FvH4_1g11940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016624
Physical Location & Seq
Forward (+)
6520325 .. 6520855
531 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11940.t1

Sequence Viewer

Length: 531 bp
ATGGAAGCCAAACTCCTCCATTTCCTCGCTTCAAAACCGGTAGCACCACCCAACCTCGCCCTCGCCAAACCTACATGTAACCACATCATCTTACCCACCCGGCCACAACGTCTCCGAGTCACTCCTATCTGCAGTAGCAGTGATGGTGGCAGCAGTACTAGCCCTGATACCACTGACAGCAACAGCGCACCAACACCGACAGACACCGTGGGAATACGGTTCAAGAAGAGGTCTAGAAAGAAGGCGAAGCAGCAGAGGGAGCAGAGGGAGGGTGAGGGCAGTGATGAACGGTTCATGAAGGCTGAAGCTGCTGTTCCGAAGAAGTGGGAGGAAATGAGCCTTGGGGAACAGGCCTTGGAGCTTTACCTGGGGGAGAAGGGTTTGCTGTATTGGATAAACAAGTTTGCTTATGCTTCAATCTTCATTGTTATCGGAGCTTGGATCCTCTTCAGATTCGTCGGGCCAGCGCTTAACCTTTACCAGTTGGACTCAGCTCCTCTTTCTCCTTCTGCCATCCTCAAGGGTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2839

Protein Analysis

177

Amino Acids

19.4

Weight (kDa)

