAAACAAAGCAAAATCTGGAGAAAGCCAGAGAAGAAAACAAGGCAATGGCATACTGCATAAAGTCCCTCAGAGATGATCTTGACCATGCAAGGAGAGAGCTGTATAACTACTTGAAAGCAAGAGAGCAGTTTCAAAAGCAGTCAGTCGAATCTCATCATCAGGATCCCGAGATCGAAGACTTTAAATTCATCGAAAATGCAACGGATCAGTTTGAAACTAAGAGGGAATTGAACCAAAATGAAGAGGAGTTTCAGAAGAAAAGATATGTGAAATTTGCAAGTCCTCCTTCACTTGCTCAAGTCATTGTTAACAAAGAGGAAATGCAAGGAGAGGGGCTGAGGGACCCATCTTCTGTCAAGAAGATGAACAAGAAGAAGCCTCTAATAGGGTGGCTTTTCAACAAAAACAAGGCCCTTCAAGGAGGGTCTCCAAGATCAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

25.12

Weight (kDa)

7.76

Isoelectric Point (pI)

59.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014992)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51220
fragaria_vesca FvH4_1g11870
malus_domestica MD02G1132800.v1.1 MD15G1245800.v1.1
pyrus_communis pycom02g10420 pycom15g21630
rosa_chinensis RchiOBHm_Chr2g0099471
rosa_laevigata RLG00000016885
rosa_multiflora Rmu_sc0002542.1_g000014
rosa_roxburghii Rroxscaffold_2G00143050
rosa_rugosa Rorug02G0079900
rosa_samantha Rh2AG129900 Rh2BG133000 Rh2CG133600 Rh2DG133900
rosa_wichuraiana Rw2G010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 58
AclWI GGATC 3 cut(s) 374, 387, 429
AcsI RAATTY 2 cut(s) 401, 488
AcyI GRCGYC 1 cut(s) 59
AfiI CCNNNNNNNGG 2 cut(s) 602, 653
AgsI TTSAA 8 cut(s) 194, 215, 331, 350, 431, 448, 616, 635
AluBI AGCT 6 cut(s) 22, 136, 152, 206, 211, 316
AluI AGCT 6 cut(s) 22, 136, 152, 206, 211, 316
Alw26I GTCTC 1 cut(s) 648
AlwI GGATC 3 cut(s) 374, 387, 429
Ama87I CYCGRG 1 cut(s) 383
AoxI GGCC 1 cut(s) 627
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 2 cut(s) 401, 488
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 3 cut(s) 28, 559, 628
AsuC2I CCSGG 1 cut(s) 32
AvaI CYCGRG 1 cut(s) 383
AvaII GGWCC 2 cut(s) 28, 559
BamHI GGATCC 1 cut(s) 379
BanI GGYRCC 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 399
BbvCI CCTCAGC 1 cut(s) 554
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 571
BcnI CCSGG 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 648
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 62
BglII AGATCT 1 cut(s) 120
BisI GCNGC 1 cut(s) 153
BlpI GCTNAGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 2 cut(s) 28, 559
BmeT110I CYCGRG 1 cut(s) 383
BmgT120I GGNCC 3 cut(s) 28, 559, 628
BmiI GGNNCC 4 cut(s) 60, 381, 560, 561
BmrFI CCNGG 1 cut(s) 32
BpiI GAAGAC 1 cut(s) 399
BpmI CTGGAG 1 cut(s) 254
Bpu10I CCTNAGC 1 cut(s) 554
Bpu1102I GCTNAGC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 498
BpuMI CCSGG 1 cut(s) 32
BsaHI GRCGYC 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 648
BsaJI CCNNGG 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 90, 120
Bsc4I CCNNNNNNNGG 2 cut(s) 602, 653
