Rroxscaffold_2G00142990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016624
Physical Location & Seq
Reverse (-)
81038155 .. 81038685
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00142990.1

Sequence Viewer

Length: 531 bp
ATGGAAGCCAAACTCCTCCATCTCCTCGCTTCAAAACCAGTTGCACCACCCAACCTCGCCCTCGCCAAACCTACCTGTAACCACATCTTCCCACCCACCCGGCCGCACCAGCTCAGAATCACTCCTATCTGCAGTAGCAGTGATGGTGGCAGCAGTACTAGCCCTGACACTACTGACAGCAACAGCGCGCCAACGCCGACAGACACCGTGGGAATACGGTTCAAGAAGAGGTCTAGAAACAAGGCGAAGCAGCAGAGAGAGCAGAGGGAGGGTGAAGGCAGTGGTGAACGGTTCGTCAAGGCTGAAGCTGCTGTTCCGAAGAAGTGGGAGGAAATGAGCCTGGGGGAACAGGCCTTGGAGCTTTACTTGGGGGAGAAGGGTTTGCTGTATTGGATAAACAAGTTTGCATATGCTTCCATCTTCATTGTTATCGGAGCTTGGATTCTCTTCAGGTTCGTCGGGCCAGCGCTTAACCTTTACCAGTTGGACTCGGCTCCTCTTTCTCCTTCTGCCATCCTCAAGGGTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2839

Protein Analysis

176

Amino Acids

19.28

Weight (kDa)

