Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0014596

Physical Location & Seq

Genomic Coordinates Reverse (-)

6765109 .. 6766510

Gene Structure 1402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g12340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGCTTCGATTCTCAAGCTCAGTTTCTAGACACGTCCCTAAGAAACATTCGCTTCGTTTGATTCACGCTAGGTCCAGAAATCGTTGCTATCCTGATGACGAAGACGATGTCTACAAGGCTCGGAGAAGAGAGGTGAACAGAGATGACTACTTTCAGTTGTACAAGAGTAAAGGCCAGCATCTCTTGACTAATCAACGAATTTTGGACAGCATTGTTCGGAAATCGGATATTAAACCCACTGATACTGTCCTGGAGATCGGACCCGGCACCGGAAATCTCACCCTGAAGCTTCTGGAAGCTGCAAATAAAGTTGTAGCGTTTGAGATTGACAAGCGGATGGTGGAGGCTCTTCATAAACGCGTTGTGGAGCGTGGCGTCGGAGATCGGTTGACTGTTGTGTGTAAAGATGCGTTGAAGGCGGAGTTTCCGGAGTTTGATCTTGTTGTGGCAAACATTCCGTATGGGATATCTTCGCCTCTTGTGGCGAAATTGGTGTATGGGGGAAGGAGGTTTCGGAGCGCGACACTGCTGTTGCAGAAGGAGTTCGCGAGGAGATTGTTGGCTAAGCCTGGTGAGTCGGAGTTCAACCGTTTGGCTGTAAATGTGAGCCTGGTGGCGGATGTGGAGTTTGTCATGGATGTGAGCAAGAGGGAGTTTGTTCCTTGTCCGAAAGTGGATTCGTCTGTGGTGATTATTCGTCCGAAAGCTGAAGTTCCGGATGTTAATCTGGAGGAATGGTGTGCTTTTACGAAAGCTTGTTTTGGTAAGAAGAATAAGACTCTTGGGGCGACGTTCAAGCAAAAGAAAAAGGTTGTGGAACTGTTAGGATTGTCCAAATTGACAGATTCAAATGTCGAAAGTGAAAATCATATTGGTAGCAATTGCCCTGACGATGAAGAAGAAAGCGATGAAGAAGAGTGTTCATCTGCTTGCTTGGAAATGGGAGAAGCCAGTTCTTTCAAGGAGAAGTTAATAGGGGTTCTAAAATCAGCTGATTTCGAAAACAAGAGGCCGTCAAAGCTGTCGAATGACGAGTTACTTCATCTACTGGCCCTATTTAATCAAGCGGGAATATATTTTCTTGATCGATCCAAGAGTACAAGTGTAGTGGTCGAATCATTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000179 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009116 GO:0009119 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016433 GO:0016740 GO:0016741 GO:0017144 GO:0022613 GO:0031167 GO:0031974 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042278 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046085 GO:0046128 GO:0046483 GO:0055086 GO:0070013 GO:0071704 GO:0071840 GO:0072521 GO:0090304 GO:0140098 GO:0140102 GO:1901135 GO:1901360 GO:1901564 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RrnaAD

Protein Analysis

376

Amino Acids

42.23

Weight (kDa)

