Rh2AG138600

Periodic tryptophan protein 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0007129
Physical Location & Seq
Forward (+)
12582824 .. 12587894
5071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG138600.1

Sequence Viewer

Length: 1176 bp
ATGATATCGGCAGTTTCCTGGGTGCCCAAAGGAGTTTCAAAGCCAGTCCCCGCAGTCGCTGAGCCGCCCACCCAAGAAGAAATCGATGAGTTAATAAAATCTGGTATCTTAGACAAAAGTGGAGATGGTGGTGGAAACGATGAGGATGATGAGGGAGAAATGGAGGTTGAAACCACCAGTGAGGGTGGTGAAGTCTCGCAGGCATTAGAGGTAGCAAAAGCACTCGGCAGAGCTTCCAAAGTGACTAAATCAGGGAGCAATTATGATGACATTACCGAAGGATTGAAGGAACTTGACATGGATAATTATGACGACGAGGATAATGATGGCATTGATCTGTTTAGTGGTGGGTATGGGGACCTTTACTACCCAAGTAATGATATGGATCCATATCTCAAGAAGGACAAGGATGATGACGAGGATTCTGAAGATAGTGAGGACATGACCATCAACCCAAATGATGCAGTCATAGTTTGTGCTCGCAATGAGGATGATATCAGTCAGCTTGAGATTTGGCTGTATACTGAAACAGAAGATGGCGAACCAGATGTTTATGTTCACCATGACATCATCATTTCAGCATTTCCCCTTTGCACAGCATGGCTTGATTGCCCTCTCAAAGGTGGAGACAAAGGGAATTTTATAGCTGTTGGTTTGATGGGTGAACCTACCATTGAGATATGGGATCTTGACATTATTGATGAAGTACAACCATGTGTGGTCCTGGGTGGTATTGCTGAGAAGAAGAAAAAGAAAGGAAAAAAGACCTCAATCAAATACAAAGAAGACAGTCACACAGATTCTGTTCTGGGGCTTGCTTGGAATAAGGAGTACAGAAATATACTGGCCAGTGCAAGTGCTGACAAACAAGTTAAAATTTGGGATGTGGCTACTGGAAAATGTAACATTACTATGGAGCATCATACAGACAAGGTTCAGGCGGTTGCATGGAATCATTTTGCCCCTCAAGTTCTTCTTAGTGGATCTTTTGATCATTCAATTGTCTTGAAAGATGGAAGGGTGCCAACACATTCTGGTTATAAGTGGACAGTGACAGCTGATGTAGAAAGCTTAGCATGGGATCCACACACTGAGCATTCATTTGTGGTGTGTGCTTTGGCCTCTAAAGACGGTCATTTTCAATTACAACTTTTTTCCAGTTTTTGTGATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001933 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005794 GO:0006325 GO:0006355 GO:0006356 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0012505 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032269 GO:0033135 GO:0033137 GO:0033139 GO:0033140 GO:0034770 GO:0034773 GO:0034968 GO:0035064 GO:0036211 GO:0042325 GO:0042326 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045597 GO:0045893 GO:0045935 GO:0045936 GO:0045943 GO:0046425 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0140030 GO:0140034 GO:1901564 GO:1901836 GO:1901838 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1904892 GO:1990889 GO:2000112 GO:2000736 GO:2000738 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

391

Amino Acids

43.05

Weight (kDa)

4.34

Isoelectric Point (pI)

