Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0014596

Physical Location & Seq

Genomic Coordinates Forward (+)

7683582 .. 7684830

Gene Structure 1249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g10890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGCTTCGAGTCCTAAAACCTCTTTCTGGATTCAGCCCCAAGCAACAATCAATTGGGCAGCTGCAATCGAGGTACAGATATCGCCGCCACCCGAAAAACGATGGCGGCGGCGGCGGCGTTTGGAAAACAGAGGAGAAGAAGGATGGTTATTTGCGGTTGCACAAGAGCAAAGGGCAGCACCTCTTAACCAATCAACGAATTCTCGACAGTATTGTTCGAAAATCCGCAATAAAACCCACCGACACCGTCCTCGAGATCGGACCCGGCACCGGAAATCTCACCCTCAAGCTTCTAGAAGCCGCCCAGAGGGTCGTCGCCGTCGAACTTGATAAGCGGATGGTGGAGGTTCTTCAAAAGCGAGTTGCGGAGAGTGGGGTTCAAGATCGTTTGACTGTTATCTGTAAAGATGCATTGAAGGCGGAGTTTCCACCGTTCGATCTTGTTGTGGCTAACATTCCATACGGAATATCTTCGCCTCTGGTGGCTAAATTGGTGTACGGGGCAAGGCCGTTTCGGAGCGCCACACTGCTGCTGCAAAAGGAGTTTGCGAGGAGATTGTTGGCTAAGCCAGGTGACTCGGAGTTCAACCGCTTGGCTGTGAATGTGAACCTGGTGGCGGATGTGGAGTTTTTCATGGATGTGAGCAAGAGGGAGTTTGTTCCTTCCCCAAAAGTCGATTCATCCGTGGTTATAATTAGGCCGAAAGCTGAGATTCCGAATGTTGATCTAAACGAATGGTGGGCTTTCACAAAAGCTTGTTTCTGTAAGAAGAACAAGACGCTTGGAGCTACATTCAAGCAGAAGAAAAAGGTGATGGAGCTACTGGGGATGTCCAAACTGGCAGGCTCAAATGGTGACAGCAAAGATTATATTAGCAGCACTGACAATGACGACGATGAAGGAGAGAGTGATGAAGAGGAGTTTTCTCCGTCTCCTTGCTCGGAAATGGGGGCAAGTTCTTTCAAGGAGAAGTTAATGGGGGTTCTGAAATCATCTGATTTCGAAGACAAGAGGCCTTCGAAGCTGTCGAATGAGGAGTTACTTCATCTACTGGCATTGTTTAATCAAGCGGGAATATATTTTCATGATCAGTCCAAGAGTAGGAATGCAGAGAATGAATCACTTACTGTTGCTTACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000179 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009116 GO:0009119 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016433 GO:0016740 GO:0016741 GO:0017144 GO:0022613 GO:0031167 GO:0031974 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042278 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046085 GO:0046128 GO:0046483 GO:0055086 GO:0070013 GO:0071704 GO:0071840 GO:0072521 GO:0090304 GO:0140098 GO:0140102 GO:1901135 GO:1901360 GO:1901564 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RrnaAD

Protein Analysis

381

Amino Acids

42.4

Weight (kDa)

