FvH4_1g12600

Periodic tryptophan protein 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0007129
Physical Location & Seq
Forward (+)
6922988 .. 6926108
3121 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12600.t1

Sequence Viewer

Length: 1155 bp
ATGGAGGTTGAAGAGACCACCGGTGAGGGTGGCGAAGTCTCGCAAGCATTAGAGGTGGCGAAAGCGCTTGGCAGAGCTGAAAAGGTGACCAAGTCAGGGAGCAAGTATGATGACATTACGGAAGGGTTGAAGGAACTTGACATGGATCATTATGACGACGAGGATGATGATGGCATTGATTTGTTCAGCGGTGGGTTTGGGGACCTTTACTACCCAAGTAACGATATGGATCCATATCTCAAGAAGGAAAAGGATGATGATGAGGATTCTGAAGATAGTGAGGACATGATCATCAACCCAAATGATTCAGTCATAGTTTGTGCTCGCAATGAGGATGATATCAGTCAGCTTGAGATTTGGCTATATACTGAAACAGAGGATGGTGAACCAGATGTTTATGTTCACCATGACATAATCATTTCAGCATTTCCCCTTTGCACAGCATGGCTTGACTGTCCTCTCAAAGGTGGAGACAAAGGAAATTTTATAGCCGTTGGTTTGATGGGTGAACCTACCATTGAGATATGGGATCTTGACATTATTGATGAAGTACAACCATGTGTCGTATTGGGTGGTATTGCTGAGAAGAAGAAACAGAAAGGAAAAAAGACCTCAATTAAATACAAAGAAGACAGTCACACAGATTCAGTTTTGGGGCTTGCTTGGAATAAGGAGTACAGAAATATACTGGCCAGTGCAAGTGCTGACAAAAAAGTTAAAATTTGGGATGTGGCTACCGGAAAATGTAACATTACTATGGAGCATCATACAGACAAGGTTCAGGCAGTTGCGTGGAATCATTTTGCCCCCCAAGTTCTTCTCAGTGGATCTTTTGATCATTCAATTGTCTTGAAAGATGGAAGGGTGCCAACACATTCCGGTTATAAGTGGACAGTGACAGCTGATGTAGAAAGCTTAGCATGGGATCCACATTCTGAGAATTCATTTGTGGTGAGTCTTGAAGATGGTACAGTACAAGGTTTTGATATTCGGGCTGCCACTTCTGCTCCTACTTCTGAATCTAAACCCAGTTTTACTCTTCATGCACACGACAAAGCTGTTTGTGGAATATCCTATAATCCTTTGGCACCTAATCTTCTTGCAACTGGATCCACAGATAAAATGGTGAAGCTTTGGGATTTGTCTAATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001933 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005794 GO:0006325 GO:0006355 GO:0006356 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0012505 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032269 GO:0033135 GO:0033137 GO:0033139 GO:0033140 GO:0034770 GO:0034773 GO:0034968 GO:0035064 GO:0036211 GO:0042325 GO:0042326 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045597 GO:0045893 GO:0045935 GO:0045936 GO:0045943 GO:0046425 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0140030 GO:0140034 GO:1901564 GO:1901836 GO:1901838 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1904892 GO:1990889 GO:2000112 GO:2000736 GO:2000738 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

385

Amino Acids

42.35

Weight (kDa)

4.46

Isoelectric Point (pI)

