Rmu_sc0002542.1_g000019

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002542.1
OG0016624
Physical Location & Seq
Forward (+)
97799 .. 98524
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002542.1_g000019.1.cds

Sequence Viewer

Length: 726 bp
atggaagctaaactcctccatctccttgcttcaaaaccagttgcaccacccaacctcgccctcgccaaacctacctgtaacttcccacccacccggccgcaccatctcagaatcactcatatctgcagtagcagtgatggtggtagcagtactagccccgacaccactgacagcaacagcgcgccaacgccgacagacaccgtgggaatacggttcaagaagaggtctagaaagaaggcgaagcagcagagagagcagagggacggtgaaggcagtcacatcttcccacccacccggccgcaccatctcagaatcactcatatctgcagtagcagtgatggtggtagcagtactagccccgacactactgacagcaacagcgcgccaacgccgatagacaccgtgggaatacggttcaagaagaggtctagaaagaaggcgaagcagcagagagagcagagggacggtgaaggcagtggtgaacggttcatcaaggctgaagctgatgttccgaagaagtgggaggaaatgagcctgggggaacaggccttggagctttacttgggggagaagggtttgctgtattggataaacaagtttgcttatgcttccatcttcattgttattggagcttggattctcttcaggttcgtcgggccagcgcttaacctttaccagttggactcggctcctctttctccttctgccatcctcaagggttcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2839

Protein Analysis

241

Amino Acids

26.51

Weight (kDa)

9.68

Isoelectric Point (pI)

