Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0014596

Physical Location & Seq

Genomic Coordinates Forward (+)

21158280 .. 21159593

Gene Structure 1314 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1251400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGTGGAGGTTCTCCAAAAACGTGTTGAGGAGAGTGGGGTTCAAGACCGTTTGGCTGTTATCAATAAAGATGCATTGAAGGCGGAGTTTCCTCCGTTTGATCTTGTTGTGGCGAACATTCCATACGGCATATCTTCGCCTCTGGTAGCTAAATTGGTTTACGGGGCAAGGCTGTTTCGTAGCACCACACTGCTGCTGCAAAGGGAGTTTGCGAGGAGATTGTTGGCTAAGCCAGGCGACTCGGAGTTCAACCGCTTGGCTGTGAATGTGAACCTGGTGGCCGATGTCGAGTTTGTCATGGATGTGAGCAAGAAGGAGTTTGTCCCGTGCCCAGAAGTTGATTCGTCTGTTGTTATAATCCGCCCGAAAGCTGAAGTTCCGAATATTAATCTGGACGAGTGGTGGGCTTTCATAAAAGCTTGTTTCTGTAAGAAGAACAGAACGCTTGGGGCAACCTTCAAACAAAAGAAGAAGGTGATGGAGCTACTGGAGATGTTCAATTTGGCAGGCTTAAATGGTGAAGGCAAAGATTATATTAGTAGCAGCGACAACGATGACGATGAAGGAAAGAGTGATGAAGAGGAGTTTTCTCCGTCTTCTTGCTCGGAAATAGGGGCGAGTTCTTTCAAGGAGAAGTTAATTGGGGTTCTGAAATCAGGTAATTTTGAAGACAAGCGGCCTTCAAAGCTGTCGAATGAGGAGTTATTGCATTTACTGGCAATGTTTAATCAAAAGGGAATTTACTTTCATGATCACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000179 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009116 GO:0009119 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016433 GO:0016740 GO:0016741 GO:0017144 GO:0022613 GO:0031167 GO:0031974 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042278 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046085 GO:0046128 GO:0046483 GO:0055086 GO:0070013 GO:0071704 GO:0071840 GO:0072521 GO:0090304 GO:0140098 GO:0140102 GO:1901135 GO:1901360 GO:1901564 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RrnaAD

Protein Analysis

254

Amino Acids

28.41

Weight (kDa)

