Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0014596

Physical Location & Seq

Genomic Coordinates Reverse (-)

16812786 .. 16814302

Gene Structure 1517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G163000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGCTTCGACGCGCCAAATGTCTTTATGGTGTCATCCCCGGGCATTGTTCACTTGGGCAGCTGCAATCGACGTCCAGATATCGCTCCTATCGGAAAATCAACGGCGCAGATGACGACGGCCGTCGGAAAAGAGAGGAGGGTCAAGATGGGCATTTGCAGTTGCACAAGAGCAAAGGCCAACACCTCTTAACCAACCAACGCATTCTCGACAGCATTGTTCGAAAATCCGCAATTAAACCCACAGACACCGTCCTCGAGATCGGACCCGGCACCGGAAATCTTACCCTCAAGCTTCTGGAAGCTGCCAAGAGCGTCGTGGCAGTCGAAATTGATAAGCGGATGGTGGAGGTTCTCCAAAAACGTGTTGCGGAGTGTGGGGTTCAAGATAGGTTGACTGTTATATGTAAAGATGCACTGAAGGCGGAGTTTCCTCCTTTTGATATTGTCGTGGCGAACATTCCGTATGGAATATCTTCGCCCCTGGTGGCTAAATTGGTGTATGGGGCAAGGTCATTTCGGAGTGCCACGCTGCTACTTCAAAAGGAGTTTGCAAGGAGATTGATGGCTAAGCCTGGAGACTCTGAGTTCAACCGGTTGGCTGTGAATGTGAAGCTGGTGGTTAATGTGGAGTTTGTCATGGATGTGAGCAAGAGGGAGTTTGTTCCTTGCCCGAAAGTCGATTCGTCGGTGGTTATAATTCGTCCGAAAGCTGAAGTTCCAAACGTTAATTTGGATGAATGGTGGGCTTTTACAAAGGCTTGTTTTTGTAACAAGAATAAGACACTTGGGGCGACGTTCAAGCAAAAGAAGAAGGTGATGGAGCTGTTGCGGTTGTCCAAATTAGCAGGCTCAAATGGTGAAACTGACAATTATATTTGCAGCAACGACGACAACGGGGATGGAGGAGAGAGCAATGAAGAGGAGCTTTCTTCGTCGTCTTGCTCGGAAATGGGAGCGAGTTCCTTCAAGGAGAAGTTAATGGGGGTTCTGAAATCGGCTGATTTTGAGGACAAGCGGCCTTCAAAGCTGTCAAATGAGGAGTTGCTGCATCTGCTTGCATTGTTTAATCAAGCAGGAATATATTTTCATGATCAGTCCAAGAGTAGGAATGCTGAGAATGAATCATTTTCTGTTGCTTACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000179 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009116 GO:0009119 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016433 GO:0016740 GO:0016741 GO:0017144 GO:0022613 GO:0031167 GO:0031974 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042278 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046085 GO:0046128 GO:0046483 GO:0055086 GO:0070013 GO:0071704 GO:0071840 GO:0072521 GO:0090304 GO:0140098 GO:0140102 GO:1901135 GO:1901360 GO:1901564 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RrnaAD

Protein Analysis

382

Amino Acids

42.37

Weight (kDa)

