pycom02g10470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0016624
Physical Location & Seq
Forward (+)
7275532 .. 7276630
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g10470.2

Sequence Viewer

Length: 666 bp
ATGGAGGCCAAACTCCTCCACCTACTCAGCTCAACACCAGCCTCCCCAACCCACCTCGCCCACTCAAAACCTTCTCCAACAAAACTGAACCATATCTTCTCACCCGCCACCCGTCCGCGGCCTCTCAGGATCAGCACACTAGTTTACAACACCACCGGCAGTGATGGTGGTGGCAGCACTAGCATTCCGGACACTGACGGCAACAGCGTGGCAGCACCGGACCCCACTGGAGTGCGGTTCAAAAAGAGGTCGAGAAGGCGGACGAAGCAGCAGCGAGAGGAGGGCAATGAGGGGGACGGCGGACGGGTCATGAAGGCTCAAGCTAGTGACGCTCCAAAGAAGTGGGAAGATATGAGCTTGGGGGAGAAGGCATGGGAGCTTTATGTGGGGGAGAAGGGTGCTTTGTTTTGGTTAAACAAGTTTGCTTATGCTTCAATTTACATAGTGATTGGGGCTTGGATTCTGTTCAGCATGCAACTTCATGAATTTGAATGGCTACATGGCATTGACCGGCTGAGCGGTCGCATCTCTTTCAGTCTTGCACCTGCAGATAACAAAGGTTCCAACATTCAGAGCAAGTTACGATGTATAATGCACAGATCATTTACGCGTCTCAACTTGAAGCAACAGAAAGTACACTCGTTAATTGCAGTTCTGGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2839

Protein Analysis

222

Amino Acids

24.62

Weight (kDa)