5.45

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RrnaAD	PF00398	1 - 162	9.7e-37	Ribosomal RNA adenine dimethylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0014596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66360 AT5G66360
fragaria_vesca	FvH4_1g12340
malus_domestica	MD02G1137600.v1.1 MD15G1251400.v1.1
prunus_persica	Prupe.7G163000_v2.0.a1
pyrus_communis	pycom02g10890
rosa_chinensis	RchiOBHm_Chr2g0100161
rosa_laevigata	RLG00000016942
rosa_multiflora	Rmu_sc0018554.1_g000006
rosa_roxburghii	Rroxscaffold_2G00142510
rosa_rugosa	Rorug02G0086100
rosa_samantha	Rh2AG135200 Rh2BG138600 Rh2CG140400 Rh2DG140600
rosa_wichuraiana	Rw2G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
AciI	CCGC	4 cut(s)	83, 253, 361, 676
AcoI	YGGCCR	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	738
AcuI	CTGAAG	1 cut(s)	393
AflIII	ACRYGT	1 cut(s)	22
AgsI	TTSAA	8 cut(s)	44, 79, 250, 460, 499, 628, 668, 684
AjnI	CCWGG	2 cut(s)	232, 273
AluBI	AGCT	5 cut(s)	149, 371, 419, 484, 688
AluI	AGCT	5 cut(s)	149, 371, 419, 484, 688
AoxI	GGCC	2 cut(s)	279, 677
ApeKI	GCWGC	3 cut(s)	193, 196, 543
ApoI	RAATTY	1 cut(s)	738
AseI	ATTAAT	1 cut(s)	387
AsuHPI	GGTGA	2 cut(s)	487, 530
BaeGI	GKGCMC	1 cut(s)	332
BbsI	GAAGAC	2 cut(s)	588, 675
BbvI	GCAGC	3 cut(s)	180, 183, 555
BccI	CCATC	1 cut(s)	472
BceAI	ACGGC	1 cut(s)	142
BciT130I	CCWGG	2 cut(s)	234, 275
BclI	TGATCA	1 cut(s)	751
BisI	GCNGC	4 cut(s)	194, 197, 544, 677
BlpI	GCTNAGC	1 cut(s)	228
BlsI	GCNGC	4 cut(s)	195, 198, 545, 678
Bme1390I	CCNGG	2 cut(s)	234, 275
BmrFI	CCNGG	2 cut(s)	234, 275
BmsI	GCATC	1 cut(s)	61
BpiI	GAAGAC	2 cut(s)	588, 675
BpmI	CTGGAG	1 cut(s)	509
Bpu1102I	GCTNAGC	1 cut(s)	228
Bse1I	ACTGG	2 cut(s)	492, 720
Bse3DI	GCAATG	1 cut(s)	726
BseBI	CCWGG	2 cut(s)	234, 275
BseGI	GGATG	1 cut(s)	307
BseMI	GCAATG	1 cut(s)	726
BseNI	ACTGG	2 cut(s)	492, 720
BseRI	GAGGAG	4 cut(s)	44, 229, 596, 713
BseSI	GKGCMC	1 cut(s)	332
BseXI	GCAGC	3 cut(s)	180, 183, 555
BshFI	GGCC	2 cut(s)	281, 679
BslFI	GGGAC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	2 cut(s)	281, 679
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	2 cut(s)	100, 751
Bsp1720I	GCTNAGC	1 cut(s)	228
BspACI	CCGC	4 cut(s)	83, 253, 361, 676
BspANI	GGCC	2 cut(s)	281, 679
BspHI	TCATGA	1 cut(s)	748
BsrDI	GCAATG	1 cut(s)	726
BsrI	ACTGG	2 cut(s)	492, 720
BssMI	GATC	2 cut(s)	100, 751
Bst2UI	CCWGG	2 cut(s)	234, 275
Bst4CI	ACNGT	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	573
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	2 cut(s)	103, 754
BstMBI	GATC	2 cut(s)	100, 751
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 685
BstNI	CCWGG	2 cut(s)	234, 275
BstSCI	CCNGG	2 cut(s)	232, 273
BstSLI	GKGCMC	1 cut(s)	332
BstV1I	GCAGC	3 cut(s)	180, 183, 555
BstV2I	GAAGAC	2 cut(s)	588, 675
BsuRI	GGCC	2 cut(s)	281, 679
BtsCI	GGATG	1 cut(s)	307
BtsI	GCAGTG	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	508
CciI	TCATGA	1 cut(s)	748
CsiI	ACCWGGT	1 cut(s)	273
CviAII	CATG	2 cut(s)	298, 749
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	2 cut(s)	102, 753
DpnII	GATC	2 cut(s)	100, 751
EaeI	YGGCCR	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