9.08

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RrnaAD	PF00398	52 - 277	4.2e-62	Ribosomal RNA adenine dimethylase
PrmA	PF06325	75 - 152	1.1e-06	Ribosomal protein L11 methyltransferase (PrmA)
MTS	PF05175	79 - 155	1e-05	Methyltransferase small domain
Methyltransf_25	PF13649	83 - 151	1.8e-11	Methyltransferase domain
Methyltransf_12	PF08242	84 - 151	5.1e-08	Methyltransferase domain
Methyltransf_11	PF08241	84 - 151	4.8e-08	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66360 AT5G66360
fragaria_vesca	FvH4_1g12340
malus_domestica	MD02G1137600.v1.1 MD15G1251400.v1.1
prunus_persica	Prupe.7G163000_v2.0.a1
pyrus_communis	pycom02g10890
rosa_chinensis	RchiOBHm_Chr2g0100161
rosa_laevigata	RLG00000016942
rosa_multiflora	Rmu_sc0018554.1_g000006
rosa_roxburghii	Rroxscaffold_2G00142510
rosa_rugosa	Rorug02G0086100
rosa_samantha	Rh2AG135200 Rh2BG138600 Rh2CG140400 Rh2DG140600
rosa_wichuraiana	Rw2G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	692
AccB1I	GGYRCC	1 cut(s)	266
AcsI	RAATTY	1 cut(s)	198
AfaI	GTAC	2 cut(s)	74, 497
AfiI	CCNNNNNNNGG	5 cut(s)	26, 269, 306, 616, 1101
AgsI	TTSAA	6 cut(s)	353, 380, 415, 586, 796, 964
AjnI	CCWGG	2 cut(s)	568, 609
AjuI	GAANNNNNNNTTGG	2 cut(s)	661, 693
AluBI	AGCT	7 cut(s)	61, 289, 707, 755, 788, 820, 1024
AluI	AGCT	7 cut(s)	61, 289, 707, 755, 788, 820, 1024
Alw26I	GTCTC	1 cut(s)	936
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	3 cut(s)	506, 698, 1013
ApeKI	GCWGC	6 cut(s)	58, 61, 175, 529, 532, 876
ApoI	RAATTY	1 cut(s)	198
Asp700I	GAANNNNTTC	1 cut(s)	469
AspLEI	GCGC	1 cut(s)	521
AspS9I	GGNCC	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	4 cut(s)	271, 584, 823, 866
AsuII	TTCGAA	3 cut(s)	217, 1002, 1019
AvaI	CYCGRG	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	1011
BbvI	GCAGC	6 cut(s)	48, 70, 187, 516, 519, 888
BccI	CCATC	4 cut(s)	95, 137, 331, 808
BceAI	ACGGC	2 cut(s)	302, 493
BciT130I	CCWGG	2 cut(s)	570, 611
BclI	TGATCA	1 cut(s)	1087
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	936
BfaI	CTAG	1 cut(s)	293
BfoI	RGCGCY	1 cut(s)	522
BlpI	GCTNAGC	1 cut(s)	564
Bme1390I	CCNGG	3 cut(s)	264, 570, 611
Bme18I	GGWCC	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	2 cut(s)	262, 268
BmrFI	CCNGG	3 cut(s)	264, 570, 611
BmrI	ACTGGG	1 cut(s)	833
BmsI	GCATC	1 cut(s)	397
BmuI	ACTGGG	1 cut(s)	833
BpiI	GAAGAC	1 cut(s)	1011
Bpu1102I	GCTNAGC	1 cut(s)	564
Bpu14I	TTCGAA	3 cut(s)	217, 1002, 1019
BpuEI	CTTGAG	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	684
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	5 cut(s)	26, 269, 306, 616, 1101
Bse1I	ACTGG	3 cut(s)	828, 843, 1056
BseBI	CCWGG	2 cut(s)	570, 611
BseDI	CCNNGG	1 cut(s)	684
BseGI	GGATG	6 cut(s)	148, 342, 625, 643, 680, 834
BseLI	CCNNNNNNNGG	5 cut(s)	26, 269, 306, 616, 1101
BseMII	CTCAG	1 cut(s)	699
BseNI	ACTGG	3 cut(s)	828, 843, 1056
BseRI	GAGGAG	4 cut(s)	146, 565, 932, 1049
BseXI	GCAGC	6 cut(s)	48, 70, 187, 516, 519, 888
BshFI	GGCC	3 cut(s)	508, 700, 1015
BshNI	GGYRCC	1 cut(s)	266
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	2 cut(s)	264, 270
BslI	CCNNNNNNNGG	5 cut(s)	26, 269, 306, 616, 1101
BsmAI	GTCTC	1 cut(s)	936