Bse3DI GCAATG 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 31
BseLI CCNNNNNNNGG 2 cut(s) 602, 653
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 3 cut(s) 198, 298, 545
BseRI GAGGAG 1 cut(s) 476
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 1 cut(s) 629
BshNI GGYRCC 1 cut(s) 58
BsiHKCI CYCGRG 1 cut(s) 383
BsiSI CCGG 1 cut(s) 31
BslFI GGGAC 2 cut(s) 265, 572
BslI CCNNNNNNNGG 2 cut(s) 602, 653
BsmAI GTCTC 1 cut(s) 648
BsmFI GGGAC 2 cut(s) 265, 572
BsnI GGCC 1 cut(s) 629
Bso31I GGTCTC 1 cut(s) 648
BsoBI CYCGRG 1 cut(s) 383
Bsp143I GATC 6 cut(s) 120, 292, 379, 387, 421, 650
Bsp1720I GCTNAGC 1 cut(s) 207
BspANI GGCC 1 cut(s) 629
BspCNI CTCAG 3 cut(s) 199, 297, 546
BspLI GGNNCC 4 cut(s) 60, 381, 560, 561
BspMAI CTGCAG 1 cut(s) 157
BspPI GGATC 3 cut(s) 374, 387, 429
BspT107I GGYRCC 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 648
BsrDI GCAATG 1 cut(s) 267
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 6 cut(s) 120, 292, 379, 387, 421, 650
BssNI GRCGYC 1 cut(s) 59
Bst6I CTCTTC 2 cut(s) 6, 453
BstACI GRCGYC 1 cut(s) 59
BstC8I GCNNGC 2 cut(s) 20, 39
BstDEI CTNAG 4 cut(s) 207, 284, 435, 554
BstENI CCTNNNNNAGG 1 cut(s) 600
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 6 cut(s) 123, 295, 382, 390, 424, 653
BstMAI GTCTC 1 cut(s) 648
BstMBI GATC 6 cut(s) 120, 292, 379, 387, 421, 650
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 399
BstX2I RGATCY 2 cut(s) 120, 379
BstYI RGATCY 2 cut(s) 120, 379
BsuRI GGCC 1 cut(s) 629
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 2 cut(s) 20, 39
CfoI GCGC 1 cut(s) 61
Cfr13I GGNCC 3 cut(s) 28, 559, 628
CseI GACGC 1 cut(s) 183
CviAII CATG 1 cut(s) 302
DdeI CTNAG 4 cut(s) 207, 284, 435, 554
DinI GGCGCC 1 cut(s) 60
DpnI GATC 6 cut(s) 122, 294, 381, 389, 423, 652
DpnII GATC 6 cut(s) 120, 292, 379, 387, 421, 650
DraI TTTAAA 1 cut(s) 400
Eam1104I CTCTTC 2 cut(s) 6, 453
EarI CTCTTC 2 cut(s) 6, 453
Eco31I GGTCTC 1 cut(s) 648
Eco47I GGWCC 2 cut(s) 28, 559
Eco88I CYCGRG 1 cut(s) 383
EcoNI CCTNNNNNAGG 1 cut(s) 600
EcoO109I RGGNCCY 2 cut(s) 559, 628
EgeI GGCGCC 1 cut(s) 60
EheI GGCGCC 1 cut(s) 60
FaeI CATG 1 cut(s) 305
FaiI YATR 6 cut(s) 126, 268, 275, 303, 321, 483
FalI AAGNNNNNCTT 2 cut(s) 487, 519
FaqI GGGAC 2 cut(s) 265, 572
FatI CATG 1 cut(s) 301
Fnu4HI GCNGC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 1 cut(s) 54
GlaI GCGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 254
HaeII RGCGCY 1 cut(s) 62
HaeIII GGCC 1 cut(s) 629
HapII CCGG 1 cut(s) 31
HgaI GACGC 1 cut(s) 183
HhaI GCGC 1 cut(s) 61
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 1 cut(s) 305