8.94

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66360 AT5G66360
fragaria_vesca	FvH4_1g12340
malus_domestica	MD02G1137600.v1.1 MD15G1251400.v1.1
prunus_persica	Prupe.7G163000_v2.0.a1
pyrus_communis	pycom02g10890
rosa_chinensis	RchiOBHm_Chr2g0100161
rosa_laevigata	RLG00000016942
rosa_multiflora	Rmu_sc0018554.1_g000006
rosa_roxburghii	Rroxscaffold_2G00142510
rosa_rugosa	Rorug02G0086100
rosa_samantha	Rh2AG135200 Rh2BG138600 Rh2CG140400 Rh2DG140600
rosa_wichuraiana	Rw2G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	695
AatII	GACGTC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	269
AccII	CGCG	1 cut(s)	12
AciI	CCGC	6 cut(s)	228, 337, 368, 422, 829, 1015
AclI	AACGTT	1 cut(s)	723
AcoI	YGGCCR	1 cut(s)	118
AcuI	CTGAAG	2 cut(s)	437, 732
AcyI	GRCGYC	1 cut(s)	71
AfiI	CCNNNNNNNGG	2 cut(s)	272, 1104
AflIII	ACRYGT	1 cut(s)	361
AgeI	ACCGGT	1 cut(s)	591
AgsI	TTSAA	6 cut(s)	383, 539, 589, 799, 967, 1023
AjnI	CCWGG	2 cut(s)	480, 571
AluBI	AGCT	8 cut(s)	61, 292, 302, 613, 710, 823, 925, 1027
AluI	AGCT	8 cut(s)	61, 292, 302, 613, 710, 823, 925, 1027
Alw26I	GTCTC	1 cut(s)	570
Ama87I	CYCGRG	2 cut(s)	38, 254
AoxI	GGCC	3 cut(s)	118, 175, 1016
ApeKI	GCWGC	6 cut(s)	58, 61, 302, 529, 879, 1045
AsiGI	ACCGGT	1 cut(s)	591
Asp700I	GAANNNNTTC	1 cut(s)	472
AspLEI	GCGC	2 cut(s)	14, 107
AspS9I	GGNCC	1 cut(s)	263
AsuC2I	CCSGG	3 cut(s)	39, 40, 267
AsuHPI	GGTGA	2 cut(s)	826, 869
AsuII	TTCGAA	1 cut(s)	220
AvaI	CYCGRG	2 cut(s)	38, 254
AvaII	GGWCC	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	269
BbvI	GCAGC	6 cut(s)	48, 70, 289, 516, 891, 1032
BccI	CCATC	5 cut(s)	140, 334, 556, 811, 893
BceAI	ACGGC	3 cut(s)	105, 118, 133
BciT130I	CCWGG	2 cut(s)	482, 573
BclI	TGATCA	1 cut(s)	1090
BcnI	CCSGG	3 cut(s)	39, 40, 267
BcoDI	GTCTC	1 cut(s)	570
BisI	GCNGC	7 cut(s)	59, 62, 303, 530, 880, 1016, 1046
BlpI	GCTNAGC	1 cut(s)	567
BlsI	GCNGC	7 cut(s)	60, 63, 304, 531, 881, 1017, 1047
Bme1390I	CCNGG	5 cut(s)	39, 40, 267, 482, 573
Bme18I	GGWCC	1 cut(s)	263
BmeT110I	CYCGRG	2 cut(s)	38, 254
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	2 cut(s)	265, 271
BmrFI	CCNGG	5 cut(s)	39, 40, 267, 482, 573
BmsI	GCATC	2 cut(s)	400, 1057
BoxI	GACNNNNGTC	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	594
Bpu1102I	GCTNAGC	1 cut(s)	567
Bpu14I	TTCGAA	1 cut(s)	220
BpuEI	CTTGAG	1 cut(s)	272
BpuMI	CCSGG	3 cut(s)	39, 40, 267
BsaHI	GRCGYC	1 cut(s)	71
BsaJI	CCNNGG	3 cut(s)	37, 38, 480
BsaWI	WCCGGW	2 cut(s)	272, 591