BsmBI	CGTCTC	1 cut(s)	936
BsmI	GAATGC	1 cut(s)	1111
BsnI	GGCC	3 cut(s)	508, 700, 1015
BsoBI	CYCGRG	1 cut(s)	251
Bsp119I	TTCGAA	3 cut(s)	217, 1002, 1019
Bsp143I	GATC	5 cut(s)	255, 382, 436, 724, 1087
Bsp1720I	GCTNAGC	1 cut(s)	564
BspANI	GGCC	3 cut(s)	508, 700, 1015
BspCNI	CTCAG	1 cut(s)	700
BspHI	TCATGA	1 cut(s)	1084
BspLI	GGNNCC	2 cut(s)	262, 268
BspT104I	TTCGAA	3 cut(s)	217, 1002, 1019
BspT107I	GGYRCC	1 cut(s)	266
BsrI	ACTGG	3 cut(s)	828, 843, 1056
BssECI	CCNNGG	1 cut(s)	684
BssMI	GATC	5 cut(s)	255, 382, 436, 724, 1087
Bst2UI	CCWGG	2 cut(s)	570, 611
Bst4CI	ACNGT	6 cut(s)	209, 247, 394, 432, 1129, 1139
Bst6I	CTCTTC	1 cut(s)	909
BstBI	TTCGAA	3 cut(s)	217, 1002, 1019
BstC8I	GCNNGC	1 cut(s)	844
BstDEI	CTNAG	2 cut(s)	564, 708
BstDSI	CCRYGG	1 cut(s)	684
BstF5I	GGATG	6 cut(s)	148, 342, 625, 643, 680, 834
BstH2I	RGCGCY	1 cut(s)	522
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	5 cut(s)	258, 385, 439, 727, 1090
BstMAI	GTCTC	1 cut(s)	936
BstMBI	GATC	5 cut(s)	255, 382, 436, 724, 1087
BstMWI	GCNNNNNNNGC	4 cut(s)	111, 114, 416, 1021
BstNI	CCWGG	2 cut(s)	570, 611
BstSCI	CCNGG	3 cut(s)	262, 568, 609
BstV1I	GCAGC	6 cut(s)	48, 70, 187, 516, 519, 888
BstV2I	GAAGAC	1 cut(s)	1011
BsuRI	GGCC	3 cut(s)	508, 700, 1015
BtgI	CCRYGG	1 cut(s)	684
BtsCI	GGATG	6 cut(s)	148, 342, 625, 643, 680, 834
BtsI	GCAGTG	1 cut(s)	524
BtsIMutI	CAGTG	2 cut(s)	524, 879
Cac8I	GCNNGC	1 cut(s)	844
CciI	TCATGA	1 cut(s)	1084
CfoI	GCGC	1 cut(s)	521
Cfr13I	GGNCC	1 cut(s)	260
CseI	GACGC	1 cut(s)	787
CsiI	ACCWGGT	1 cut(s)	609
Csp6I	GTAC	2 cut(s)	73, 496
CviAII	CATG	2 cut(s)	634, 1085
CviQI	GTAC	2 cut(s)	73, 496
DdeI	CTNAG	2 cut(s)	564, 708
DpnI	GATC	5 cut(s)	257, 384, 438, 726, 1089
DpnII	GATC	5 cut(s)	255, 382, 436, 724, 1087
Eam1104I	CTCTTC	1 cut(s)	909
EarI	CTCTTC	1 cut(s)	909
EciI	GGCGGA	2 cut(s)	434, 632
Eco147I	AGGCCT	1 cut(s)	1015
Eco32I	GATATC	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	251
EcoRI	GAATTC	1 cut(s)	198
EcoRII	CCWGG	2 cut(s)	568, 609
EcoRV	GATATC	1 cut(s)	80
EcoT22I	ATGCAT	1 cut(s)	412
Esp3I	CGTCTC	1 cut(s)	936
FaeI	CATG	2 cut(s)	637, 1088
FaiI	YATR	6 cut(s)	460, 635, 692, 870, 1078, 1086
FatI	CATG	2 cut(s)	633, 1084
FauI	CCCGC	1 cut(s)	1063
FbaI	TGATCA	1 cut(s)	1087
FokI	GGATG	6 cut(s)	155, 349, 632, 650, 667, 841
FspBI	CTAG	1 cut(s)	293
GlaI	GCGC	1 cut(s)	520
HaeII	RGCGCY	1 cut(s)	522
HaeIII	GGCC	3 cut(s)	508, 700, 1015
HapII	CCGG	2 cut(s)	264, 270
HgaI	GACGC	1 cut(s)	787
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	2 cut(s)	637, 1088
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HindIII	AAGCTT	2 cut(s)	287, 753
HinfI	GANTC	6 cut(s)	9, 30, 575, 677, 712, 1118
HpaII	CCGG	2 cut(s)	264, 270
HphI	GGTGA	4 cut(s)	271, 584, 823, 866
Hpy166II	GTNNAC	2 cut(s)	496, 607
Hpy188I	TCNGA	7 cut(s)	260, 516, 580, 717, 943, 987, 997
Hpy188III	TCNNGA	6 cut(s)	27, 203, 253, 293, 380, 1085
Hpy8I	GTNNAC	2 cut(s)	496, 607
Hpy99I	CGWCG	3 cut(s)	317, 323, 896
HpyAV	CCTTC	5 cut(s)	133, 409, 672, 893, 1026
HpyCH4III	ACNGT	6 cut(s)	209, 247, 394, 432, 1129, 1139
HpyCH4V	TGCA	5 cut(s)	64, 160, 410, 535, 1109
HpyF10VI	GCNNNNNNNGC	4 cut(s)	111, 114, 416, 1021