8.29

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RrnaAD	PF00398	54 - 277	4.7e-61	Ribosomal RNA adenine dimethylase
Methyltransf_25	PF13649	83 - 151	1.5e-10	Methyltransferase domain
Methyltransf_11	PF08241	84 - 151	1.1e-07	Methyltransferase domain
Methyltransf_12	PF08242	84 - 151	3.8e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66360 AT5G66360
fragaria_vesca	FvH4_1g12340
malus_domestica	MD02G1137600.v1.1 MD15G1251400.v1.1
prunus_persica	Prupe.7G163000_v2.0.a1
pyrus_communis	pycom02g10890
rosa_chinensis	RchiOBHm_Chr2g0100161
rosa_laevigata	RLG00000016942
rosa_multiflora	Rmu_sc0018554.1_g000006
rosa_roxburghii	Rroxscaffold_2G00142510
rosa_rugosa	Rorug02G0086100
rosa_samantha	Rh2AG135200 Rh2BG138600 Rh2CG140400 Rh2DG140600
rosa_wichuraiana	Rw2G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	266
AccI	GTMKAC	1 cut(s)	111
AccII	CGCG	3 cut(s)	360, 521, 548
AccIII	TCCGGA	2 cut(s)	427, 715
AciI	CCGC	4 cut(s)	334, 419, 617, 1067
AclWI	GGATC	1 cut(s)	1083
AcsI	RAATTY	1 cut(s)	198
AcuI	CTGAAG	2 cut(s)	305, 729
AcyI	GRCGYC	1 cut(s)	375
AfaI	GTAC	2 cut(s)	161, 1099
AfiI	CCNNNNNNNGG	2 cut(s)	269, 616
AflIII	ACRYGT	2 cut(s)	31, 358
AgsI	TTSAA	5 cut(s)	415, 586, 796, 849, 961
AjiI	CACGTC	1 cut(s)	34
AjnI	CCWGG	3 cut(s)	249, 568, 609
AjuI	GAANNNNNNNTTGG	2 cut(s)	855, 887
AluBI	AGCT	7 cut(s)	18, 289, 299, 707, 755, 992, 1021
AluI	AGCT	7 cut(s)	18, 289, 299, 707, 755, 992, 1021
AlwI	GGATC	1 cut(s)	1083
Aor13HI	TCCGGA	2 cut(s)	427, 715
AoxI	GGCC	3 cut(s)	172, 1010, 1050
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	1 cut(s)	198
ArsI	GACNNNNNNTTYG	2 cut(s)	93, 125
Asp700I	GAANNNNTTC	1 cut(s)	542
AspLEI	GCGC	1 cut(s)	521
AspS9I	GGNCC	3 cut(s)	72, 260, 1051
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	4 cut(s)	145, 271, 584, 700
AsuII	TTCGAA	1 cut(s)	999
AvaII	GGWCC	2 cut(s)	72, 260
BanI	GGYRCC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	1 cut(s)	331
BceAI	ACGGC	1 cut(s)	997
BciT130I	CCWGG	3 cut(s)	251, 570, 611
BcnI	CCSGG	1 cut(s)	264
BfaI	CTAG	2 cut(s)	27, 69
BisI	GCNGC	1 cut(s)	300
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	1 cut(s)	301
Bme1390I	CCNGG	4 cut(s)	251, 264, 570, 611
Bme18I	GGWCC	2 cut(s)	72, 260
BmgBI	CACGTC	1 cut(s)	34
BmgT120I	GGNCC	3 cut(s)	72, 260, 1051
BmiI	GGNNCC	2 cut(s)	262, 268
BmrFI	CCNGG	4 cut(s)	251, 264, 570, 611
BmsI	GCATC	2 cut(s)	187, 397
BpiI	GAAGAC	1 cut(s)	108
BpmI	CTGGAG	2 cut(s)	272, 749
Bpu1102I	GCTNAGC	1 cut(s)	564
Bpu14I	TTCGAA	1 cut(s)	999
BpuMI	CCSGG	1 cut(s)	264
Bsa29I	ATCGAT	1 cut(s)	1087
