Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014596

Physical Location & Seq

Genomic Coordinates Forward (+)

80588020 .. 80589369

Gene Structure 1350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGCTTCGCTTCTCAAGCTCAGTTTCTAGACTCATCCTAAAGCAATATCCAGTTCGTTTGATTCACGCTAGGTCCAGAAATCGTTGCTATCCCGATGGAGAAGACGATGGCGATAAGGCTCGGAAAAGAGAGGTGAACAAAGATGGGTATTTTCAATTGTACAAGAGCAAAGGCCAGCACCTCTTGACTAATCAACGCATTCTTGACAGCATTGTTCGGAAATCGGATATTAAACCCACTGACACTGTCCTAGAGATCGGACCCGGCACCGGAAATCTCACCCTGAAGCTTCTGGAAGCTGCAAACAGCGTTGTGGCTTTTGAGATTGACAAGCGGATGGTGGAGGTTCTTCACAAACGTGTTGTGGAGCGCGGCGTTGATGATCGGCTGACGGTTGTGTGTGAAGATGCGTTGAAGGCGGAGTTTCCGGAATTTGATCTTGTTGTGGCGAACATTCCGTACGGGATATCTTCGCCTCTTGTGGCGAAATTGGTGTATGGGGAAAGGCGGTTTCGGAGTGCCACGCTGCTACTGCAGAAAGAGTTTGCGAGGAGATTGTTGGCTAAGCCTGGTGACTCGGAGTTCAACCGCTTGGCTGTGAATGTGAGCCTGGTGGCGGATGTGGAGTTTGTCATGGATGTGAGCAAGAGGGAGTTTGTTCCTTGTCCGAAAGTGGATTCGTCCGTGGTTATTATTCGTCCGAAAGCTGAAGTTCCAGATGTTAATCTGGACGAATGGTGTGCTTTTACGAAAGCTTGTTTTGGCAAGAAGAATAAGACACTTGGAGCGACGTTCAAGCAAAAGAAGAAGGTGGTGGAGCTATTAGCGTTGTCCAAATTGACAGAATTAAATGCCGAAACTGAATACTATATTGGTAGCAACCACGTAGACGATGAAGAAAAAAGTGATGAAGAAGAGGAGTGTTCATCTGCTTGCTCGGAAATGGGAGGAGCTAGTTCTTTCAAGGAGAAGTTGATGGGGGTTCTAAAATCAGCTGATTTCGAAAACAAGAGGCCTTCGAAGCTGTCGAATGACGAGTTACTTCATCTACTTGCACTATTGAATCAAGCGGGAATATATTTTCGTGATCGGTCCAAGAATACAAGTGTGGTGATTGAATCATTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000179 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009116 GO:0009119 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016433 GO:0016740 GO:0016741 GO:0017144 GO:0022613 GO:0031167 GO:0031974 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042278 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046085 GO:0046128 GO:0046483 GO:0055086 GO:0070013 GO:0071704 GO:0071840 GO:0072521 GO:0090304 GO:0140098 GO:0140102 GO:1901135 GO:1901360 GO:1901564 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RrnaAD

Protein Analysis

376

Amino Acids

42.35

Weight (kDa)