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 1104
Bse118I	RCCGGY	1 cut(s)	591
Bse3DI	GCAATG	1 cut(s)	919
BseBI	CCWGG	2 cut(s)	482, 573
BseDI	CCNNGG	3 cut(s)	37, 38, 480
BseGI	GGATG	5 cut(s)	33, 345, 646, 739, 904
BseLI	CCNNNNNNNGG	2 cut(s)	272, 1104
BseMI	GCAATG	1 cut(s)	919
BseMII	CTCAG	2 cut(s)	573, 1104
BseRI	GAGGAG	4 cut(s)	149, 918, 935, 1052
BseX3I	CGGCCG	1 cut(s)	118
BseXI	GCAGC	6 cut(s)	48, 70, 289, 516, 891, 1032
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	3 cut(s)	120, 177, 1018
BshNI	GGYRCC	1 cut(s)	269
BshTI	ACCGGT	1 cut(s)	591
BsiEI	CGRYCG	1 cut(s)	121
BsiHKCI	CYCGRG	2 cut(s)	38, 254
BsiSI	CCGG	4 cut(s)	39, 267, 273, 592
BslI	CCNNNNNNNGG	2 cut(s)	272, 1104
BsmAI	GTCTC	1 cut(s)	570
BsmI	GAATGC	2 cut(s)	201, 1114
BsnI	GGCC	3 cut(s)	120, 177, 1018
BsoBI	CYCGRG	2 cut(s)	38, 254
Bsp119I	TTCGAA	1 cut(s)	220
Bsp143I	GATC	2 cut(s)	258, 1090
Bsp1720I	GCTNAGC	1 cut(s)	567
BspACI	CCGC	6 cut(s)	228, 337, 368, 422, 829, 1015
BspANI	GGCC	3 cut(s)	120, 177, 1018
BspCNI	CTCAG	2 cut(s)	574, 1105
BspFNI	CGCG	1 cut(s)	12
BspHI	TCATGA	1 cut(s)	1087
BspLI	GGNNCC	2 cut(s)	265, 271
BspT104I	TTCGAA	1 cut(s)	220
BspT107I	GGYRCC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	919
BsrFI	RCCGGY	1 cut(s)	591
BssAI	RCCGGY	1 cut(s)	591
BssECI	CCNNGG	3 cut(s)	37, 38, 480
BssMI	GATC	2 cut(s)	258, 1090
BssNI	GRCGYC	1 cut(s)	71
Bst2UI	CCWGG	2 cut(s)	482, 573
Bst4CI	ACNGT	3 cut(s)	250, 397, 1142
Bst6I	CTCTTC	1 cut(s)	912
BstACI	GRCGYC	1 cut(s)	71
BstBI	TTCGAA	1 cut(s)	220
BstC8I	GCNNGC	2 cut(s)	847, 1056
BstDEI	CTNAG	3 cut(s)	567, 582, 1113
BstF5I	GGATG	5 cut(s)	33, 345, 646, 739, 904
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	14, 107
BstKTI	GATC	2 cut(s)	261, 1093
BstMAI	GTCTC	1 cut(s)	570
BstMBI	GATC	2 cut(s)	258, 1090
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	3 cut(s)	419, 1024, 1051
BstNI	CCWGG	2 cut(s)	482, 573
BstPAI	GACNNNNGTC	1 cut(s)	120
BstSCI	CCNGG	5 cut(s)	37, 38, 265, 480, 571
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	6 cut(s)	48, 70, 289, 516, 891, 1032
BstZI	CGGCCG	1 cut(s)	118
BsuRI	GGCC	3 cut(s)	120, 177, 1018
BtsCI	GGATG	5 cut(s)	33, 345, 646, 739, 904
BtsIMutI	CAGTG	1 cut(s)	413
Cac8I	GCNNGC	2 cut(s)	847, 1056
CciI	TCATGA	1 cut(s)	1087
CfoI	GCGC	2 cut(s)	14, 107
Cfr10I	RCCGGY	1 cut(s)	591
Cfr13I	GGNCC	1 cut(s)	263
Cfr9I	CCCGGG	1 cut(s)	38
CseI	GACGC	2 cut(s)	18, 301
CspAI	ACCGGT	1 cut(s)	591
CviAII	CATG	2 cut(s)	637, 1088
DdeI	CTNAG	3 cut(s)	567, 582, 1113