9.52

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016624)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17972
fragaria_vesca FvH4_1g11940
malus_domestica MD02G1133200.v1.1
prunus_persica Prupe.7G167500_v2.0.a1
pyrus_communis pycom02g10470
rosa_laevigata RLG00000016890
rosa_multiflora Rmu_sc0002542.1_g000019
rosa_roxburghii Rroxscaffold_2G00142990
rosa_rugosa Rorug02G0080500
rosa_samantha Rh2AG130400 Rh2BG133500 Rh2CG134000 Rh2DG134300
rosa_wichuraiana Rw2G010060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 436, 449
AcoI YGGCCR 1 cut(s) 101
AcuI CTGAAG 2 cut(s) 324, 433
AfaI GTAC 1 cut(s) 157
AfeI AGCGCT 1 cut(s) 468
AflIII ACRYGT 1 cut(s) 74
AgeI ACCGGT 1 cut(s) 37
AgsI TTSAA 3 cut(s) 33, 223, 417
AjnI CCWGG 1 cut(s) 366
AjuI GAANNNNNNNTTGG 2 cut(s) 324, 356
AluBI AGCT 4 cut(s) 308, 361, 437, 494
AluI AGCT 4 cut(s) 308, 361, 437, 494
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 2 cut(s) 436, 449
Aor51HI AGCGCT 1 cut(s) 468
AoxI GGCC 3 cut(s) 101, 351, 461
ApeKI GCWGC 3 cut(s) 150, 250, 308
AsiGI ACCGGT 1 cut(s) 37
AspLEI GCGC 2 cut(s) 188, 469
AspS9I GGNCC 1 cut(s) 461
AsuC2I CCSGG 1 cut(s) 100
AsuHPI GGTGA 1 cut(s) 284
BamHI GGATCC 1 cut(s) 441
BbvI GCAGC 3 cut(s) 162, 262, 295
BccI CCATC 2 cut(s) 137, 521
BciT130I CCWGG 1 cut(s) 368
BcnI CCSGG 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 2 cut(s) 159, 234
BfmI CTRYAG 1 cut(s) 130
BfoI RGCGCY 1 cut(s) 470
BisI GCNGC 3 cut(s) 151, 251, 309
BlsI GCNGC 3 cut(s) 152, 252, 310
BmcAI AGTACT 1 cut(s) 157
Bme1390I CCNGG 2 cut(s) 100, 368
BmgT120I GGNCC 1 cut(s) 461
BmiI GGNNCC 2 cut(s) 443, 526
BmrFI CCNGG 2 cut(s) 100, 368
BpuEI CTTGAG 1 cut(s) 503
BpuMI CCSGG 1 cut(s) 100
BsaJI CCNNGG 4 cut(s) 207, 340, 354, 367
BsaWI WCCGGW 1 cut(s) 37
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 481
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 4 cut(s) 207, 340, 354, 367
BseGI GGATG 1 cut(s) 513
BseMII CTCAG 1 cut(s) 504
BseNI ACTGG 1 cut(s) 481
BseRI GAGGAG 2 cut(s) 5, 486
BseXI GCAGC 3 cut(s) 162, 262, 295
BshFI GGCC 3 cut(s) 103, 353, 463
BshTI ACCGGT 1 cut(s) 37
BsiSI CCGG 2 cut(s) 38, 100
BsmAI GTCTC 1 cut(s) 116
BsmBI CGTCTC 1 cut(s) 116
BsnI GGCC 3 cut(s) 103, 353, 463
Bsp143I GATC 1 cut(s) 441
BspANI GGCC 3 cut(s) 103, 353, 463
BspCNI CTCAG 1 cut(s) 503
BspHI TCATGA 1 cut(s) 294
BspLI GGNNCC 2 cut(s) 443, 526
BspMAI CTGCAG 1 cut(s) 134
BspPI GGATC 2 cut(s) 436, 449
BsrFI RCCGGY 1 cut(s) 37
BsrI ACTGG 1 cut(s) 481
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 4 cut(s) 207, 340, 354, 367
BssMI GATC 1 cut(s) 441
BssT1I CCWWGG 2 cut(s) 340, 354
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 3 cut(s) 208, 219, 291
Bst6I CTCTTC 2 cut(s) 221, 452
BstC8I GCNNGC 1 cut(s) 465
BstDEI CTNAG 1 cut(s) 490
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 1 cut(s) 513
BstH2I RGCGCY 1 cut(s) 470
BstHHI GCGC 2 cut(s) 188, 469
BstKTI GATC 1 cut(s) 444
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 1 cut(s) 441
BstMWI GCNNNNNNNGC 3 cut(s) 159, 259, 308
BstNI CCWGG 1 cut(s) 368
BstNSI RCATGY 1 cut(s) 78
BstSCI CCNGG 2 cut(s) 98, 366
BstSFI CTRYAG 1 cut(s) 130
BstV1I GCAGC 3 cut(s) 162, 262, 295
BstX2I RGATCY 1 cut(s) 441
BstYI RGATCY 1 cut(s) 441
BsuRI GGCC 3 cut(s) 103, 353, 463
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 513
BtsI GCAGTG 2 cut(s) 145, 286
BtsIMutI CAGTG 3 cut(s) 145, 171, 286
Cac8I GCNNGC 1 cut(s) 465
CciI TCATGA 1 cut(s) 294
CfoI GCGC 2 cut(s) 188, 469
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 461
Csp6I GTAC 1 cut(s) 156