51.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016624)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17972
fragaria_vesca FvH4_1g11940
malus_domestica MD02G1133200.v1.1
prunus_persica Prupe.7G167500_v2.0.a1
pyrus_communis pycom02g10470
rosa_laevigata RLG00000016890
rosa_multiflora Rmu_sc0002542.1_g000019
rosa_roxburghii Rroxscaffold_2G00142990
rosa_rugosa Rorug02G0080500
rosa_samantha Rh2AG130400 Rh2BG133500 Rh2CG134000 Rh2DG134300
rosa_wichuraiana Rw2G010060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 182, 383
AciI CCGC 2 cut(s) 98, 299
AcoI YGGCCR 2 cut(s) 95, 296
AcuI CTGAAG 2 cut(s) 519, 628
AfaI GTAC 2 cut(s) 151, 352
AfeI AGCGCT 1 cut(s) 663
AgsI TTSAA 3 cut(s) 33, 217, 418
AjnI CCWGG 1 cut(s) 534
AluBI AGCT 4 cut(s) 8, 503, 556, 632
AluI AGCT 4 cut(s) 8, 503, 556, 632
Aor51HI AGCGCT 1 cut(s) 663
AoxI GGCC 4 cut(s) 95, 296, 546, 656
ApeKI GCWGC 2 cut(s) 244, 445
AspLEI GCGC 5 cut(s) 182, 184, 383, 385, 664
AspS9I GGNCC 1 cut(s) 656
AsuC2I CCSGG 2 cut(s) 94, 295
AsuHPI GGTGA 3 cut(s) 278, 479, 491
BbvI GCAGC 2 cut(s) 256, 457
BccI CCATC 7 cut(s) 27, 111, 131, 312, 332, 620, 716
BciT130I CCWGG 1 cut(s) 536
BcnI CCSGG 2 cut(s) 94, 295
BfaI CTAG 4 cut(s) 153, 228, 354, 429
BfmI CTRYAG 2 cut(s) 124, 325
BfoI RGCGCY 1 cut(s) 665
BisI GCNGC 4 cut(s) 98, 245, 299, 446
BlsI GCNGC 4 cut(s) 99, 246, 300, 447
BmcAI AGTACT 2 cut(s) 151, 352
Bme1390I CCNGG 3 cut(s) 94, 295, 536
BmgT120I GGNCC 1 cut(s) 656
BmiI GGNNCC 2 cut(s) 690, 721
BmrFI CCNGG 3 cut(s) 94, 295, 536
BpuEI CTTGAG 1 cut(s) 698
BpuMI CCSGG 2 cut(s) 94, 295
BsaJI CCNNGG 4 cut(s) 201, 402, 535, 549
Bse1I ACTGG 2 cut(s) 38, 676
BseBI CCWGG 1 cut(s) 536
BseDI CCNNGG 4 cut(s) 201, 402, 535, 549
BseGI GGATG 1 cut(s) 708
BseMII CTCAG 2 cut(s) 121, 322
BseNI ACTGG 2 cut(s) 38, 676
BsePI GCGCGC 2 cut(s) 180, 381
BseRI GAGGAG 2 cut(s) 5, 681
BseX3I CGGCCG 2 cut(s) 95, 296
BseXI GCAGC 2 cut(s) 256, 457
Bsh1236I CGCG 2 cut(s) 182, 383
Bsh1285I CGRYCG 2 cut(s) 98, 299
BshFI GGCC 4 cut(s) 97, 298, 548, 658
BsiEI CGRYCG 2 cut(s) 98, 299
BsiSI CCGG 2 cut(s) 94, 295
BslFI GGGAC 2 cut(s) 275, 476
BsmFI GGGAC 2 cut(s) 275, 476
BsnI GGCC 4 cut(s) 97, 298, 548, 658
BspACI CCGC 2 cut(s) 98, 299
BspANI GGCC 4 cut(s) 97, 298, 548, 658
BspCNI CTCAG 2 cut(s) 120, 321
BspFNI CGCG 2 cut(s) 182, 383
BspLI GGNNCC 2 cut(s) 690, 721
BspMAI CTGCAG 2 cut(s) 128, 329
BsrI ACTGG 2 cut(s) 38, 676
BssECI CCNNGG 4 cut(s) 201, 402, 535, 549
BssHII GCGCGC 2 cut(s) 180, 381
BssT1I CCWWGG 1 cut(s) 549
Bst2UI CCWGG 1 cut(s) 536
Bst4CI ACNGT 7 cut(s) 202, 213, 266, 403, 414, 467, 486
Bst6I CTCTTC 3 cut(s) 215, 416, 647
BstC8I GCNNGC 3 cut(s) 182, 383, 660
BstDEI CTNAG 2 cut(s) 107, 308
BstDSI CCRYGG 2 cut(s) 201, 402
BstF5I GGATG 1 cut(s) 708
BstFNI CGCG 2 cut(s) 182, 383
BstH2I RGCGCY 1 cut(s) 665
BstHHI GCGC 5 cut(s) 182, 184, 383, 385, 664
BstMCI CGRYCG 2 cut(s) 98, 299
BstMWI GCNNNNNNNGC 4 cut(s) 153, 253, 354, 454
BstNI CCWGG 1 cut(s) 536
BstSCI CCNGG 3 cut(s) 92, 293, 534
BstSFI CTRYAG 2 cut(s) 124, 325
BstUI CGCG 2 cut(s) 182, 383
BstV1I GCAGC 2 cut(s) 256, 457
BstZI CGGCCG 2 cut(s) 95, 296
BsuRI GGCC 4 cut(s) 97, 298, 548, 658
BtgI CCRYGG 2 cut(s) 201, 402
BtsCI GGATG 1 cut(s) 708
BtsI GCAGTG 3 cut(s) 139, 340, 481
BtsIMutI CAGTG 4 cut(s) 139, 165, 340, 481
Cac8I GCNNGC 3 cut(s) 182, 383, 660
CfoI GCGC 5 cut(s) 182, 184, 383, 385, 664
Cfr13I GGNCC 1 cut(s) 656
Csp6I GTAC 2 cut(s) 150, 351