BsaBI	GATNNNNATC	1 cut(s)	723
BsaHI	GRCGYC	1 cut(s)	375
BsaWI	WCCGGW	3 cut(s)	269, 427, 715
BsaXI	ACNNNNNCTCC	2 cut(s)	722, 752
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 616
Bse1I	ACTGG	2 cut(s)	951, 1053
Bse8I	GATNNNNATC	1 cut(s)	723
BseAI	TCCGGA	2 cut(s)	427, 715
BseBI	CCWGG	3 cut(s)	251, 570, 611
BseCI	ATCGAT	1 cut(s)	1087
BseGI	GGATG	4 cut(s)	342, 625, 643, 724
BseJI	GATNNNNATC	1 cut(s)	723
BseLI	CCNNNNNNNGG	2 cut(s)	269, 616
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	2 cut(s)	951, 1053
BseRI	GAGGAG	1 cut(s)	565
BseXI	GCAGC	1 cut(s)	286
Bsh1236I	CGCG	3 cut(s)	360, 521, 548
BshFI	GGCC	3 cut(s)	174, 1012, 1052
BshNI	GGYRCC	1 cut(s)	266
BshVI	ATCGAT	1 cut(s)	1087
BsiSI	CCGG	4 cut(s)	264, 270, 428, 716
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	2 cut(s)	269, 616
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	3 cut(s)	174, 1012, 1052
Bsp119I	TTCGAA	1 cut(s)	999
Bsp13I	TCCGGA	2 cut(s)	427, 715
Bsp1407I	TGTACA	1 cut(s)	159
Bsp143I	GATC	5 cut(s)	255, 382, 436, 1084, 1088
Bsp1720I	GCTNAGC	1 cut(s)	564
Bsp68I	TCGCGA	1 cut(s)	548
BspACI	CCGC	4 cut(s)	334, 419, 617, 1067
BspANI	GGCC	3 cut(s)	174, 1012, 1052
BspCNI	CTCAG	1 cut(s)	32
BspDI	ATCGAT	1 cut(s)	1087
BspEI	TCCGGA	2 cut(s)	427, 715
BspFNI	CGCG	3 cut(s)	360, 521, 548
BspLI	GGNNCC	2 cut(s)	262, 268
BspPI	GGATC	1 cut(s)	1083
BspQI	GCTCTTC	1 cut(s)	354
BspT104I	TTCGAA	1 cut(s)	999
BspT107I	GGYRCC	1 cut(s)	266
BsrGI	TGTACA	1 cut(s)	159
BsrI	ACTGG	2 cut(s)	951, 1053
BssMI	GATC	5 cut(s)	255, 382, 436, 1084, 1088
BssNI	GRCGYC	1 cut(s)	375
Bst2UI	CCWGG	3 cut(s)	251, 570, 611
Bst4CI	ACNGT	4 cut(s)	247, 394, 590, 822
Bst6I	CTCTTC	3 cut(s)	121, 354, 909
BstACI	GRCGYC	1 cut(s)	375
BstAUI	TGTACA	1 cut(s)	159
BstBI	TTCGAA	1 cut(s)	999
BstC8I	GCNNGC	2 cut(s)	176, 931
BstDEI	CTNAG	3 cut(s)	19, 39, 564
BstF5I	GGATG	4 cut(s)	342, 625, 643, 724
BstFNI	CGCG	3 cut(s)	360, 521, 548
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	5 cut(s)	258, 385, 439, 1087, 1091
BstMBI	GATC	5 cut(s)	255, 382, 436, 1084, 1088
BstMWI	GCNNNNNNNGC	2 cut(s)	416, 1018
BstNI	CCWGG	3 cut(s)	251, 570, 611
BstSCI	CCNGG	4 cut(s)	249, 262, 568, 609
BstUI	CGCG	3 cut(s)	360, 521, 548
BstV1I	GCAGC	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	108
Bsu15I	ATCGAT	1 cut(s)	1087
BsuRI	GGCC	3 cut(s)	174, 1012, 1052
BsuTUI	ATCGAT	1 cut(s)	1087
BtgZI	GCGATG	1 cut(s)	921
BtrI	CACGTC	1 cut(s)	34
BtsCI	GGATG	4 cut(s)	342, 625, 643, 724
BtsI	GCAGTG	1 cut(s)	524
BtsIMutI	CAGTG	2 cut(s)	237, 524
BtuMI	TCGCGA	1 cut(s)	548