31.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_CAF1B_HIR1 PF24105 170 - 269 8e-07 CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3 PF25174 202 - 382 7.1e-27 THOC3 beta-propeller domain
WD40_Prp19 PF24814 203 - 381 5.1e-14 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 205 - 313 6.5e-15 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 211 - 286 1.6e-14 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 211 - 286 7e-11 WDR3 first beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 211 - 302 5.1e-06 MABP1/WDR62 second WD40 domain
EIF3I PF24805 213 - 382 8e-06 EIF3I
WD40_Gbeta PF25391 226 - 380 3.7e-08 G protein beta WD-40 repeat protein
WD40_CDC20-Fz PF24807 300 - 383 4.4e-10 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 300 - 383 4.7e-07 WDR3 first beta-propeller domain
Beta-prop_RIG_2nd PF23775 300 - 383 5.1e-06 RIG second beta-propeller
Beta-prop_WDR5 PF25175 301 - 383 4.8e-07 WDR5 beta-propeller domain
Beta-prop_EIPR1 PF23609 302 - 379 4.1e-09 EIPR1 beta-propeller
WD40 PF00400 342 - 380 3.9e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 885
AccB1I GGYRCC 2 cut(s) 865, 1087
AciI CCGC 1 cut(s) 189
AclWI GGATC 9 cut(s) 153, 224, 237, 537, 835, 920, 933, 1104, 1117
AcoI YGGCCR 1 cut(s) 690
AcsI RAATTY 3 cut(s) 481, 720, 940
AcuI CTGAAG 1 cut(s) 291
AfaI GTAC 4 cut(s) 552, 677, 970, 975
AfeI AGCGCT 1 cut(s) 66
AfiI CCNNNNNNNGG 2 cut(s) 96, 464
AgeI ACCGGT 1 cut(s) 20
AgsI TTSAA 5 cut(s) 11, 130, 843, 853, 962
AluBI AGCT 6 cut(s) 77, 349, 902, 915, 1058, 1132
AluI AGCT 6 cut(s) 77, 349, 902, 915, 1058, 1132
Alw21I GWGCWC 1 cut(s) 325
Alw26I GTCTC 3 cut(s) 8, 43, 465
AlwI GGATC 9 cut(s) 153, 224, 237, 537, 835, 920, 933, 1104, 1117
Aor51HI AGCGCT 1 cut(s) 66
AoxI GGCC 1 cut(s) 690
ApeKI GCWGC 1 cut(s) 995
ApoI RAATTY 3 cut(s) 481, 720, 940
AsiGI ACCGGT 1 cut(s) 20
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 202
AsuHPI GGTGA 7 cut(s) 35, 97, 395, 395, 518, 964, 1138
AvaII GGWCC 1 cut(s) 202
BalI TGGCCA 1 cut(s) 692
BamHI GGATCC 3 cut(s) 229, 925, 1109
BanI GGYRCC 2 cut(s) 865, 1087
BbsI GAAGAC 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 1 cut(s) 982
BccI CCATC 5 cut(s) 164, 374, 496, 851, 959
BceAI ACGGC 1 cut(s) 476
BclI TGATCA 2 cut(s) 288, 835
BcoDI GTCTC 3 cut(s) 8, 43, 465
BfoI RGCGCY 1 cut(s) 68
BisI GCNGC 1 cut(s) 996
BlpI GCTNAGC 1 cut(s) 916
BlsI GCNGC 1 cut(s) 997
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 6 cut(s) 203, 231, 867, 927, 1089, 1111
BmrI ACTGGG 1 cut(s) 1023
BmsI GCATC 1 cut(s) 772
BmuI ACTGGG 1 cut(s) 1023
BpiI GAAGAC 1 cut(s) 636
Bpu1102I GCTNAGC 1 cut(s) 916
BpuEI CTTGAG 2 cut(s) 224, 371
BsaBI GATNNNNATC 2 cut(s) 228, 234
BsaI GGTCTC 1 cut(s) 8
BsaWI WCCGGW 3 cut(s) 20, 737, 878
BsaXI ACNNNNNCTCC 2 cut(s) 991, 1021
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 464
Bse118I RCCGGY 1 cut(s) 20
Bse1I ACTGG 4 cut(s) 693, 693, 1029, 1111
Bse3DI GCAATG 1 cut(s) 334
Bse8I GATNNNNATC 2 cut(s) 228, 234
BseGI GGATG 5 cut(s) 169, 259, 340, 385, 733
BseJI GATNNNNATC 2 cut(s) 228, 234
BseLI CCNNNNNNNGG 2 cut(s) 96, 464
BseMI GCAATG 1 cut(s) 334
BseMII CTCAG 3 cut(s) 573, 835, 927
BseNI ACTGG 4 cut(s) 693, 693, 1029, 1111
BseXI GCAGC 1 cut(s) 982
BshFI GGCC 1 cut(s) 692
BshNI GGYRCC 2 cut(s) 865, 1087
BshTI ACCGGT 1 cut(s) 20