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HinfI GANTC 1 cut(s) 365
HpaI GTTAAC 1 cut(s) 526
HpaII CCGG 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 526
Hpy188I TCNGA 2 cut(s) 287, 471
Hpy188III TCNNGA 5 cut(s) 233, 296, 377, 383, 574
Hpy8I GTNNAC 1 cut(s) 526
HpyAV CCTTC 2 cut(s) 513, 641
HpyCH4V TGCA 6 cut(s) 155, 273, 305, 416, 494, 541
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 4 cut(s) 207, 284, 435, 554
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 1 cut(s) 305
HspAI GCGC 1 cut(s) 59
KasI GGCGCC 1 cut(s) 58
KflI GGGWCCC 1 cut(s) 559
KspAI GTTAAC 1 cut(s) 526
Kzo9I GATC 6 cut(s) 120, 292, 379, 387, 421, 650
LmnI GCTCC 2 cut(s) 149, 158
LpnPI CCDG 8 cut(s) 8, 44, 52, 141, 218, 256, 362, 639
Lsp1109I GCAGC 1 cut(s) 139
MaeI CTAG 1 cut(s) 54
MalI GATC 6 cut(s) 122, 294, 381, 389, 423, 652
MboI GATC 6 cut(s) 120, 292, 379, 387, 421, 650
MboII GAAGA 9 cut(s) 23, 227, 260, 404, 470, 484, 558, 589, 601
MflI RGATCY 2 cut(s) 120, 379
MluCI AATT 3 cut(s) 401, 443, 488
Mly113I GGCGCC 1 cut(s) 59
MseI TTAA 4 cut(s) 75, 200, 399, 525
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 1 cut(s) 31
MspR9I CCNGG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 158
NarI GGCGCC 1 cut(s) 59
NciI CCSGG 1 cut(s) 32
NdeII GATC 6 cut(s) 120, 292, 379, 387, 421, 650
NlaIII CATG 1 cut(s) 305
NlaIV GGNNCC 4 cut(s) 60, 381, 560, 561
NmeAIII GCCGAG 1 cut(s) 67
PfeI GAWTC 1 cut(s) 365
PkrI GCNGC 1 cut(s) 154
PluTI GGCGCC 1 cut(s) 62
PpuMI RGGWCCY 1 cut(s) 559
Psp5II RGGWCCY 1 cut(s) 559
PspN4I GGNNCC 4 cut(s) 60, 381, 560, 561
PspPI GGNCC 3 cut(s) 28, 559, 628
PspPPI RGGWCCY 1 cut(s) 559
PstI CTGCAG 1 cut(s) 157
PsuI RGATCY 2 cut(s) 120, 379
PvuII CAGCTG 1 cut(s) 206
SaqAI TTAA 4 cut(s) 75, 200, 399, 525
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 6 cut(s) 120, 292, 379, 387, 421, 650
Sau96I GGNCC 3 cut(s) 28, 559, 628
ScrFI CCNGG 1 cut(s) 32
SetI ASST 7 cut(s) 24, 71, 138, 154, 208, 213, 318
SfcI CTRYAG 1 cut(s) 153
SfoI GGCGCC 1 cut(s) 60
SinI GGWCC 2 cut(s) 28, 559
SmlI CTYRAG 1 cut(s) 513
SmoI CTYRAG 1 cut(s) 513
Sse9I AATT 3 cut(s) 401, 443, 488
SspDI GGCGCC 1 cut(s) 58
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 30
TaqI TCGA 3 cut(s) 363, 390, 408
TasI AATT 3 cut(s) 401, 443, 488
TfiI GAWTC 1 cut(s) 365
Tru1I TTAA 4 cut(s) 75, 200, 399, 525
Tru9I TTAA 4 cut(s) 75, 200, 399, 525
TscAI CASTG 1 cut(s) 90
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 4 cut(s) 17, 394, 471, 596
TspGWI ACGGA 1 cut(s) 434
TspRI CASTG 1 cut(s) 90
VpaK11BI GGWCC 2 cut(s) 28, 559
XagI CCTNNNNNAGG 1 cut(s) 600
XapI RAATTY 2 cut(s) 401, 488
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.