Prupe.7G167500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0016624
Physical Location & Seq
Reverse (-)
17071117 .. 17071689
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G167500.1

Sequence Viewer

Length: 573 bp
ATGGAGGCCAAGCTCCTCCATTTCCTCGCTTCAACACCATCCTCACCAACCCACCTTGTCCTCTCAAAACCTACAGGAACAGGACACAACCATATCTTCTCAGGGTTCTCACCTACCCGTCCAGGATGTCTCAGAATCTCTACACCCATTTACAACAGCACTGGCAGTGATGGTGGCAACACCAGTAGTCCGGAAACTGACAGTAACAGCGTGCCGCCGCCACTGGCGCCGGACAACACGGGACTGCGATTTCGAAAGAGGTCGAGAAGGCGGACGAAACTGCAGAGAGAGGAGGGCAGTGATGGGGATGGTGGACGGTTCACAAAGGCTCAAGCTATTACTAAACCTGCTGCTGCTCCGAAGAAGTGGGAGGATATGAGTCTGGGTGAGAAGGCCTTGGAACTTTATGTGGGGGAGAAAGGGTTGCTATTTTGGATAAACAAGTTTGCTTATGCTTCCATTTACATTGTGATTGGAGCTTGGCTTTGCTTCAGGTTTGTTGGACCAGCACTTAACCTTTACCAGTTGGATGCACCTCCTCTCTCTCCCACTTCAATCCTCAAGGGTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2839

Protein Analysis

191

Amino Acids

20.62

Weight (kDa)

9.66

Isoelectric Point (pI)