7.55

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RrnaAD	PF00398	54 - 279	4.1e-62	Ribosomal RNA adenine dimethylase
Methyltransf_25	PF13649	83 - 151	2.1e-10	Methyltransferase domain
Methyltransf_11	PF08241	84 - 151	6.7e-08	Methyltransferase domain
Methyltransf_12	PF08242	84 - 151	7.9e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66360 AT5G66360
fragaria_vesca	FvH4_1g12340
malus_domestica	MD02G1137600.v1.1 MD15G1251400.v1.1
prunus_persica	Prupe.7G163000_v2.0.a1
pyrus_communis	pycom02g10890
rosa_chinensis	RchiOBHm_Chr2g0100161
rosa_laevigata	RLG00000016942
rosa_multiflora	Rmu_sc0018554.1_g000006
rosa_roxburghii	Rroxscaffold_2G00142510
rosa_rugosa	Rorug02G0086100
rosa_samantha	Rh2AG135200 Rh2BG138600 Rh2CG140400 Rh2DG140600
rosa_wichuraiana	Rw2G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	266
AccI	GTMKAC	1 cut(s)	888
AccII	CGCG	1 cut(s)	372
AccIII	TCCGGA	1 cut(s)	427
AciI	CCGC	7 cut(s)	334, 372, 419, 508, 589, 617, 1070
AcsI	RAATTY	1 cut(s)	431
AcuI	CTGAAG	2 cut(s)	305, 729
AfaI	GTAC	2 cut(s)	161, 461
AfiI	CCNNNNNNNGG	2 cut(s)	269, 616
AflIII	ACRYGT	1 cut(s)	358
AgsI	TTSAA	7 cut(s)	155, 415, 586, 796, 964, 1063, 1118
AjnI	CCWGG	2 cut(s)	568, 609
AjuI	GAANNNNNNNTTGG	2 cut(s)	855, 887
AleI	CACNNNNGTG	1 cut(s)	357
AluBI	AGCT	9 cut(s)	18, 289, 299, 707, 755, 820, 953, 995, 1024
AluI	AGCT	9 cut(s)	18, 289, 299, 707, 755, 820, 953, 995, 1024
Aor13HI	TCCGGA	1 cut(s)	427
AoxI	GGCC	2 cut(s)	172, 1013
ApeKI	GCWGC	2 cut(s)	299, 526
ApoI	RAATTY	1 cut(s)	431
AspLEI	GCGC	1 cut(s)	372
AspS9I	GGNCC	3 cut(s)	72, 260, 1092
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	4 cut(s)	145, 271, 584, 1123
AsuII	TTCGAA	2 cut(s)	1002, 1019
AvaII	GGWCC	3 cut(s)	72, 260, 1092
BanI	GGYRCC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	286, 513
BccI	CCATC	5 cut(s)	89, 101, 137, 331, 970
BcgI	CGANNNNNNTGC	2 cut(s)	722, 756
BciT130I	CCWGG	2 cut(s)	570, 611
BcnI	CCSGG	1 cut(s)	264
BfaI	CTAG	4 cut(s)	27, 69, 251, 954
BfmI	CTRYAG	1 cut(s)	533
BisI	GCNGC	3 cut(s)	300, 373, 527
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	3 cut(s)	301, 374, 528
Bme1390I	CCNGG	3 cut(s)	264, 570, 611
Bme18I	GGWCC	3 cut(s)	72, 260, 1092
BmgT120I	GGNCC	3 cut(s)	72, 260, 1092
BmiI	GGNNCC	2 cut(s)	262, 268
BmrFI	CCNGG	3 cut(s)	264, 570, 611
BmsI	GCATC	1 cut(s)	397
BpiI	GAAGAC	1 cut(s)	108
Bpu1102I	GCTNAGC	1 cut(s)	564
Bpu14I	TTCGAA	2 cut(s)	1002, 1019