DpnI	GATC	2 cut(s)	260, 1092
DpnII	GATC	2 cut(s)	258, 1090
EaeI	YGGCCR	1 cut(s)	118
EagI	CGGCCG	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	912
EarI	CTCTTC	1 cut(s)	912
EciI	GGCGGA	1 cut(s)	437
EclXI	CGGCCG	1 cut(s)	118
Eco32I	GATATC	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	263
Eco52I	CGGCCG	1 cut(s)	118
Eco57I	CTGAAG	2 cut(s)	437, 732
Eco88I	CYCGRG	2 cut(s)	38, 254
EcoRII	CCWGG	2 cut(s)	480, 571
EcoRV	GATATC	1 cut(s)	80
FaeI	CATG	2 cut(s)	640, 1091
FalI	AAGNNNNNCTT	2 cut(s)	909, 941
FatI	CATG	2 cut(s)	636, 1087
FbaI	TGATCA	1 cut(s)	1090
Fnu4HI	GCNGC	7 cut(s)	59, 62, 303, 530, 880, 1016, 1046
FokI	GGATG	5 cut(s)	20, 352, 653, 746, 911
Fsp4HI	GCNGC	7 cut(s)	59, 62, 303, 530, 880, 1016, 1046
GlaI	GCGC	2 cut(s)	13, 106
GluI	GCNGC	7 cut(s)	59, 62, 303, 530, 880, 1016, 1046
GsuI	CTGGAG	1 cut(s)	594
HaeIII	GGCC	3 cut(s)	120, 177, 1018
HapII	CCGG	4 cut(s)	39, 267, 273, 592
HgaI	GACGC	2 cut(s)	18, 301
HhaI	GCGC	2 cut(s)	14, 107
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	2 cut(s)	640, 1091
Hin6I	GCGC	2 cut(s)	12, 105
HinP1I	GCGC	2 cut(s)	12, 105
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	3 cut(s)	578, 680, 1121
HpaII	CCGG	4 cut(s)	39, 267, 273, 592
HphI	GGTGA	2 cut(s)	826, 869
Hpy166II	GTNNAC	2 cut(s)	50, 393
Hpy188I	TCNGA	8 cut(s)	93, 126, 263, 519, 583, 705, 946, 990
Hpy188III	TCNNGA	7 cut(s)	75, 143, 206, 256, 296, 383, 1088
Hpy8I	GTNNAC	2 cut(s)	50, 393
Hpy99I	CGWCG	9 cut(s)	12, 73, 119, 126, 317, 688, 796, 890, 937
HpyAV	CCTTC	4 cut(s)	412, 805, 973, 1029
HpyCH4III	ACNGT	3 cut(s)	250, 397, 1142
HpyCH4IV	ACGT	4 cut(s)	71, 361, 723, 794
HpyCH4V	TGCA	8 cut(s)	64, 157, 163, 413, 551, 879, 1048, 1058
HpyF10VI	GCNNNNNNNGC	3 cut(s)	419, 1024, 1051
HpyF3I	CTNAG	3 cut(s)	567, 582, 1113
HpySE526I	ACGT	4 cut(s)	71, 361, 723, 794
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	2 cut(s)	640, 1091
HspAI	GCGC	2 cut(s)	12, 105
Ksp22I	TGATCA	1 cut(s)	1090
Kzo9I	GATC	2 cut(s)	258, 1090
LmnI	GCTCC	4 cut(s)	89, 820, 922, 953
Lsp1109I	GCAGC	6 cut(s)	48, 70, 289, 516, 891, 1032
LweI	GCATC	2 cut(s)	400, 1057
MaeII	ACGT	4 cut(s)	71, 361, 723, 794
MaeIII	GTNAC	1 cut(s)	767
MalI	GATC	2 cut(s)	260, 1092
MboI	GATC	2 cut(s)	258, 1090
MboII	GAAGA	4 cut(s)	465, 820, 921, 929
MluCI	AATT	7 cut(s)	231, 327, 491, 696, 727, 839, 868
MlyI	GAGTC	1 cut(s)	572
MmeI	TCCRAC	1 cut(s)	104
MroXI	GAANNNNTTC	1 cut(s)	472
MseI	TTAA	6 cut(s)	188, 234, 621, 726, 977, 1065
MslI	CAYNNNNRTG	1 cut(s)	641