9.42

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016624)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17972
fragaria_vesca FvH4_1g11940
malus_domestica MD02G1133200.v1.1
prunus_persica Prupe.7G167500_v2.0.a1
pyrus_communis pycom02g10470
rosa_laevigata RLG00000016890
rosa_multiflora Rmu_sc0002542.1_g000019
rosa_roxburghii Rroxscaffold_2G00142990
rosa_rugosa Rorug02G0080500
rosa_samantha Rh2AG130400 Rh2BG133500 Rh2CG134000 Rh2DG134300
rosa_wichuraiana Rw2G010060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 188
AciI CCGC 1 cut(s) 104
AcoI YGGCCR 1 cut(s) 101
AcuI CTGAAG 2 cut(s) 324, 433
AfaI GTAC 1 cut(s) 157
AfeI AGCGCT 1 cut(s) 468
AgsI TTSAA 2 cut(s) 33, 223
AjnI CCWGG 1 cut(s) 339
AluBI AGCT 4 cut(s) 112, 308, 361, 437
AluI AGCT 4 cut(s) 112, 308, 361, 437
Aor51HI AGCGCT 1 cut(s) 468
AoxI GGCC 3 cut(s) 101, 351, 461
ApeKI GCWGC 3 cut(s) 150, 250, 308
AspLEI GCGC 3 cut(s) 188, 190, 469
AspS9I GGNCC 1 cut(s) 461
AsuC2I CCSGG 1 cut(s) 100
AsuHPI GGTGA 2 cut(s) 284, 296
BbvI GCAGC 3 cut(s) 162, 262, 295
BccI CCATC 4 cut(s) 27, 137, 425, 521
BciT130I CCWGG 1 cut(s) 341
BcnI CCSGG 1 cut(s) 100
BfaI CTAG 2 cut(s) 159, 234
BfmI CTRYAG 1 cut(s) 130
BfoI RGCGCY 1 cut(s) 470
BisI GCNGC 4 cut(s) 104, 151, 251, 309
BlsI GCNGC 4 cut(s) 105, 152, 252, 310
BmcAI AGTACT 1 cut(s) 157
Bme1390I CCNGG 2 cut(s) 100, 341
BmgT120I GGNCC 1 cut(s) 461
BmiI GGNNCC 2 cut(s) 495, 526
BmrFI CCNGG 2 cut(s) 100, 341
BpuEI CTTGAG 1 cut(s) 503
BpuMI CCSGG 1 cut(s) 100
BsaJI CCNNGG 3 cut(s) 207, 340, 354
Bse1I ACTGG 2 cut(s) 38, 481
BseBI CCWGG 1 cut(s) 341
BseDI CCNNGG 3 cut(s) 207, 340, 354
BseGI GGATG 1 cut(s) 513
BseMII CTCAG 1 cut(s) 127
BseNI ACTGG 2 cut(s) 38, 481
BsePI GCGCGC 1 cut(s) 186
BseRI GAGGAG 3 cut(s) 5, 14, 486
BseX3I CGGCCG 1 cut(s) 101
BseXI GCAGC 3 cut(s) 162, 262, 295
Bsh1236I CGCG 1 cut(s) 188
Bsh1285I CGRYCG 1 cut(s) 104
BshFI GGCC 3 cut(s) 103, 353, 463
BsiEI CGRYCG 1 cut(s) 104
BsiSI CCGG 1 cut(s) 100
BsnI GGCC 3 cut(s) 103, 353, 463
BspACI CCGC 1 cut(s) 104
BspANI GGCC 3 cut(s) 103, 353, 463
BspCNI CTCAG 1 cut(s) 126
BspFNI CGCG 1 cut(s) 188
BspLI GGNNCC 2 cut(s) 495, 526
BspMAI CTGCAG 1 cut(s) 134
BsrI ACTGG 2 cut(s) 38, 481
BssECI CCNNGG 3 cut(s) 207, 340, 354
BssHII GCGCGC 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 3 cut(s) 208, 219, 291
Bst6I CTCTTC 2 cut(s) 221, 452
BstC8I GCNNGC 2 cut(s) 188, 465
BstDEI CTNAG 1 cut(s) 113
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 1 cut(s) 513
BstFNI CGCG 1 cut(s) 188
BstH2I RGCGCY 1 cut(s) 470
BstHHI GCGC 3 cut(s) 188, 190, 469
BstMCI CGRYCG 1 cut(s) 104
BstMWI GCNNNNNNNGC 4 cut(s) 109, 159, 259, 308
BstNI CCWGG 1 cut(s) 341
BstSCI CCNGG 2 cut(s) 98, 339
BstSFI CTRYAG 1 cut(s) 130
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 3 cut(s) 162, 262, 295
BstZI CGGCCG 1 cut(s) 101
BsuRI GGCC 3 cut(s) 103, 353, 463
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 513
BtsI GCAGTG 2 cut(s) 145, 286
BtsIMutI CAGTG 2 cut(s) 145, 286
Cac8I GCNNGC 2 cut(s) 188, 465
CfoI GCGC 3 cut(s) 188, 190, 469
Cfr13I GGNCC 1 cut(s) 461
Csp6I GTAC 1 cut(s) 156
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 1 cut(s) 113
EaeI YGGCCR 1 cut(s) 101
EagI CGGCCG 1 cut(s) 101
Eam1104I CTCTTC 2 cut(s) 221, 452
EarI CTCTTC 2 cut(s) 221, 452
EclXI CGGCCG 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 354
Eco147I AGGCCT 1 cut(s) 353
Eco47III AGCGCT 1 cut(s) 468
Eco52I CGGCCG 1 cut(s) 101
Eco57I CTGAAG 2 cut(s) 324, 433
EcoRII CCWGG 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
FaiI YATR 2 cut(s) 409, 411
FauNDI CATATG 1 cut(s) 409
Fnu4HI GCNGC 4 cut(s) 104, 151, 251, 309
FokI GGATG 1 cut(s) 500
Fsp4HI GCNGC 4 cut(s) 104, 151, 251, 309
FspBI CTAG 2 cut(s) 159, 234
GlaI GCGC 3 cut(s) 187, 189, 468
GluI GCNGC 4 cut(s) 104, 151, 251, 309
HaeII RGCGCY 1 cut(s) 470
HaeIII GGCC 3 cut(s) 103, 353, 463
HapII CCGG 1 cut(s) 100
HhaI GCGC 3 cut(s) 188, 190, 469
Hin6I GCGC 3 cut(s) 186, 188, 467
HinP1I GCGC 3 cut(s) 186, 188, 467
HinfI GANTC 3 cut(s) 117, 442, 488
HpaII CCGG 1 cut(s) 100
HphI GGTGA 2 cut(s) 284, 296
Hpy166II GTNNAC 1 cut(s) 287
Hpy188I TCNGA 3 cut(s) 116, 318, 434
Hpy188III TCNNGA 3 cut(s) 223, 234, 528
Hpy8I GTNNAC 1 cut(s) 287
Hpy99I CGWCG 1 cut(s) 461
HpyAV CCTTC 3 cut(s) 269, 370, 516
HpyCH4III ACNGT 3 cut(s) 208, 219, 291
HpyCH4V TGCA 3 cut(s) 44, 132, 407
HpyF10VI GCNNNNNNNGC 4 cut(s) 109, 159, 259, 308
HpyF3I CTNAG 1 cut(s) 113
HspAI GCGC 3 cut(s) 186, 188, 467
LmnI GCTCC 3 cut(s) 358, 434, 499
Lsp1109I GCAGC 3 cut(s) 162, 262, 295
MaeI CTAG 2 cut(s) 159, 234
MaeIII GTNAC 1 cut(s) 77
MboII GAAGA 5 cut(s) 79, 238, 331, 412, 439
MlyI GAGTC 1 cut(s) 482
MmeI TCCRAC 1 cut(s) 465
MseI TTAA 1 cut(s) 471
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 2 cut(s) 100, 341
MvaI CCWGG 1 cut(s) 341
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 4 cut(s) 109, 159, 259, 308
NciI CCSGG 1 cut(s) 100
NdeI CATATG 1 cut(s) 409
NlaIV GGNNCC 2 cut(s) 495, 526
NmeAIII GCCGAG 1 cut(s) 470
PauI GCGCGC 1 cut(s) 186
PceI AGGCCT 1 cut(s) 353
PfeI GAWTC 2 cut(s) 117, 442
PkrI GCNGC 4 cut(s) 105, 152, 252, 310
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
Psp6I CCWGG 1 cut(s) 339
PspGI CCWGG 1 cut(s) 339
PspN4I GGNNCC 2 cut(s) 495, 526
PspPI GGNCC 1 cut(s) 461
PstI CTGCAG 1 cut(s) 134
PteI GCGCGC 1 cut(s) 186
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 4 cut(s) 104, 151, 251, 309
Sau96I GGNCC 1 cut(s) 461
ScaI AGTACT 1 cut(s) 157
SchI GAGTC 1 cut(s) 482
ScrFI CCNGG 2 cut(s) 100, 341
SfcI CTRYAG 1 cut(s) 130
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
SseBI AGGCCT 1 cut(s) 353
SsiI CCGC 1 cut(s) 104
SspMI CTAG 2 cut(s) 159, 234
StuI AGGCCT 1 cut(s) 353
StyD4I CCNGG 2 cut(s) 98, 339
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 3 cut(s) 208, 219, 291
TatI WGTACW 1 cut(s) 155
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 2 cut(s) 117, 442
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TscAI CASTG 2 cut(s) 145, 286
TseI GCWGC 3 cut(s) 150, 250, 308
TspDTI ATGAA 1 cut(s) 412
TspRI CASTG 2 cut(s) 145, 286
XbaI TCTAGA 1 cut(s) 233
XspI CTAG 2 cut(s) 159, 234
ZrmI AGTACT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.