BpuMI	CCSGG	1 cut(s)	264
BsaAI	YACGTR	1 cut(s)	886
BsaBI	GATNNNNATC	1 cut(s)	723
BsaJI	CCNNGG	1 cut(s)	684
BsaWI	WCCGGW	2 cut(s)	269, 427
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 616
Bse1I	ACTGG	1 cut(s)	50
Bse8I	GATNNNNATC	1 cut(s)	723
BseAI	TCCGGA	1 cut(s)	427
BseBI	CCWGG	2 cut(s)	570, 611
BseDI	CCNNGG	1 cut(s)	684
BseGI	GGATG	4 cut(s)	33, 342, 625, 643
BseJI	GATNNNNATC	1 cut(s)	723
BseLI	CCNNNNNNNGG	2 cut(s)	269, 616
BseMII	CTCAG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	3 cut(s)	565, 932, 963
BseXI	GCAGC	2 cut(s)	286, 513
Bsh1236I	CGCG	1 cut(s)	372
BshFI	GGCC	2 cut(s)	174, 1015
BshNI	GGYRCC	1 cut(s)	266
BsiSI	CCGG	3 cut(s)	264, 270, 428
BsiWI	CGTACG	1 cut(s)	459
BslI	CCNNNNNNNGG	2 cut(s)	269, 616
BsmI	GAATGC	1 cut(s)	198
BsnI	GGCC	2 cut(s)	174, 1015
Bsp119I	TTCGAA	2 cut(s)	1002, 1019
Bsp13I	TCCGGA	1 cut(s)	427
Bsp1407I	TGTACA	1 cut(s)	159
Bsp143I	GATC	4 cut(s)	255, 382, 436, 1087
Bsp1720I	GCTNAGC	1 cut(s)	564
BspACI	CCGC	7 cut(s)	334, 372, 419, 508, 589, 617, 1070
BspANI	GGCC	2 cut(s)	174, 1015
BspCNI	CTCAG	1 cut(s)	32
BspEI	TCCGGA	1 cut(s)	427
BspFNI	CGCG	1 cut(s)	372
BspLI	GGNNCC	2 cut(s)	262, 268
BspMAI	CTGCAG	1 cut(s)	537
BspT104I	TTCGAA	2 cut(s)	1002, 1019
BspT107I	GGYRCC	1 cut(s)	266
BsrGI	TGTACA	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	684
BssMI	GATC	4 cut(s)	255, 382, 436, 1087
Bst2UI	CCWGG	2 cut(s)	570, 611
Bst4CI	ACNGT	2 cut(s)	247, 394
Bst6I	CTCTTC	1 cut(s)	909
BstAUI	TGTACA	1 cut(s)	159
BstBAI	YACGTR	1 cut(s)	886
BstBI	TTCGAA	2 cut(s)	1002, 1019
BstC8I	GCNNGC	2 cut(s)	176, 934
BstDEI	CTNAG	2 cut(s)	19, 564
BstDSI	CCRYGG	1 cut(s)	684
BstF5I	GGATG	4 cut(s)	33, 342, 625, 643
BstFNI	CGCG	1 cut(s)	372
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	4 cut(s)	258, 385, 439, 1090
BstMBI	GATC	4 cut(s)	255, 382, 436, 1087
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 416, 532, 1021
BstNI	CCWGG	2 cut(s)	570, 611
BstSCI	CCNGG	3 cut(s)	262, 568, 609
BstSFI	CTRYAG	1 cut(s)	533
BstUI	CGCG	1 cut(s)	372
BstV1I	GCAGC	2 cut(s)	286, 513
BstV2I	GAAGAC	1 cut(s)	108
BsuRI	GGCC	2 cut(s)	174, 1015
BtgI	CCRYGG	1 cut(s)	684
BtsCI	GGATG	4 cut(s)	33, 342, 625, 643
BtsIMutI	CAGTG	2 cut(s)	237, 243
Cac8I	GCNNGC	2 cut(s)	176, 934
CfoI	GCGC	1 cut(s)	372
Cfr13I	GGNCC	3 cut(s)	72, 260, 1092
Csp6I	GTAC	2 cut(s)	160, 460
CviAII	CATG	1 cut(s)	634
CviQI	GTAC	2 cut(s)	160, 460
DdeI	CTNAG	2 cut(s)	19, 564