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	4 cut(s)	39, 267, 273, 592
MspR9I	CCNGG	5 cut(s)	39, 40, 267, 482, 573
Mva1269I	GAATGC	2 cut(s)	201, 1114
MvaI	CCWGG	2 cut(s)	482, 573
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	3 cut(s)	419, 1024, 1051
NciI	CCSGG	3 cut(s)	39, 40, 267
NdeII	GATC	2 cut(s)	258, 1090
NlaIII	CATG	2 cut(s)	640, 1091
NlaIV	GGNNCC	2 cut(s)	265, 271
NspV	TTCGAA	1 cut(s)	220
PaeR7I	CTCGAG	1 cut(s)	254
PagI	TCATGA	1 cut(s)	1087
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PctI	GAATGC	2 cut(s)	201, 1114
PdmI	GAANNNNTTC	1 cut(s)	472
PfeI	GAWTC	2 cut(s)	680, 1121
PflFI	GACNNNGTC	1 cut(s)	248
PinAI	ACCGGT	1 cut(s)	591
PkrI	GCNGC	7 cut(s)	60, 63, 304, 531, 881, 1017, 1047
PleI	GAGTC	1 cut(s)	572
PpsI	GAGTC	1 cut(s)	572
PshAI	GACNNNNGTC	1 cut(s)	120
PsiI	TTATAA	1 cut(s)	695
Psp1406I	AACGTT	1 cut(s)	723
Psp6I	CCWGG	2 cut(s)	480, 571
PspGI	CCWGG	2 cut(s)	480, 571
PspN4I	GGNNCC	2 cut(s)	265, 271
PspPI	GGNCC	1 cut(s)	263
PsyI	GACNNNGTC	1 cut(s)	248
PvuII	CAGCTG	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	641
SaqAI	TTAA	6 cut(s)	188, 234, 621, 726, 977, 1065
SatI	GCNGC	7 cut(s)	59, 62, 303, 530, 880, 1016, 1046
Sau3AI	GATC	2 cut(s)	258, 1090
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	5 cut(s)	39, 40, 267, 482, 573
SfaNI	GCATC	2 cut(s)	400, 1057
Sfr274I	CTCGAG	1 cut(s)	254
SfuI	TTCGAA	1 cut(s)	220
SinI	GGWCC	1 cut(s)	263
SlaI	CTCGAG	1 cut(s)	254
SmaI	CCCGGG	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	641
SmlI	CTYRAG	2 cut(s)	254, 287
SmoI	CTYRAG	2 cut(s)	254, 287
Sse9I	AATT	7 cut(s)	231, 327, 491, 696, 727, 839, 868
SsiI	CCGC	6 cut(s)	228, 337, 368, 422, 829, 1015
StyD4I	CCNGG	5 cut(s)	37, 38, 265, 480, 571
TaaI	ACNGT	3 cut(s)	250, 397, 1142
TaiI	ACGT	4 cut(s)	74, 364, 726, 797
TaqI	TCGA	7 cut(s)	7, 68, 207, 220, 255, 324, 678
TasI	AATT	7 cut(s)	231, 327, 491, 696, 727, 839, 868
TauI	GCSGC	1 cut(s)	1018
TfiI	GAWTC	2 cut(s)	680, 1121
Tru1I	TTAA	6 cut(s)	188, 234, 621, 726, 977, 1065
Tru9I	TTAA	6 cut(s)	188, 234, 621, 726, 977, 1065
TscAI	CASTG	1 cut(s)	420
TseI	GCWGC	6 cut(s)	58, 61, 302, 529, 879, 1045
TspDTI	ATGAA	4 cut(s)	750, 930, 1076, 1134
TspGWI	ACGGA	1 cut(s)	450
TspMI	CCCGGG	1 cut(s)	38
TspRI	CASTG	1 cut(s)	420
Tth111I	GACNNNGTC	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XhoI	CTCGAG	1 cut(s)	254
XmaI	CCCGGG	1 cut(s)	38
XmnI	GAANNNNTTC	1 cut(s)	472
ZraI	GACGTC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.