Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000528.1

Orthogroup ID

OG0007129

Physical Location & Seq

Genomic Coordinates Reverse (-)

40294 .. 42677

Gene Structure 2384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000528.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgatatcggcagtttcctgggtgcccaaaggagtttcaaagccagtccccgcagtcgctgagccgcccacccaagaagaaatcgatgagttaataaaatctggtatcttagataaaagtggagatggtggtggaagcgatgaggatgatgagggagaaatggaggttgaaaccaccagtgagggtggtgaagtctcgcaggcattagaggtagcaaaagcactcggcagagcttccaaagtgactaaatcagggagcaattatgatgacattaccgaaggattgaaggaacttgacatggataattatgacgacgaggataatgatggtatatcaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001933 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005794 GO:0006325 GO:0006355 GO:0006356 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0012505 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032269 GO:0033135 GO:0033137 GO:0033139 GO:0033140 GO:0034770 GO:0034773 GO:0034968 GO:0035064 GO:0036211 GO:0042325 GO:0042326 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045597 GO:0045893 GO:0045935 GO:0045936 GO:0045943 GO:0046425 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0140030 GO:0140034 GO:1901564 GO:1901836 GO:1901838 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1904892 GO:1990889 GO:2000112 GO:2000736 GO:2000738 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

113

Amino Acids

11.89

Weight (kDa)

4.05

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18900 AT4G18905 AT4G18905 AT4G35370
fragaria_vesca	FvH4_1g12600 FvH4_5g33300 FvH4_5g33300 FvH4_5g33300 FvH4_5g33300
malus_domestica	MD12G1093200.v1.1 MD14G1085200.v1.1
prunus_persica	Prupe.7G160700_v2.0.a1 Prupe.7G160700_v2.0.a1
pyrus_communis	pycom12g07850 pycom14g07480
rosa_chinensis	RchiOBHm_Chr2g0100561
rosa_laevigata	RLG00000016985
rosa_multiflora	Rmu_sc0000528.1_g000008
rosa_roxburghii	Rroxscaffold_2G00142130
rosa_rugosa	Rorug02G0089500
rosa_samantha	Rh2AG138600 Rh2BG142000 Rh2CG144300 Rh2DG143700
rosa_wichuraiana	Rw2G010860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AciI	CCGC	2 cut(s)	51, 65
AgsI	TTSAA	3 cut(s)	39, 170, 286
AjnI	CCWGG	1 cut(s)	17
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
Alw26I	GTCTC	1 cut(s)	199
AlwNI	CAGNNNCTG	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	27
BanI	GGYRCC	1 cut(s)	22
BccI	CCATC	2 cut(s)	119, 320
BciT130I	CCWGG	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	199
BisI	GCNGC	1 cut(s)	65
BlpI	GCTNAGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	19
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	19
Bpu1102I	GCTNAGC	1 cut(s)	60
Bsa29I	ATCGAT	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	18
Bse1I	ACTGG	2 cut(s)	44, 177
BseBI	CCWGG	1 cut(s)	19
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	2 cut(s)	44, 177
BseSI	GKGCMC	1 cut(s)	27
BshNI	GGYRCC	1 cut(s)	22
BshVI	ATCGAT	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp1720I	GCTNAGC	1 cut(s)	60
BspACI	CCGC	2 cut(s)	51, 65
BspCNI	CTCAG	1 cut(s)	52
BspDI	ATCGAT	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	22
BsrI	ACTGG	2 cut(s)	44, 177
BssECI	CCNNGG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	2 cut(s)	60, 109
BstF5I	GGATG	1 cut(s)	151
BstMAI	GTCTC	1 cut(s)	199
BstNI	CCWGG	1 cut(s)	19
BstSCI	CCNGG	1 cut(s)	17
BstSLI	GKGCMC	1 cut(s)	27
Bsu15I	ATCGAT	1 cut(s)	84
BsuTUI	ATCGAT	1 cut(s)	84
BtgZI	GCGATG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	201
CaiI	CAGNNNCTG	1 cut(s)	59
ClaI	ATCGAT	1 cut(s)	84
CviAII	CATG	1 cut(s)	298
CviJI	RGCY	3 cut(s)	43, 64, 233
CviKI_1	RGCY	3 cut(s)	43, 64, 233
DdeI	CTNAG	2 cut(s)	60, 109
Eco32I	GATATC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	17
EcoRV	GATATC	1 cut(s)	6
FaeI	CATG	1 cut(s)	301
FaiI	YATR	4 cut(s)	264, 299, 309, 332
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	1 cut(s)	297
FauI	CCCGC	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	65
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	65
GluI	GCNGC	1 cut(s)	65
Hin1II	CATG	1 cut(s)	301
HphI	GGTGA	1 cut(s)	200
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	2 cut(s)	272, 280
HpyF3I	CTNAG	2 cut(s)	60, 109
Hsp92II	CATG	1 cut(s)	301
LmnI	GCTCC	1 cut(s)	255
LpnPI	CCDG	7 cut(s)	4, 31, 57, 87, 185, 190, 237
MaeIII	GTNAC	1 cut(s)	241
MboII	GAAGA	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	3 cut(s)	259, 304, 336
MnlI	CCTC	6 cut(s)	136, 145, 157, 175, 202, 310
MseI	TTAA	1 cut(s)	92
MspR9I	CCNGG	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	19
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	1 cut(s)	24
NmeAIII	GCCGAG	1 cut(s)	204
NmuCI	GTSAC	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	24
PstNI	CAGNNNCTG	1 cut(s)	59
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	3 cut(s)	168, 213, 235
Sse9I	AATT	3 cut(s)	259, 304, 336
SsiI	CCGC	2 cut(s)	51, 65
StyD4I	CCNGG	1 cut(s)	17
TaqI	TCGA	1 cut(s)	84
TasI	AATT	3 cut(s)	259, 304, 336
TauI	GCSGC	1 cut(s)	67
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	241
TspRI	CASTG	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.