DpnI	GATC	4 cut(s)	257, 384, 438, 1089
DpnII	GATC	4 cut(s)	255, 382, 436, 1087
Eam1104I	CTCTTC	1 cut(s)	909
EarI	CTCTTC	1 cut(s)	909
EciI	GGCGGA	2 cut(s)	434, 632
Eco147I	AGGCCT	1 cut(s)	1015
Eco32I	GATATC	1 cut(s)	468
Eco47I	GGWCC	3 cut(s)	72, 260, 1092
Eco57I	CTGAAG	2 cut(s)	305, 729
EcoRII	CCWGG	2 cut(s)	568, 609
EcoRV	GATATC	1 cut(s)	468
FaeI	CATG	1 cut(s)	637
FaiI	YATR	4 cut(s)	498, 635, 870, 1078
FatI	CATG	1 cut(s)	633
FauI	CCCGC	1 cut(s)	1063
FblI	GTMKAC	1 cut(s)	888
Fnu4HI	GCNGC	3 cut(s)	300, 373, 527
FokI	GGATG	4 cut(s)	20, 349, 632, 650
Fsp4HI	GCNGC	3 cut(s)	300, 373, 527
FspBI	CTAG	4 cut(s)	27, 69, 251, 954
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	3 cut(s)	300, 373, 527
HaeIII	GGCC	2 cut(s)	174, 1015
HapII	CCGG	3 cut(s)	264, 270, 428
HhaI	GCGC	1 cut(s)	372
Hin1II	CATG	1 cut(s)	637
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HindIII	AAGCTT	2 cut(s)	287, 753
HinfI	GANTC	6 cut(s)	30, 61, 575, 677, 1063, 1118
HpaII	CCGG	3 cut(s)	264, 270, 428
HphI	GGTGA	4 cut(s)	145, 271, 584, 1123
Hpy166II	GTNNAC	2 cut(s)	136, 889
Hpy188I	TCNGA	9 cut(s)	123, 219, 226, 260, 516, 580, 669, 702, 940
Hpy8I	GTNNAC	2 cut(s)	136, 889
Hpy99I	CGWCG	1 cut(s)	793
HpyAV	CCTTC	3 cut(s)	409, 802, 1026
HpyCH4III	ACNGT	2 cut(s)	247, 394
HpyCH4IV	ACGT	3 cut(s)	358, 791, 885
HpyCH4V	TGCA	3 cut(s)	302, 535, 1055
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 416, 532, 1021
HpyF3I	CTNAG	2 cut(s)	19, 564
HpySE526I	ACGT	3 cut(s)	358, 791, 885
Hsp92II	CATG	1 cut(s)	637
HspAI	GCGC	1 cut(s)	370
Kpn2I	TCCGGA	1 cut(s)	427
Kzo9I	GATC	4 cut(s)	255, 382, 436, 1087
LmnI	GCTCC	4 cut(s)	367, 785, 817, 950
Lsp1109I	GCAGC	2 cut(s)	286, 513
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	4 cut(s)	27, 69, 251, 954
MaeII	ACGT	3 cut(s)	358, 791, 885
MaeIII	GTNAC	2 cut(s)	572, 1038
MalI	GATC	4 cut(s)	257, 384, 438, 1089
MboI	GATC	4 cut(s)	255, 382, 436, 1087
MboII	GAAGA	9 cut(s)	113, 341, 416, 462, 781, 817, 908, 923, 926
MfeI	CAATTG	1 cut(s)	155
MluCI	AATT	5 cut(s)	155, 431, 488, 836, 845
MlyI	GAGTC	2 cut(s)	24, 569
MnlI	CCTC	9 cut(s)	124, 191, 337, 486, 543, 642, 910, 941, 1005
MroI	TCCGGA	1 cut(s)	427
MseI	TTAA	3 cut(s)	231, 723, 848
MslI	CAYNNNNRTG	3 cut(s)	357, 638, 1126
MspA1I	CMGCKG	1 cut(s)	995
MspI	CCGG	3 cut(s)	264, 270, 428
MspR9I	CCNGG	3 cut(s)	264, 570, 611
MunI	CAATTG	1 cut(s)	155
Mva1269I	GAATGC	1 cut(s)	198
MvaI	CCWGG	2 cut(s)	570, 611
MvnI	CGCG	1 cut(s)	372