EciI	GGCGGA	2 cut(s)	98, 350
Eco57I	CTGAAG	1 cut(s)	393
EcoRII	CCWGG	2 cut(s)	232, 273
EcoT22I	ATGCAT	1 cut(s)	76
FaeI	CATG	2 cut(s)	301, 752
FaiI	YATR	7 cut(s)	124, 131, 299, 356, 413, 534, 750
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	2 cut(s)	297, 748
FbaI	TGATCA	1 cut(s)	751
Fnu4HI	GCNGC	4 cut(s)	194, 197, 544, 677
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	4 cut(s)	194, 197, 544, 677
GluI	GCNGC	4 cut(s)	194, 197, 544, 677
GsuI	CTGGAG	1 cut(s)	509
HaeIII	GGCC	2 cut(s)	281, 679
Hin1II	CATG	2 cut(s)	301, 752
HindIII	AAGCTT	1 cut(s)	417
HinfI	GANTC	2 cut(s)	239, 341
HphI	GGTGA	2 cut(s)	487, 530
Hpy166II	GTNNAC	2 cut(s)	160, 271
Hpy188I	TCNGA	4 cut(s)	244, 381, 607, 651
Hpy188III	TCNNGA	3 cut(s)	44, 392, 749
Hpy8I	GTNNAC	2 cut(s)	160, 271
HpyAV	CCTTC	7 cut(s)	73, 307, 466, 466, 515, 557, 690
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	3 cut(s)	74, 199, 709
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 685
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	2 cut(s)	301, 752
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	2 cut(s)	100, 751
LmnI	GCTCC	1 cut(s)	481
Lsp1109I	GCAGC	3 cut(s)	180, 183, 555
LweI	GCATC	1 cut(s)	61
MabI	ACCWGGT	1 cut(s)	273
MaeII	ACGT	1 cut(s)	22
MalI	GATC	2 cut(s)	102, 753
MboI	GATC	2 cut(s)	100, 751
MboII	GAAGA	6 cut(s)	126, 445, 481, 588, 590, 680
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	5 cut(s)	152, 499, 639, 661, 738
MlyI	GAGTC	1 cut(s)	233
MnlI	CCTC	6 cut(s)	22, 102, 150, 207, 574, 691
Mph1103I	ATGCAT	1 cut(s)	76
MseI	TTAA	5 cut(s)	387, 512, 638, 726, 760
MslI	CAYNNNNRTG	1 cut(s)	302
MspR9I	CCNGG	2 cut(s)	234, 275
MvaI	CCWGG	2 cut(s)	234, 275
MwoI	GCNNNNNNNGC	2 cut(s)	80, 685
NdeII	GATC	2 cut(s)	100, 751
NlaIII	CATG	2 cut(s)	301, 752
NsiI	ATGCAT	1 cut(s)	76
PagI	TCATGA	1 cut(s)	748
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	4 cut(s)	195, 198, 545, 678
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PshBI	ATTAAT	1 cut(s)	387
PsiI	TTATAA	1 cut(s)	356
Psp6I	CCWGG	2 cut(s)	232, 273
PspGI	CCWGG	2 cut(s)	232, 273
PsrI	GAACNNNNNNTAC	2 cut(s)	107, 139
RseI	CAYNNNNRTG	1 cut(s)	302
SaqAI	TTAA	5 cut(s)	387, 512, 638, 726, 760
SatI	GCNGC	4 cut(s)	194, 197, 544, 677
Sau3AI	GATC	2 cut(s)	100, 751
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	2 cut(s)	234, 275
SduI	GDGCHC	1 cut(s)	332
SexAI	ACCWGGT	1 cut(s)	273
SfaNI	GCATC	1 cut(s)	61
SmiMI	CAYNNNNRTG	1 cut(s)	302
Sse9I	AATT	5 cut(s)	152, 499, 639, 661, 738
SsiI	CCGC	4 cut(s)	83, 253, 361, 676
SspI	AATATT	1 cut(s)	385
StyD4I	CCNGG	2 cut(s)	232, 273
TaaI	ACNGT	1 cut(s)	50
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	2 cut(s)	288, 692
TasI	AATT	5 cut(s)	152, 499, 639, 661, 738
TauI	GCSGC	1 cut(s)	679
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	5 cut(s)	387, 512, 638, 726, 760
Tru9I	TTAA	5 cut(s)	387, 512, 638, 726, 760
TscAI	CASTG	1 cut(s)	195
TseI	GCWGC	3 cut(s)	193, 196, 543
TspDTI	ATGAA	4 cut(s)	400, 576, 591, 737
TspGWI	ACGGA	2 cut(s)	84, 582
TspRI	CASTG	1 cut(s)	195
VspI	ATTAAT	1 cut(s)	387
XapI	RAATTY	1 cut(s)	738
Zsp2I	ATGCAT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.