HpyF3I	CTNAG	2 cut(s)	564, 708
Hsp92II	CATG	2 cut(s)	637, 1088
HspAI	GCGC	1 cut(s)	519
Ksp22I	TGATCA	1 cut(s)	1087
Kzo9I	GATC	5 cut(s)	255, 382, 436, 724, 1087
LmnI	GCTCC	3 cut(s)	516, 785, 817
Lsp1109I	GCAGC	6 cut(s)	48, 70, 187, 516, 519, 888
LweI	GCATC	1 cut(s)	397
MabI	ACCWGGT	1 cut(s)	609
MaeI	CTAG	1 cut(s)	293
MaeIII	GTNAC	3 cut(s)	572, 854, 1038
MalI	GATC	5 cut(s)	257, 384, 438, 726, 1089
MboI	GATC	5 cut(s)	255, 382, 436, 724, 1087
MboII	GAAGA	7 cut(s)	148, 341, 462, 781, 814, 926, 1016
MfeI	CAATTG	1 cut(s)	51
MluCI	AATT	4 cut(s)	51, 198, 488, 693
MlyI	GAGTC	2 cut(s)	18, 569
Mph1103I	ATGCAT	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	469
MseI	TTAA	3 cut(s)	185, 974, 1062
MslI	CAYNNNNRTG	1 cut(s)	638
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	2 cut(s)	264, 270
MspR9I	CCNGG	3 cut(s)	264, 570, 611
MunI	CAATTG	1 cut(s)	51
Mva1269I	GAATGC	1 cut(s)	1111
MvaI	CCWGG	2 cut(s)	570, 611
MwoI	GCNNNNNNNGC	4 cut(s)	111, 114, 416, 1021
NciI	CCSGG	1 cut(s)	264
NdeII	GATC	5 cut(s)	255, 382, 436, 724, 1087
NlaIII	CATG	2 cut(s)	637, 1088
NlaIV	GGNNCC	2 cut(s)	262, 268
NmuCI	GTSAC	2 cut(s)	572, 854
NsiI	ATGCAT	1 cut(s)	412
NspV	TTCGAA	3 cut(s)	217, 1002, 1019
PaeR7I	CTCGAG	1 cut(s)	251
PagI	TCATGA	1 cut(s)	1084
PceI	AGGCCT	1 cut(s)	1015
PcsI	WCGNNNNNNNCGW	3 cut(s)	318, 681, 1025
PctI	GAATGC	1 cut(s)	1111
PdmI	GAANNNNTTC	1 cut(s)	469
PfeI	GAWTC	4 cut(s)	30, 677, 712, 1118
PflFI	GACNNNGTC	1 cut(s)	245
PleI	GAGTC	2 cut(s)	17, 569
PpsI	GAGTC	2 cut(s)	17, 569
PsiI	TTATAA	1 cut(s)	692
Psp6I	CCWGG	2 cut(s)	568, 609
PspGI	CCWGG	2 cut(s)	568, 609
PspN4I	GGNNCC	2 cut(s)	262, 268
PspPI	GGNCC	1 cut(s)	260
PsyI	GACNNNGTC	1 cut(s)	245
PvuII	CAGCTG	1 cut(s)	61
RsaI	GTAC	2 cut(s)	74, 497
RsaNI	GTAC	2 cut(s)	73, 496
RseI	CAYNNNNRTG	1 cut(s)	638
SaqAI	TTAA	3 cut(s)	185, 974, 1062
Sau3AI	GATC	5 cut(s)	255, 382, 436, 724, 1087
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	2 cut(s)	18, 569
ScrFI	CCNGG	3 cut(s)	264, 570, 611
SexAI	ACCWGGT	1 cut(s)	609
SfaNI	GCATC	1 cut(s)	397
Sfr274I	CTCGAG	1 cut(s)	251
SfuI	TTCGAA	3 cut(s)	217, 1002, 1019
SinI	GGWCC	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	638
SmlI	CTYRAG	2 cut(s)	251, 284
SmoI	CTYRAG	2 cut(s)	251, 284
Sse9I	AATT	4 cut(s)	51, 198, 488, 693
SseBI	AGGCCT	1 cut(s)	1015
SspMI	CTAG	1 cut(s)	293
StuI	AGGCCT	1 cut(s)	1015
StyD4I	CCNGG	3 cut(s)	262, 568, 609
TaaI	ACNGT	6 cut(s)	209, 247, 394, 432, 1129, 1139
TasI	AATT	4 cut(s)	51, 198, 488, 693
TauI	GCSGC	6 cut(s)	87, 108, 111, 114, 117, 302
TfiI	GAWTC	4 cut(s)	30, 677, 712, 1118
Tru1I	TTAA	3 cut(s)	185, 974, 1062
Tru9I	TTAA	3 cut(s)	185, 974, 1062
TscAI	CASTG	2 cut(s)	531, 886
TseFI	GTSAC	2 cut(s)	572, 854
TseI	GCWGC	6 cut(s)	58, 61, 175, 529, 532, 876
Tsp45I	GTSAC	2 cut(s)	572, 854
TspDTI	ATGAA	7 cut(s)	622, 669, 912, 927, 1034, 1073, 1131
TspGWI	ACGGA	3 cut(s)	477, 673, 918
TspRI	CASTG	2 cut(s)	531, 886
Tth111I	GACNNNGTC	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	1 cut(s)	198
XbaI	TCTAGA	1 cut(s)	292
XhoI	CTCGAG	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	469
XspI	CTAG	1 cut(s)	293
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.