MwoI	GCNNNNNNNGC	4 cut(s)	15, 416, 532, 1021
NciI	CCSGG	1 cut(s)	264
NdeII	GATC	4 cut(s)	255, 382, 436, 1087
NlaIII	CATG	1 cut(s)	637
NlaIV	GGNNCC	2 cut(s)	262, 268
NmuCI	GTSAC	1 cut(s)	572
NspV	TTCGAA	2 cut(s)	1002, 1019
OliI	CACNNNNGTG	1 cut(s)	357
PceI	AGGCCT	1 cut(s)	1015
PcsI	WCGNNNNNNNCGW	1 cut(s)	1025
PctI	GAATGC	1 cut(s)	198
PfeI	GAWTC	4 cut(s)	61, 677, 1063, 1118
Pfl23II	CGTACG	1 cut(s)	459
PflFI	GACNNNGTC	1 cut(s)	245
PkrI	GCNGC	3 cut(s)	301, 374, 528
PleI	GAGTC	2 cut(s)	24, 569
PpsI	GAGTC	2 cut(s)	24, 569
Ppu21I	YACGTR	1 cut(s)	886
Psp6I	CCWGG	2 cut(s)	568, 609
PspGI	CCWGG	2 cut(s)	568, 609
PspLI	CGTACG	1 cut(s)	459
PspN4I	GGNNCC	2 cut(s)	262, 268
PspPI	GGNCC	3 cut(s)	72, 260, 1092
PsrI	GAACNNNNNNTAC	2 cut(s)	443, 475
PstI	CTGCAG	1 cut(s)	537
PsyI	GACNNNGTC	1 cut(s)	245
PvuII	CAGCTG	1 cut(s)	995
RsaI	GTAC	2 cut(s)	161, 461
RsaNI	GTAC	2 cut(s)	160, 460
RseI	CAYNNNNRTG	3 cut(s)	357, 638, 1126
SaqAI	TTAA	3 cut(s)	231, 723, 848
SatI	GCNGC	3 cut(s)	300, 373, 527
Sau3AI	GATC	4 cut(s)	255, 382, 436, 1087
Sau96I	GGNCC	3 cut(s)	72, 260, 1092
SchI	GAGTC	2 cut(s)	24, 569
ScrFI	CCNGG	3 cut(s)	264, 570, 611
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	533
SfuI	TTCGAA	2 cut(s)	1002, 1019
SinI	GGWCC	3 cut(s)	72, 260, 1092
SmiMI	CAYNNNNRTG	3 cut(s)	357, 638, 1126
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	5 cut(s)	155, 431, 488, 836, 845
SseBI	AGGCCT	1 cut(s)	1015
SsiI	CCGC	7 cut(s)	334, 372, 419, 508, 589, 617, 1070
SspMI	CTAG	4 cut(s)	27, 69, 251, 954
StuI	AGGCCT	1 cut(s)	1015
StyD4I	CCNGG	3 cut(s)	262, 568, 609
TaaI	ACNGT	2 cut(s)	247, 394
TaiI	ACGT	3 cut(s)	361, 794, 888
TaqI	TCGA	3 cut(s)	1002, 1019, 1028
TaqII	GACCGA	1 cut(s)	1080
TasI	AATT	5 cut(s)	155, 431, 488, 836, 845
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	1 cut(s)	375
TfiI	GAWTC	4 cut(s)	61, 677, 1063, 1118
Tru1I	TTAA	3 cut(s)	231, 723, 848
Tru9I	TTAA	3 cut(s)	231, 723, 848
TscAI	CASTG	2 cut(s)	244, 250
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	2 cut(s)	299, 526
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	4 cut(s)	909, 915, 924, 1034
TspGWI	ACGGA	2 cut(s)	447, 673
TspRI	CASTG	2 cut(s)	244, 250
Tth111I	GACNNNGTC	1 cut(s)	245
VpaK11BI	GGWCC	3 cut(s)	72, 260, 1092
XapI	RAATTY	1 cut(s)	431
XbaI	TCTAGA	1 cut(s)	26
XmiI	GTMKAC	1 cut(s)	888
XspI	CTAG	4 cut(s)	27, 69, 251, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.