CviQI GTAC 2 cut(s) 150, 351
DdeI CTNAG 2 cut(s) 107, 308
EaeI YGGCCR 2 cut(s) 95, 296
EagI CGGCCG 2 cut(s) 95, 296
Eam1104I CTCTTC 3 cut(s) 215, 416, 647
EarI CTCTTC 3 cut(s) 215, 416, 647
EclXI CGGCCG 2 cut(s) 95, 296
Eco130I CCWWGG 1 cut(s) 549
Eco147I AGGCCT 1 cut(s) 548
Eco47III AGCGCT 1 cut(s) 663
Eco52I CGGCCG 2 cut(s) 95, 296
Eco57I CTGAAG 2 cut(s) 519, 628
EcoRII CCWGG 1 cut(s) 534
EcoT14I CCWWGG 1 cut(s) 549
ErhI CCWWGG 1 cut(s) 549
FaiI YATR 3 cut(s) 120, 321, 606
FaqI GGGAC 2 cut(s) 275, 476
Fnu4HI GCNGC 4 cut(s) 98, 245, 299, 446
FokI GGATG 1 cut(s) 695
Fsp4HI GCNGC 4 cut(s) 98, 245, 299, 446
FspBI CTAG 4 cut(s) 153, 228, 354, 429
GlaI GCGC 5 cut(s) 181, 183, 382, 384, 663
GluI GCNGC 4 cut(s) 98, 245, 299, 446
HaeII RGCGCY 1 cut(s) 665
HaeIII GGCC 4 cut(s) 97, 298, 548, 658
HapII CCGG 2 cut(s) 94, 295
HhaI GCGC 5 cut(s) 182, 184, 383, 385, 664
Hin6I GCGC 5 cut(s) 180, 182, 381, 383, 662
HinP1I GCGC 5 cut(s) 180, 182, 381, 383, 662
HinfI GANTC 4 cut(s) 111, 312, 637, 683
HpaII CCGG 2 cut(s) 94, 295
HphI GGTGA 3 cut(s) 278, 479, 491
Hpy166II GTNNAC 1 cut(s) 482
Hpy188I TCNGA 3 cut(s) 110, 311, 513
Hpy188III TCNNGA 5 cut(s) 217, 228, 418, 429, 723
Hpy8I GTNNAC 1 cut(s) 482
Hpy99I CGWCG 1 cut(s) 656
HpyAV CCTTC 6 cut(s) 229, 263, 430, 464, 565, 711
HpyCH4III ACNGT 7 cut(s) 202, 213, 266, 403, 414, 467, 486
HpyCH4V TGCA 3 cut(s) 44, 126, 327
HpyF10VI GCNNNNNNNGC 4 cut(s) 153, 253, 354, 454
HpyF3I CTNAG 2 cut(s) 107, 308
HspAI GCGC 5 cut(s) 180, 182, 381, 383, 662
LmnI GCTCC 3 cut(s) 553, 629, 694
Lsp1109I GCAGC 2 cut(s) 256, 457
MaeI CTAG 4 cut(s) 153, 228, 354, 429
MaeIII GTNAC 2 cut(s) 77, 275
MboII GAAGA 6 cut(s) 232, 274, 433, 526, 607, 634
MlyI GAGTC 1 cut(s) 677
MmeI TCCRAC 1 cut(s) 660
MseI TTAA 1 cut(s) 666
MspI CCGG 2 cut(s) 94, 295
MspR9I CCNGG 3 cut(s) 94, 295, 536
MvaI CCWGG 1 cut(s) 536
MvnI CGCG 2 cut(s) 182, 383
MwoI GCNNNNNNNGC 4 cut(s) 153, 253, 354, 454
NciI CCSGG 2 cut(s) 94, 295
NlaIV GGNNCC 2 cut(s) 690, 721
NmeAIII GCCGAG 1 cut(s) 665
NmuCI GTSAC 1 cut(s) 275
PauI GCGCGC 2 cut(s) 180, 381
PceI AGGCCT 1 cut(s) 548
PfeI GAWTC 3 cut(s) 111, 312, 637
PkrI GCNGC 4 cut(s) 99, 246, 300, 447
PleI GAGTC 1 cut(s) 677
PpsI GAGTC 1 cut(s) 677
Psp6I CCWGG 1 cut(s) 534
PspGI CCWGG 1 cut(s) 534
PspN4I GGNNCC 2 cut(s) 690, 721
PspPI GGNCC 1 cut(s) 656
PstI CTGCAG 2 cut(s) 128, 329
PteI GCGCGC 2 cut(s) 180, 381
RsaI GTAC 2 cut(s) 151, 352
RsaNI GTAC 2 cut(s) 150, 351
SaqAI TTAA 1 cut(s) 666
SatI GCNGC 4 cut(s) 98, 245, 299, 446
Sau96I GGNCC 1 cut(s) 656
ScaI AGTACT 2 cut(s) 151, 352
SchI GAGTC 1 cut(s) 677
ScrFI CCNGG 3 cut(s) 94, 295, 536
SfcI CTRYAG 2 cut(s) 124, 325
SmlI CTYRAG 1 cut(s) 713
SmoI CTYRAG 1 cut(s) 713
SseBI AGGCCT 1 cut(s) 548
SsiI CCGC 2 cut(s) 98, 299
SspMI CTAG 4 cut(s) 153, 228, 354, 429
StuI AGGCCT 1 cut(s) 548
StyD4I CCNGG 3 cut(s) 92, 293, 534
StyI CCWWGG 1 cut(s) 549
TaaI ACNGT 7 cut(s) 202, 213, 266, 403, 414, 467, 486
TatI WGTACW 2 cut(s) 149, 350
TauI GCSGC 2 cut(s) 100, 301
TfiI GAWTC 3 cut(s) 111, 312, 637
Tru1I TTAA 1 cut(s) 666
Tru9I TTAA 1 cut(s) 666
TscAI CASTG 4 cut(s) 139, 172, 340, 481
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 2 cut(s) 244, 445
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 2 cut(s) 478, 607
TspRI CASTG 4 cut(s) 139, 172, 340, 481
XbaI TCTAGA 2 cut(s) 227, 428
XspI CTAG 4 cut(s) 153, 228, 354, 429
ZrmI AGTACT 2 cut(s) 151, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.