9.96

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016624)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17972
fragaria_vesca FvH4_1g11940
malus_domestica MD02G1133200.v1.1
prunus_persica Prupe.7G167500_v2.0.a1
pyrus_communis pycom02g10470
rosa_laevigata RLG00000016890
rosa_multiflora Rmu_sc0002542.1_g000019
rosa_roxburghii Rroxscaffold_2G00142990
rosa_rugosa Rorug02G0080500
rosa_samantha Rh2AG130400 Rh2BG133500 Rh2CG134000 Rh2DG134300
rosa_wichuraiana Rw2G010060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 553
Acc36I ACCTGC 1 cut(s) 553
AccBSI CCGCTC 1 cut(s) 519
AccII CGCG 2 cut(s) 118, 610
AccIII TCCGGA 1 cut(s) 187
AciI CCGC 7 cut(s) 105, 116, 118, 235, 259, 300, 519
AclWI GGATC 1 cut(s) 137
AcsI RAATTY 1 cut(s) 485
AfaI GTAC 1 cut(s) 636
AfiI CCNNNNNNNGG 1 cut(s) 117
AflIII ACRYGT 1 cut(s) 608
AgsI TTSAA 4 cut(s) 241, 435, 491, 622
AhlI ACTAGT 1 cut(s) 139
AleI CACNNNNGTG 1 cut(s) 230
AluBI AGCT 4 cut(s) 30, 323, 357, 379
AluI AGCT 4 cut(s) 30, 323, 357, 379
Alw26I GTCTC 1 cut(s) 617
AlwI GGATC 1 cut(s) 137
Aor13HI TCCGGA 1 cut(s) 187
AoxI GGCC 2 cut(s) 6, 119
ApeKI GCWGC 4 cut(s) 174, 212, 268, 271
ApoI RAATTY 1 cut(s) 485
AspS9I GGNCC 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 93
AvaII GGWCC 1 cut(s) 220
BbvI GCAGC 4 cut(s) 186, 224, 280, 283
BccI CCATC 1 cut(s) 158
BceAI ACGGC 2 cut(s) 214, 313
BcoDI GTCTC 1 cut(s) 617
BcuI ACTAGT 1 cut(s) 139
BfaI CTAG 3 cut(s) 140, 180, 324
BfmI CTRYAG 1 cut(s) 546
BfuAI ACCTGC 1 cut(s) 553
BisI GCNGC 5 cut(s) 119, 175, 213, 269, 272
BlpI GCTNAGC 1 cut(s) 515
BlsI GCNGC 5 cut(s) 120, 176, 214, 270, 273
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 2 cut(s) 222, 562
BmsI GCATC 1 cut(s) 534
BpmI CTGGAG 1 cut(s) 249
Bpu1102I GCTNAGC 1 cut(s) 515
BpuEI CTTGAG 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 116
BsaWI WCCGGW 2 cut(s) 187, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse118I RCCGGY 2 cut(s) 155, 510
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 292
BseAI TCCGGA 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 3 cut(s) 40, 139, 506
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 2 cut(s) 5, 293
BseXI GCAGC 4 cut(s) 186, 224, 280, 283
Bsh1236I CGCG 2 cut(s) 118, 610
Bsh1285I CGRYCG 1 cut(s) 523
BshFI GGCC 2 cut(s) 8, 121
BsiEI CGRYCG 1 cut(s) 523
BsiSI CCGG 4 cut(s) 156, 188, 218, 511
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 617
BsmBI CGTCTC 1 cut(s) 617
BsmFI GGGAC 1 cut(s) 308
BsmI GAATGC 1 cut(s) 183
BsnI GGCC 2 cut(s) 8, 121
Bsp13I TCCGGA 1 cut(s) 187
Bsp143I GATC 2 cut(s) 129, 599
Bsp1720I GCTNAGC 1 cut(s) 515
BspACI CCGC 7 cut(s) 105, 116, 118, 235, 259, 300, 519
BspANI GGCC 2 cut(s) 8, 121
BspCNI CTCAG 3 cut(s) 39, 138, 507
BspEI TCCGGA 1 cut(s) 187
BspFNI CGCG 2 cut(s) 118, 610
BspHI TCATGA 2 cut(s) 309, 481
BspLI GGNNCC 2 cut(s) 222, 562
BspMAI CTGCAG 1 cut(s) 550
BspMI ACCTGC 1 cut(s) 553
BspPI GGATC 1 cut(s) 137
BsrBI CCGCTC 1 cut(s) 519
BsrDI GCAATG 1 cut(s) 292
BsrFI RCCGGY 2 cut(s) 155, 510
BsrI ACTGG 1 cut(s) 232
BssAI RCCGGY 2 cut(s) 155, 510
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 2 cut(s) 129, 599
BstC8I GCNNGC 1 cut(s) 473
BstDEI CTNAG 3 cut(s) 26, 125, 515
BstDSI CCRYGG 1 cut(s) 116
BstFNI CGCG 2 cut(s) 118, 610
BstKTI GATC 2 cut(s) 132, 602
BstMAI GTCTC 1 cut(s) 617
BstMBI GATC 2 cut(s) 129, 599
BstMCI CGRYCG 1 cut(s) 523
BstMWI GCNNNNNNNGC 3 cut(s) 180, 265, 329
BstNSI RCATGY 1 cut(s) 475
BstSFI CTRYAG 1 cut(s) 546
BstUI CGCG 2 cut(s) 118, 610
BstV1I GCAGC 4 cut(s) 186, 224, 280, 283
BstXI CCANNNNNNTGG 1 cut(s) 342
BsuRI GGCC 2 cut(s) 8, 121
BtgI CCRYGG 1 cut(s) 116
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 3 cut(s) 166, 192, 225
BveI ACCTGC 1 cut(s) 553
Cac8I GCNNGC 1 cut(s) 473
CciI TCATGA 2 cut(s) 309, 481
Cfr10I RCCGGY 2 cut(s) 155, 510