Cac8I	GCNNGC	2 cut(s)	176, 931
CfoI	GCGC	1 cut(s)	521
Cfr13I	GGNCC	3 cut(s)	72, 260, 1051
ClaI	ATCGAT	1 cut(s)	1087
CseI	GACGC	1 cut(s)	364
Csp6I	GTAC	2 cut(s)	160, 1098
CspCI	CAANNNNNGTGG	2 cut(s)	1089, 1124
CviAII	CATG	1 cut(s)	634
CviQI	GTAC	2 cut(s)	160, 1098
DdeI	CTNAG	3 cut(s)	19, 39, 564
DpnI	GATC	5 cut(s)	257, 384, 438, 1086, 1090
DpnII	GATC	5 cut(s)	255, 382, 436, 1084, 1088
Eam1104I	CTCTTC	3 cut(s)	121, 354, 909
EarI	CTCTTC	3 cut(s)	121, 354, 909
EciI	GGCGGA	2 cut(s)	434, 632
Eco32I	GATATC	1 cut(s)	468
Eco47I	GGWCC	2 cut(s)	72, 260
Eco57I	CTGAAG	2 cut(s)	305, 729
EcoRII	CCWGG	3 cut(s)	249, 568, 609
EcoRV	GATATC	1 cut(s)	468
FaeI	CATG	1 cut(s)	637
FaiI	YATR	6 cut(s)	354, 462, 498, 635, 870, 1075
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	1 cut(s)	633
FauI	CCCGC	1 cut(s)	1060
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	4 cut(s)	349, 632, 650, 731
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	2 cut(s)	27, 69
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	1 cut(s)	300
GsuI	CTGGAG	2 cut(s)	272, 749
HaeIII	GGCC	3 cut(s)	174, 1012, 1052
HapII	CCGG	4 cut(s)	264, 270, 428, 716
HgaI	GACGC	1 cut(s)	364
HhaI	GCGC	1 cut(s)	521
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	1 cut(s)	637
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HindIII	AAGCTT	2 cut(s)	287, 753
HinfI	GANTC	7 cut(s)	9, 61, 575, 677, 778, 845, 1115
HpaII	CCGG	4 cut(s)	264, 270, 428, 716
HphI	GGTGA	4 cut(s)	145, 271, 584, 700
Hpy166II	GTNNAC	3 cut(s)	112, 136, 390
Hpy188I	TCNGA	9 cut(s)	123, 219, 226, 260, 380, 516, 580, 669, 702
Hpy8I	GTNNAC	3 cut(s)	112, 136, 390
Hpy99I	CGWCG	2 cut(s)	380, 793
HpyAV	CCTTC	3 cut(s)	409, 498, 532
HpyCH4III	ACNGT	4 cut(s)	247, 394, 590, 822
HpyCH4IV	ACGT	2 cut(s)	33, 791
HpyCH4V	TGCA	2 cut(s)	302, 535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	416, 1018
HpyF3I	CTNAG	3 cut(s)	19, 39, 564
HpySE526I	ACGT	2 cut(s)	33, 791
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	1 cut(s)	637
HspAI	GCGC	1 cut(s)	519
Kpn2I	TCCGGA	2 cut(s)	427, 715
Kzo9I	GATC	5 cut(s)	255, 382, 436, 1084, 1088
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	2 cut(s)	367, 516
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	2 cut(s)	187, 397
MaeI	CTAG	2 cut(s)	27, 69
MaeII	ACGT	2 cut(s)	33, 791
MaeIII	GTNAC	1 cut(s)	1035
MalI	GATC	5 cut(s)	257, 384, 438, 1086, 1090
MboI	GATC	5 cut(s)	255, 382, 436, 1084, 1088
MboII	GAAGA	9 cut(s)	113, 138, 341, 462, 781, 908, 911, 923, 926
MfeI	CAATTG	1 cut(s)	880
MluCI	AATT	4 cut(s)	198, 488, 836, 880