CspAI ACCGGT 1 cut(s) 37
CviAII CATG 2 cut(s) 75, 295
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 1 cut(s) 490
DpnI GATC 1 cut(s) 443
DpnII GATC 1 cut(s) 441
EaeI YGGCCR 1 cut(s) 101
Eam1104I CTCTTC 2 cut(s) 221, 452
EarI CTCTTC 2 cut(s) 221, 452
Eco130I CCWWGG 2 cut(s) 340, 354
Eco147I AGGCCT 1 cut(s) 353
Eco47III AGCGCT 1 cut(s) 468
Eco57I CTGAAG 2 cut(s) 324, 433
EcoRII CCWGG 1 cut(s) 366
EcoT14I CCWWGG 2 cut(s) 340, 354
ErhI CCWWGG 2 cut(s) 340, 354
Esp3I CGTCTC 1 cut(s) 116
FaeI CATG 2 cut(s) 78, 298
FaiI YATR 3 cut(s) 76, 296, 411
FatI CATG 2 cut(s) 74, 294
Fnu4HI GCNGC 3 cut(s) 151, 251, 309
FokI GGATG 1 cut(s) 500
Fsp4HI GCNGC 3 cut(s) 151, 251, 309
FspBI CTAG 2 cut(s) 159, 234
GlaI GCGC 2 cut(s) 187, 468
GluI GCNGC 3 cut(s) 151, 251, 309
HaeII RGCGCY 1 cut(s) 470
HaeIII GGCC 3 cut(s) 103, 353, 463
HapII CCGG 2 cut(s) 38, 100
HhaI GCGC 2 cut(s) 188, 469
Hin1II CATG 2 cut(s) 78, 298
Hin6I GCGC 2 cut(s) 186, 467
HinP1I GCGC 2 cut(s) 186, 467
HinfI GANTC 3 cut(s) 117, 453, 488
HpaII CCGG 2 cut(s) 38, 100
HphI GGTGA 1 cut(s) 284
Hpy188I TCNGA 4 cut(s) 116, 318, 434, 452
Hpy188III TCNNGA 4 cut(s) 223, 234, 295, 528
Hpy99I CGWCG 1 cut(s) 461
HpyAV CCTTC 4 cut(s) 235, 292, 370, 516
HpyCH4III ACNGT 3 cut(s) 208, 219, 291
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 3 cut(s) 159, 259, 308
HpyF3I CTNAG 1 cut(s) 490
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 2 cut(s) 78, 298
HspAI GCGC 2 cut(s) 186, 467
Kzo9I GATC 1 cut(s) 441
LmnI GCTCC 4 cut(s) 259, 358, 434, 499
LpnPI CCDG 8 cut(s) 51, 113, 177, 335, 353, 380, 477, 494
Lsp1109I GCAGC 3 cut(s) 162, 262, 295
MaeI CTAG 2 cut(s) 159, 234
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 2 cut(s) 77, 118
MalI GATC 1 cut(s) 443
MboI GATC 1 cut(s) 441
MboII GAAGA 4 cut(s) 238, 331, 412, 439
MflI RGATCY 1 cut(s) 441
MlyI GAGTC 2 cut(s) 126, 482
MmeI TCCRAC 1 cut(s) 465
MseI TTAA 1 cut(s) 471
MspI CCGG 2 cut(s) 38, 100
MspR9I CCNGG 2 cut(s) 100, 368
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 3 cut(s) 159, 259, 308
NciI CCSGG 1 cut(s) 100
NdeII GATC 1 cut(s) 441
NlaIII CATG 2 cut(s) 78, 298
NlaIV GGNNCC 2 cut(s) 443, 526
NmuCI GTSAC 1 cut(s) 118
NspI RCATGY 1 cut(s) 78
PagI TCATGA 1 cut(s) 294
PceI AGGCCT 1 cut(s) 353
PciI ACATGT 1 cut(s) 74
PfeI GAWTC 1 cut(s) 453
PinAI ACCGGT 1 cut(s) 37
PkrI GCNGC 3 cut(s) 152, 252, 310
PleI GAGTC 2 cut(s) 125, 482
PpsI GAGTC 2 cut(s) 125, 482
PscI ACATGT 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 2 cut(s) 443, 526
PspPI GGNCC 1 cut(s) 461
PstI CTGCAG 1 cut(s) 134
PsuI RGATCY 1 cut(s) 441
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 3 cut(s) 151, 251, 309
Sau3AI GATC 1 cut(s) 441
Sau96I GGNCC 1 cut(s) 461
ScaI AGTACT 1 cut(s) 157
SchI GAGTC 2 cut(s) 126, 482
ScrFI CCNGG 2 cut(s) 100, 368
SfcI CTRYAG 1 cut(s) 130
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
SseBI AGGCCT 1 cut(s) 353
SspMI CTAG 2 cut(s) 159, 234
StuI AGGCCT 1 cut(s) 353
StyD4I CCNGG 2 cut(s) 98, 366
StyI CCWWGG 2 cut(s) 340, 354
TaaI ACNGT 3 cut(s) 208, 219, 291
TaiI ACGT 1 cut(s) 112
TatI WGTACW 1 cut(s) 155
TfiI GAWTC 1 cut(s) 453
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TscAI CASTG 3 cut(s) 145, 178, 286
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 3 cut(s) 150, 250, 308
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 4 cut(s) 283, 300, 311, 412
TspRI CASTG 3 cut(s) 145, 178, 286
XbaI TCTAGA 1 cut(s) 233
XceI RCATGY 1 cut(s) 78
XspI CTAG 2 cut(s) 159, 234
ZrmI AGTACT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.