Cfr13I GGNCC 1 cut(s) 220
Cfr42I CCGCGG 1 cut(s) 119
CseI GACGC 2 cut(s) 338, 599
Csp6I GTAC 1 cut(s) 635
CviAII CATG 5 cut(s) 310, 372, 472, 482, 500
CviQI GTAC 1 cut(s) 635
DdeI CTNAG 3 cut(s) 26, 125, 515
DpnI GATC 2 cut(s) 131, 601
DpnII GATC 2 cut(s) 129, 599
EciI GGCGGA 2 cut(s) 274, 315
Eco47I GGWCC 1 cut(s) 220
Esp3I CGTCTC 1 cut(s) 617
FaeI CATG 5 cut(s) 313, 375, 475, 485, 503
FaqI GGGAC 1 cut(s) 308
FatI CATG 5 cut(s) 309, 371, 471, 481, 499
FauI CCCGC 1 cut(s) 112
Fnu4HI GCNGC 5 cut(s) 119, 175, 213, 269, 272
Fsp4HI GCNGC 5 cut(s) 119, 175, 213, 269, 272
FspBI CTAG 3 cut(s) 140, 180, 324
GluI GCNGC 5 cut(s) 119, 175, 213, 269, 272
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 2 cut(s) 8, 121
HapII CCGG 4 cut(s) 156, 188, 218, 511
HgaI GACGC 2 cut(s) 338, 599
Hin1II CATG 5 cut(s) 313, 375, 475, 485, 503
HinfI GANTC 1 cut(s) 460
HpaII CCGG 4 cut(s) 156, 188, 218, 511
HphI GGTGA 1 cut(s) 93
Hpy166II GTNNAC 2 cut(s) 145, 637
Hpy188I TCNGA 1 cut(s) 573
Hpy188III TCNNGA 6 cut(s) 127, 188, 252, 310, 482, 656
Hpy8I GTNNAC 2 cut(s) 145, 637
HpyAV CCTTC 5 cut(s) 81, 249, 307, 361, 388
HpyCH4V TGCA 5 cut(s) 475, 542, 548, 595, 650
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 265, 329
HpyF3I CTNAG 3 cut(s) 26, 125, 515
Hsp92II CATG 5 cut(s) 313, 375, 475, 485, 503
Kpn2I TCCGGA 1 cut(s) 187
KspI CCGCGG 1 cut(s) 119
Kzo9I GATC 2 cut(s) 129, 599
LmnI GCTCC 2 cut(s) 337, 376
LpnPI CCDG 9 cut(s) 51, 112, 169, 201, 213, 231, 524, 558, 641
Lsp1109I GCAGC 4 cut(s) 186, 224, 280, 283
LweI GCATC 1 cut(s) 534
MaeI CTAG 3 cut(s) 140, 180, 324
MaeIII GTNAC 2 cut(s) 326, 579
MalI GATC 2 cut(s) 131, 601
MbiI CCGCTC 1 cut(s) 519
MboI GATC 2 cut(s) 129, 599
MboII GAAGA 2 cut(s) 88, 359
MluCI AATT 3 cut(s) 435, 485, 645
MluI ACGCGT 1 cut(s) 608
MmeI TCCRAC 2 cut(s) 101, 588
MnlI CCTC 8 cut(s) 26, 52, 65, 132, 240, 271, 274, 283
MroI TCCGGA 1 cut(s) 187
MseI TTAA 2 cut(s) 413, 644
MslI CAYNNNNRTG 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 118
MspI CCGG 4 cut(s) 156, 188, 218, 511
Mva1269I GAATGC 1 cut(s) 183
MvnI CGCG 2 cut(s) 118, 610
MwoI GCNNNNNNNGC 3 cut(s) 180, 265, 329
NdeII GATC 2 cut(s) 129, 599
NlaIII CATG 5 cut(s) 313, 375, 475, 485, 503
NlaIV GGNNCC 2 cut(s) 222, 562
NmuCI GTSAC 1 cut(s) 326
NspI RCATGY 1 cut(s) 475
OliI CACNNNNGTG 1 cut(s) 230
PaeI GCATGC 1 cut(s) 475
PagI TCATGA 2 cut(s) 309, 481
PaqCI CACCTGC 1 cut(s) 553
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PctI GAATGC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 460
PkrI GCNGC 5 cut(s) 120, 176, 214, 270, 273
PspN4I GGNNCC 2 cut(s) 222, 562
PspPI GGNCC 1 cut(s) 220
PstI CTGCAG 1 cut(s) 550
RsaI GTAC 1 cut(s) 636
RsaNI GTAC 1 cut(s) 635
RseI CAYNNNNRTG 1 cut(s) 230
SacII CCGCGG 1 cut(s) 119
SaqAI TTAA 2 cut(s) 413, 644
SatI GCNGC 5 cut(s) 119, 175, 213, 269, 272
Sau3AI GATC 2 cut(s) 129, 599
Sau96I GGNCC 1 cut(s) 220
SfaNI GCATC 1 cut(s) 534
SfcI CTRYAG 1 cut(s) 546
Sfr303I CCGCGG 1 cut(s) 119
SgrBI CCGCGG 1 cut(s) 119
SinI GGWCC 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 318
SmoI CTYRAG 1 cut(s) 318
SpeI ACTAGT 1 cut(s) 139
SphI GCATGC 1 cut(s) 475
Sse9I AATT 3 cut(s) 435, 485, 645
SsiI CCGC 7 cut(s) 105, 116, 118, 235, 259, 300, 519
SspMI CTAG 3 cut(s) 140, 180, 324
TaqI TCGA 1 cut(s) 251
TasI AATT 3 cut(s) 435, 485, 645
TatI WGTACW 1 cut(s) 634
TauI GCSGC 1 cut(s) 121
TfiI GAWTC 1 cut(s) 460
Tru1I TTAA 2 cut(s) 413, 644
Tru9I TTAA 2 cut(s) 413, 644
TscAI CASTG 3 cut(s) 166, 199, 232
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 4 cut(s) 174, 212, 268, 271
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 3 cut(s) 326, 470, 498
TspRI CASTG 3 cut(s) 166, 199, 232
VpaK11BI GGWCC 1 cut(s) 220
XapI RAATTY 1 cut(s) 485
XceI RCATGY 1 cut(s) 475
XspI CTAG 3 cut(s) 140, 180, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.