54.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016624)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17972
fragaria_vesca FvH4_1g11940
malus_domestica MD02G1133200.v1.1
prunus_persica Prupe.7G167500_v2.0.a1
pyrus_communis pycom02g10470
rosa_laevigata RLG00000016890
rosa_multiflora Rmu_sc0002542.1_g000019
rosa_roxburghii Rroxscaffold_2G00142990
rosa_rugosa Rorug02G0080500
rosa_samantha Rh2AG130400 Rh2BG133500 Rh2CG134000 Rh2DG134300
rosa_wichuraiana Rw2G010060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 355
AccB1I GGYRCC 1 cut(s) 226
AccIII TCCGGA 1 cut(s) 190
AciI CCGC 3 cut(s) 215, 218, 271
AcuI CTGAAG 1 cut(s) 475
AcyI GRCGYC 1 cut(s) 227
AgsI TTSAA 2 cut(s) 33, 555
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 3 cut(s) 13, 335, 479
AluI AGCT 3 cut(s) 13, 335, 479
Alw26I GTCTC 1 cut(s) 134
Aor13HI TCCGGA 1 cut(s) 190
AoxI GGCC 2 cut(s) 6, 393
ApeKI GCWGC 2 cut(s) 350, 353
ArsI GACNNNNNNTTYG 2 cut(s) 234, 266
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 1 cut(s) 503
AsuHPI GGTGA 3 cut(s) 36, 102, 398
AsuII TTCGAA 1 cut(s) 253
AvaII GGWCC 1 cut(s) 503
BanI GGYRCC 1 cut(s) 226
BbvI GCAGC 2 cut(s) 337, 340
BccI CCATC 4 cut(s) 46, 164, 296, 302
BciT130I CCWGG 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 134
BfmI CTRYAG 2 cut(s) 72, 281
BfoI RGCGCY 1 cut(s) 230
BfuAI ACCTGC 1 cut(s) 355
BisI GCNGC 4 cut(s) 215, 218, 351, 354
BlsI GCNGC 4 cut(s) 216, 219, 352, 355
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 503
BmgT120I GGNCC 1 cut(s) 503
BmiI GGNNCC 2 cut(s) 228, 568
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 1 cut(s) 520
Bpu14I TTCGAA 1 cut(s) 253
BpuEI CTTGAG 2 cut(s) 315, 545
BsaHI GRCGYC 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 396
BsaWI WCCGGW 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 407, 437
Bse1I ACTGG 4 cut(s) 166, 183, 228, 523
BseAI TCCGGA 1 cut(s) 190
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 4 cut(s) 38, 131, 313, 535
BseMII CTCAG 2 cut(s) 114, 145
BseNI ACTGG 4 cut(s) 166, 183, 228, 523
BseRI GAGGAG 3 cut(s) 5, 305, 528
BseXI GCAGC 2 cut(s) 337, 340
BshFI GGCC 2 cut(s) 8, 395
BshNI GGYRCC 1 cut(s) 226
BsiSI CCGG 2 cut(s) 191, 230
BslFI GGGAC 1 cut(s) 255
BsmAI GTCTC 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 255
BsnI GGCC 2 cut(s) 8, 395
Bsp119I TTCGAA 1 cut(s) 253
Bsp13I TCCGGA 1 cut(s) 190
BspACI CCGC 3 cut(s) 215, 218, 271
BspANI GGCC 2 cut(s) 8, 395
BspCNI CTCAG 2 cut(s) 113, 144
BspEI TCCGGA 1 cut(s) 190
BspLI GGNNCC 2 cut(s) 228, 568
BspMAI CTGCAG 1 cut(s) 285
BspMI ACCTGC 1 cut(s) 355
BspT104I TTCGAA 1 cut(s) 253
BspT107I GGYRCC 1 cut(s) 226
BsrI ACTGG 4 cut(s) 166, 183, 228, 523
BssECI CCNNGG 1 cut(s) 396
BssNI GRCGYC 1 cut(s) 227
BssT1I CCWWGG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 203, 318
BstACI GRCGYC 1 cut(s) 227
BstBI TTCGAA 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 212
BstDEI CTNAG 2 cut(s) 100, 131
BstF5I GGATG 4 cut(s) 38, 131, 313, 535
BstH2I RGCGCY 1 cut(s) 230
BstHHI GCGC 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 134
BstMWI GCNNNNNNNGC 1 cut(s) 226
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstSFI CTRYAG 2 cut(s) 72, 281
BstV1I GCAGC 2 cut(s) 337, 340
BsuRI GGCC 2 cut(s) 8, 395
BtsCI GGATG 4 cut(s) 38, 131, 313, 535
BtsI GCAGTG 2 cut(s) 172, 304
BtsIMutI CAGTG 4 cut(s) 159, 172, 221, 304
BveI ACCTGC 1 cut(s) 355
Cac8I GCNNGC 1 cut(s) 212
CfoI GCGC 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 503
CviJI RGCY 7 cut(s) 8, 13, 329, 335, 395, 479, 484
CviKI_1 RGCY 7 cut(s) 8, 13, 329, 335, 395, 479, 484
DdeI CTNAG 2 cut(s) 100, 131
DinI GGCGCC 1 cut(s) 228
EciI GGCGGA 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 396
Eco147I AGGCCT 1 cut(s) 395
Eco47I GGWCC 1 cut(s) 503
Eco57I CTGAAG 1 cut(s) 475
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 396
EgeI GGCGCC 1 cut(s) 228
EheI GGCGCC 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 396
FaiI YATR 4 cut(s) 93, 377, 408, 453
FaqI GGGAC 1 cut(s) 255
Fnu4HI GCNGC 4 cut(s) 215, 218, 351, 354
FokI GGATG 4 cut(s) 25, 138, 320, 542
Fsp4HI GCNGC 4 cut(s) 215, 218, 351, 354
GlaI GCGC 1 cut(s) 228
GluI GCNGC 4 cut(s) 215, 218, 351, 354
HaeII RGCGCY 1 cut(s) 230
HaeIII GGCC 2 cut(s) 8, 395
HapII CCGG 2 cut(s) 191, 230
HhaI GCGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 227
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HinfI GANTC 2 cut(s) 135, 379
HpaII CCGG 2 cut(s) 191, 230
HphI GGTGA 3 cut(s) 36, 102, 398
Hpy166II GTNNAC 2 cut(s) 314, 321
Hpy188I TCNGA 2 cut(s) 134, 360
Hpy188III TCNNGA 3 cut(s) 191, 264, 570
Hpy8I GTNNAC 2 cut(s) 314, 321
HpyAV CCTTC 2 cut(s) 261, 385
HpyCH4III ACNGT 2 cut(s) 203, 318
HpyCH4V TGCA 2 cut(s) 283, 533
HpyF10VI GCNNNNNNNGC 1 cut(s) 226
HpyF3I CTNAG 2 cut(s) 100, 131
Hsp92I GRCGYC 1 cut(s) 227
HspAI GCGC 1 cut(s) 227
KasI GGCGCC 1 cut(s) 226
Kpn2I TCCGGA 1 cut(s) 190
LmnI GCTCC 3 cut(s) 18, 361, 476
Lsp1109I GCAGC 2 cut(s) 337, 340
LweI GCATC 1 cut(s) 520
MaeIII GTNAC 1 cut(s) 203
MboII GAAGA 2 cut(s) 88, 373
Mly113I GGCGCC 1 cut(s) 227
MlyI GAGTC 1 cut(s) 388
MmeI TCCRAC 2 cut(s) 481, 507
MroI TCCGGA 1 cut(s) 190
MseI TTAA 1 cut(s) 513
MspI CCGG 2 cut(s) 191, 230
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 226
NarI GGCGCC 1 cut(s) 227
NlaIV GGNNCC 2 cut(s) 228, 568
NspV TTCGAA 1 cut(s) 253
PceI AGGCCT 1 cut(s) 395
PfeI GAWTC 1 cut(s) 135
PfoI TCCNGGA 1 cut(s) 121
PkrI GCNGC 4 cut(s) 216, 219, 352, 355
PleI GAGTC 1 cut(s) 387
PluTI GGCGCC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 228, 568
PspPI GGNCC 1 cut(s) 503
PstI CTGCAG 1 cut(s) 285
SaqAI TTAA 1 cut(s) 513
SatI GCNGC 4 cut(s) 215, 218, 351, 354
Sau96I GGNCC 1 cut(s) 503
SchI GAGTC 1 cut(s) 388
ScrFI CCNGG 1 cut(s) 123
SfaNI GCATC 1 cut(s) 520
SfcI CTRYAG 2 cut(s) 72, 281
SfoI GGCGCC 1 cut(s) 228
SfuI TTCGAA 1 cut(s) 253
SinI GGWCC 1 cut(s) 503
SmlI CTYRAG 2 cut(s) 330, 560
SmoI CTYRAG 2 cut(s) 330, 560
SseBI AGGCCT 1 cut(s) 395
SsiI CCGC 3 cut(s) 215, 218, 271
SspDI GGCGCC 1 cut(s) 226
StuI AGGCCT 1 cut(s) 395
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 2 cut(s) 203, 318
TaqI TCGA 2 cut(s) 253, 263
TauI GCSGC 2 cut(s) 217, 220
TfiI GAWTC 1 cut(s) 135
Tru1I TTAA 1 cut(s) 513
Tru9I TTAA 1 cut(s) 513
TscAI CASTG 4 cut(s) 166, 172, 228, 304
TseI GCWGC 2 cut(s) 350, 353
TspRI CASTG 4 cut(s) 166, 172, 228, 304
VpaK11BI GGWCC 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.