BsiHKAI GWGCWC 1 cut(s) 325
BsiSI CCGG 3 cut(s) 21, 738, 879
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 2 cut(s) 96, 464
BsmAI GTCTC 3 cut(s) 8, 43, 465
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 1 cut(s) 692
Bso31I GGTCTC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 8 cut(s) 145, 229, 288, 529, 827, 835, 925, 1109
Bsp1720I GCTNAGC 1 cut(s) 916
BspACI CCGC 1 cut(s) 189
BspANI GGCC 1 cut(s) 692
BspCNI CTCAG 3 cut(s) 574, 834, 928
BspLI GGNNCC 6 cut(s) 203, 231, 867, 927, 1089, 1111
BspPI GGATC 9 cut(s) 153, 224, 237, 537, 835, 920, 933, 1104, 1117
BspT107I GGYRCC 2 cut(s) 865, 1087
BspTNI GGTCTC 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 334
BsrFI RCCGGY 1 cut(s) 20
BsrI ACTGG 4 cut(s) 693, 693, 1029, 1111
BssAI RCCGGY 1 cut(s) 20
BssMI GATC 8 cut(s) 145, 229, 288, 529, 827, 835, 925, 1109
Bst4CI ACNGT 4 cut(s) 455, 635, 895, 973
Bst6I CTCTTC 2 cut(s) 6, 1044
BstC8I GCNNGC 3 cut(s) 45, 325, 660
BstDEI CTNAG 4 cut(s) 582, 821, 916, 936
BstEII GGTNACC 1 cut(s) 85
BstENI CCTNNNNNAGG 1 cut(s) 462
BstF5I GGATG 5 cut(s) 169, 259, 340, 385, 733
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 8 cut(s) 148, 232, 291, 532, 830, 838, 928, 1112
BstMAI GTCTC 3 cut(s) 8, 43, 465
BstMBI GATC 8 cut(s) 145, 229, 288, 529, 827, 835, 925, 1109
BstMWI GCNNNNNNNGC 1 cut(s) 1004
BstPI GGTNACC 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 982
BstV2I GAAGAC 1 cut(s) 636
BstX2I RGATCY 5 cut(s) 229, 529, 827, 925, 1109
BstYI RGATCY 5 cut(s) 229, 529, 827, 925, 1109
BsuRI GGCC 1 cut(s) 692
BtsCI GGATG 5 cut(s) 169, 259, 340, 385, 733
BtsIMutI CAGTG 3 cut(s) 700, 829, 900
Cac8I GCNNGC 3 cut(s) 45, 325, 660
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 202
Csp6I GTAC 4 cut(s) 551, 676, 969, 974
CspAI ACCGGT 1 cut(s) 20
CviAII CATG 7 cut(s) 142, 286, 407, 444, 558, 921, 1043
CviQI GTAC 4 cut(s) 551, 676, 969, 974
DdeI CTNAG 4 cut(s) 582, 821, 916, 936
DpnI GATC 8 cut(s) 147, 231, 290, 531, 829, 837, 927, 1111
DpnII GATC 8 cut(s) 145, 229, 288, 529, 827, 835, 925, 1109
EaeI YGGCCR 1 cut(s) 690
Eam1104I CTCTTC 2 cut(s) 6, 1044
EarI CTCTTC 2 cut(s) 6, 1044
Eco31I GGTCTC 1 cut(s) 8
Eco32I GATATC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 202
Eco47III AGCGCT 1 cut(s) 66
Eco57I CTGAAG 1 cut(s) 291
Eco91I GGTNACC 1 cut(s) 85
EcoNI CCTNNNNNAGG 1 cut(s) 462
EcoO109I RGGNCCY 1 cut(s) 202
EcoO65I GGTNACC 1 cut(s) 85
EcoRI GAATTC 1 cut(s) 940
EcoRV GATATC 1 cut(s) 340
FaeI CATG 7 cut(s) 145, 289, 410, 447, 561, 924, 1046
FaqI GGGAC 1 cut(s) 215
FatI CATG 7 cut(s) 141, 285, 406, 443, 557, 920, 1042
FbaI TGATCA 2 cut(s) 288, 835
Fnu4HI GCNGC 1 cut(s) 996
FokI GGATG 5 cut(s) 176, 266, 347, 392, 740
Fsp4HI GCNGC 1 cut(s) 996
GlaI GCGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 996
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 1 cut(s) 692
HapII CCGG 3 cut(s) 21, 738, 879
HhaI GCGC 1 cut(s) 67
Hin1II CATG 7 cut(s) 145, 289, 410, 447, 561, 924, 1046
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HindIII AAGCTT 2 cut(s) 913, 1130
HinfI GANTC 6 cut(s) 266, 305, 644, 796, 955, 1019
HpaII CCGG 3 cut(s) 21, 738, 879
HphI GGTGA 7 cut(s) 35, 97, 395, 395, 518, 964, 1138
Hpy166II GTNNAC 4 cut(s) 386, 403, 509, 891
Hpy188I TCNGA 3 cut(s) 271, 937, 1018
Hpy188III TCNNGA 4 cut(s) 241, 533, 850, 959