MluI	ACGCGT	1 cut(s)	358
MlyI	GAGTC	2 cut(s)	584, 772
MmeI	TCCRAC	2 cut(s)	358, 558
MnlI	CCTC	8 cut(s)	124, 337, 486, 501, 543, 642, 724, 1002
MroI	TCCGGA	2 cut(s)	427, 715
MroXI	GAANNNNTTC	1 cut(s)	542
MseI	TTAA	4 cut(s)	231, 723, 971, 1059
MslI	CAYNNNNRTG	1 cut(s)	638
MspA1I	CMGCKG	1 cut(s)	992
MspI	CCGG	4 cut(s)	264, 270, 428, 716
MspR9I	CCNGG	4 cut(s)	251, 264, 570, 611
MunI	CAATTG	1 cut(s)	880
MvaI	CCWGG	3 cut(s)	251, 570, 611
MvnI	CGCG	3 cut(s)	360, 521, 548
MwoI	GCNNNNNNNGC	2 cut(s)	416, 1018
NciI	CCSGG	1 cut(s)	264
NdeII	GATC	5 cut(s)	255, 382, 436, 1084, 1088
NlaIII	CATG	1 cut(s)	637
NlaIV	GGNNCC	2 cut(s)	262, 268
NruI	TCGCGA	1 cut(s)	548
NspV	TTCGAA	1 cut(s)	999
PciSI	GCTCTTC	1 cut(s)	354
PdmI	GAANNNNTTC	1 cut(s)	542
PfeI	GAWTC	5 cut(s)	9, 61, 677, 845, 1115
PflFI	GACNNNGTC	1 cut(s)	107
PfoI	TCCNGGA	1 cut(s)	249
PkrI	GCNGC	1 cut(s)	301
PleI	GAGTC	2 cut(s)	583, 772
PpsI	GAGTC	2 cut(s)	583, 772
Psp6I	CCWGG	3 cut(s)	249, 568, 609
PspGI	CCWGG	3 cut(s)	249, 568, 609
PspN4I	GGNNCC	2 cut(s)	262, 268
PspPI	GGNCC	3 cut(s)	72, 260, 1051
PsyI	GACNNNGTC	1 cut(s)	107
PvuII	CAGCTG	1 cut(s)	992
RruI	TCGCGA	1 cut(s)	548
RsaI	GTAC	2 cut(s)	161, 1099
RsaNI	GTAC	2 cut(s)	160, 1098
RseI	CAYNNNNRTG	1 cut(s)	638
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	4 cut(s)	231, 723, 971, 1059
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	5 cut(s)	255, 382, 436, 1084, 1088
Sau96I	GGNCC	3 cut(s)	72, 260, 1051
SchI	GAGTC	2 cut(s)	584, 772
ScrFI	CCNGG	4 cut(s)	251, 264, 570, 611
SfaNI	GCATC	2 cut(s)	187, 397
SfuI	TTCGAA	1 cut(s)	999
SinI	GGWCC	2 cut(s)	72, 260
SmiMI	CAYNNNNRTG	1 cut(s)	638
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	4 cut(s)	198, 488, 836, 880
SsiI	CCGC	4 cut(s)	334, 419, 617, 1067
SspMI	CTAG	2 cut(s)	27, 69
StyD4I	CCNGG	4 cut(s)	249, 262, 568, 609
TaaI	ACNGT	4 cut(s)	247, 394, 590, 822
TaiI	ACGT	2 cut(s)	36, 794
TaqI	TCGA	6 cut(s)	7, 855, 999, 1025, 1087, 1113
TasI	AATT	4 cut(s)	198, 488, 836, 880
TatI	WGTACW	2 cut(s)	159, 1097
TfiI	GAWTC	5 cut(s)	9, 61, 677, 845, 1115
Tru1I	TTAA	4 cut(s)	231, 723, 971, 1059
Tru9I	TTAA	4 cut(s)	231, 723, 971, 1059
TscAI	CASTG	2 cut(s)	244, 531
TseI	GCWGC	1 cut(s)	299
TspDTI	ATGAA	5 cut(s)	341, 909, 912, 924, 1031
TspGWI	ACGGA	1 cut(s)	447
TspRI	CASTG	2 cut(s)	244, 531
Tth111I	GACNNNGTC	1 cut(s)	107
VpaK11BI	GGWCC	2 cut(s)	72, 260
XapI	RAATTY	1 cut(s)	198
XbaI	TCTAGA	1 cut(s)	26
XmiI	GTMKAC	1 cut(s)	111
XmnI	GAANNNNTTC	1 cut(s)	542
XspI	CTAG	2 cut(s)	27, 69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.