Hpy8I GTNNAC 4 cut(s) 386, 403, 509, 891
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 4 cut(s) 116, 124, 238, 855
HpyCH4III ACNGT 4 cut(s) 455, 635, 895, 973
HpyCH4V TGCA 4 cut(s) 438, 698, 1046, 1103
HpyF10VI GCNNNNNNNGC 1 cut(s) 1004
HpyF3I CTNAG 4 cut(s) 582, 821, 916, 936
Hsp92II CATG 7 cut(s) 145, 289, 410, 447, 561, 924, 1046
HspAI GCGC 1 cut(s) 65
Ksp22I TGATCA 2 cut(s) 288, 835
Kzo9I GATC 8 cut(s) 145, 229, 288, 529, 827, 835, 925, 1109
LmnI GCTCC 3 cut(s) 99, 760, 1012
Lsp1109I GCAGC 1 cut(s) 982
LweI GCATC 1 cut(s) 772
MaeIII GTNAC 5 cut(s) 85, 218, 635, 746, 895
MalI GATC 8 cut(s) 147, 231, 290, 531, 829, 837, 927, 1111
MboI GATC 8 cut(s) 145, 229, 288, 529, 827, 835, 925, 1109
MboII GAAGA 9 cut(s) 23, 284, 598, 601, 641, 809, 974, 1031, 1088
MfeI CAATTG 1 cut(s) 843
MflI RGATCY 5 cut(s) 229, 529, 827, 925, 1109
MhlI GDGCHC 1 cut(s) 325
MlsI TGGCCA 1 cut(s) 692
MluCI AATT 6 cut(s) 481, 615, 720, 843, 940, 1150
MluNI TGGCCA 1 cut(s) 692
MlyI GAGTC 1 cut(s) 964
MnlI CCTC 9 cut(s) 19, 46, 154, 256, 274, 325, 370, 468, 622
Mox20I TGGCCA 1 cut(s) 692
MscI TGGCCA 1 cut(s) 692
MseI TTAA 3 cut(s) 618, 717, 1153
MslI CAYNNNNRTG 1 cut(s) 755
Msp20I TGGCCA 1 cut(s) 692
MspA1I CMGCKG 2 cut(s) 189, 902
MspI CCGG 3 cut(s) 21, 738, 879
MunI CAATTG 1 cut(s) 843
MwoI GCNNNNNNNGC 1 cut(s) 1004
NdeII GATC 8 cut(s) 145, 229, 288, 529, 827, 835, 925, 1109
NlaIII CATG 7 cut(s) 145, 289, 410, 447, 561, 924, 1046
NlaIV GGNNCC 6 cut(s) 203, 231, 867, 927, 1089, 1111
NmuCI GTSAC 3 cut(s) 85, 635, 895
PfeI GAWTC 5 cut(s) 266, 305, 644, 796, 1019
PflFI GACNNNGTC 1 cut(s) 91
PinAI ACCGGT 1 cut(s) 20
PkrI GCNGC 1 cut(s) 997
PleI GAGTC 1 cut(s) 963
PpsI GAGTC 1 cut(s) 963
PpuMI RGGWCCY 1 cut(s) 202
PsiI TTATAA 1 cut(s) 885
Psp5II RGGWCCY 1 cut(s) 202
PspEI GGTNACC 1 cut(s) 85
PspN4I GGNNCC 6 cut(s) 203, 231, 867, 927, 1089, 1111
PspPI GGNCC 1 cut(s) 202
PspPPI RGGWCCY 1 cut(s) 202
PsuI RGATCY 5 cut(s) 229, 529, 827, 925, 1109
PsyI GACNNNGTC 1 cut(s) 91
PvuII CAGCTG 1 cut(s) 902
RsaI GTAC 4 cut(s) 552, 677, 970, 975
RsaNI GTAC 4 cut(s) 551, 676, 969, 974
RseI CAYNNNNRTG 1 cut(s) 755
SaqAI TTAA 3 cut(s) 618, 717, 1153
SatI GCNGC 1 cut(s) 996
Sau3AI GATC 8 cut(s) 145, 229, 288, 529, 827, 835, 925, 1109
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 1 cut(s) 964
SduI GDGCHC 1 cut(s) 325
SfaNI GCATC 1 cut(s) 772
SgrAI CRCCGGYG 1 cut(s) 20
SinI GGWCC 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 755
SmlI CTYRAG 2 cut(s) 239, 350
SmoI CTYRAG 2 cut(s) 239, 350
Sse9I AATT 6 cut(s) 481, 615, 720, 843, 940, 1150
SsiI CCGC 1 cut(s) 189
TaaI ACNGT 4 cut(s) 455, 635, 895, 973
TasI AATT 6 cut(s) 481, 615, 720, 843, 940, 1150
TatI WGTACW 3 cut(s) 550, 675, 973
TfiI GAWTC 5 cut(s) 266, 305, 644, 796, 1019
Tru1I TTAA 3 cut(s) 618, 717, 1153
Tru9I TTAA 3 cut(s) 618, 717, 1153
TscAI CASTG 3 cut(s) 700, 829, 900
TseFI GTSAC 3 cut(s) 85, 635, 895
TseI GCWGC 1 cut(s) 995
Tsp45I GTSAC 3 cut(s) 85, 635, 895
TspDTI ATGAA 3 cut(s) 561, 933, 1031
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 3 cut(s) 700, 829, 900
Tth111I GACNNNGTC 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 202
XagI CCTNNNNNAGG 1 cut(s) 462
XapI RAATTY 3 cut(s) 481, 720, 940
XcmI CCANNNNNNNNNTGG 1 cut(s) 1120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.