31.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_CAF1B_HIR1 PF24105 224 - 331 1.2e-06 CAF1B/HIR1 beta-propeller domain
WD40_Prp19 PF24814 255 - 338 7.2e-09 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 256 - 370 1.1e-15 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 257 - 371 3.2e-15 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 263 - 338 1.3e-14 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 263 - 338 5.3e-11 WDR3 first beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 263 - 354 5.1e-06 MABP1/WDR62 second WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1041
AccB1I GGYRCC 2 cut(s) 22, 1021
AccI GTMKAC 1 cut(s) 521
AciI CCGC 3 cut(s) 51, 65, 941
AclWI GGATC 6 cut(s) 380, 393, 693, 991, 1076, 1089
AcoI YGGCCR 1 cut(s) 846
AcsI RAATTY 2 cut(s) 637, 876
AcuI CTGAAG 1 cut(s) 447
AfaI GTAC 2 cut(s) 708, 833
AfiI CCNNNNNNNGG 1 cut(s) 620
AgsI TTSAA 6 cut(s) 39, 170, 286, 999, 1009, 1142
AjnI CCWGG 2 cut(s) 17, 723
AluBI AGCT 5 cut(s) 233, 505, 647, 1058, 1071
AluI AGCT 5 cut(s) 233, 505, 647, 1058, 1071
Alw21I GWGCWC 1 cut(s) 481
Alw26I GTCTC 2 cut(s) 199, 621
AlwI GGATC 6 cut(s) 380, 393, 693, 991, 1076, 1089
AlwNI CAGNNNCTG 2 cut(s) 59, 803
AoxI GGCC 2 cut(s) 846, 1119
ApoI RAATTY 2 cut(s) 637, 876
AspS9I GGNCC 2 cut(s) 358, 721
AsuHPI GGTGA 3 cut(s) 200, 551, 674
AvaII GGWCC 2 cut(s) 358, 721
BaeGI GKGCMC 1 cut(s) 27
BalI TGGCCA 1 cut(s) 848
BamHI GGATCC 2 cut(s) 385, 1081
BanI GGYRCC 2 cut(s) 22, 1021
BbsI GAAGAC 1 cut(s) 792
Bbv12I GWGCWC 1 cut(s) 481
BccI CCATC 6 cut(s) 119, 320, 455, 530, 652, 1007
BciT130I CCWGG 2 cut(s) 19, 725
BclI TGATCA 1 cut(s) 991
BcoDI GTCTC 2 cut(s) 199, 621
BisI GCNGC 1 cut(s) 65
BlpI GCTNAGC 2 cut(s) 60, 1072
BlsI GCNGC 1 cut(s) 66
Bme1390I CCNGG 2 cut(s) 19, 725
Bme18I GGWCC 2 cut(s) 358, 721
BmgT120I GGNCC 2 cut(s) 358, 721
BmiI GGNNCC 5 cut(s) 24, 359, 387, 1023, 1083
BmrFI CCNGG 2 cut(s) 19, 725
BmsI GCATC 2 cut(s) 451, 928
BpiI GAAGAC 1 cut(s) 792
Bpu1102I GCTNAGC 2 cut(s) 60, 1072
BpuEI CTTGAG 3 cut(s) 380, 527, 951
Bsa29I ATCGAT 1 cut(s) 84
BsaBI GATNNNNATC 2 cut(s) 384, 390
BsaJI CCNNGG 2 cut(s) 18, 724
Bsc4I CCNNNNNNNGG 1 cut(s) 620
Bse1I ACTGG 6 cut(s) 44, 177, 849, 849, 898, 1158
Bse3DI GCAATG 1 cut(s) 490
Bse8I GATNNNNATC 2 cut(s) 384, 390
BseBI CCWGG 2 cut(s) 19, 725
BseCI ATCGAT 1 cut(s) 84
BseDI CCNNGG 2 cut(s) 18, 724
BseGI GGATG 4 cut(s) 151, 415, 496, 889
BseJI GATNNNNATC 2 cut(s) 384, 390
BseLI CCNNNNNNNGG 1 cut(s) 620
BseMI GCAATG 1 cut(s) 490
BseMII CTCAG 3 cut(s) 51, 729, 1083
BseNI ACTGG 6 cut(s) 44, 177, 849, 849, 898, 1158
BseSI GKGCMC 1 cut(s) 27
BshFI GGCC 2 cut(s) 848, 1121
BshNI GGYRCC 2 cut(s) 22, 1021
BshVI ATCGAT 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 481
BslFI GGGAC 2 cut(s) 32, 371
BslI CCNNNNNNNGG 1 cut(s) 620
BsmAI GTCTC 2 cut(s) 199, 621
BsmFI GGGAC 2 cut(s) 32, 371
BsmI GAATGC 1 cut(s) 1096
BsnI GGCC 2 cut(s) 848, 1121
Bsp1286I GDGCHC 2 cut(s) 27, 481
Bsp143I GATC 6 cut(s) 334, 385, 685, 983, 991, 1081
Bsp1720I GCTNAGC 2 cut(s) 60, 1072
BspACI CCGC 3 cut(s) 51, 65, 941
BspANI GGCC 2 cut(s) 848, 1121
BspCNI CTCAG 3 cut(s) 52, 730, 1084
BspDI ATCGAT 1 cut(s) 84
BspLI GGNNCC 5 cut(s) 24, 359, 387, 1023, 1083
BspPI GGATC 6 cut(s) 380, 393, 693, 991, 1076, 1089
BspT107I GGYRCC 2 cut(s) 22, 1021
BsrDI GCAATG 1 cut(s) 490
BsrI ACTGG 6 cut(s) 44, 177, 849, 849, 898, 1158
BssECI CCNNGG 2 cut(s) 18, 724
BssMI GATC 6 cut(s) 334, 385, 685, 983, 991, 1081
BssNAI GTATAC 1 cut(s) 522
Bst1107I GTATAC 1 cut(s) 522
Bst2UI CCWGG 2 cut(s) 19, 725
Bst4CI ACNGT 3 cut(s) 791, 1051, 1133
BstC8I GCNNGC 3 cut(s) 201, 481, 816
BstDEI CTNAG 6 cut(s) 60, 109, 738, 977, 1072, 1092
BstENI CCTNNNNNAGG 1 cut(s) 618
BstF5I GGATG 4 cut(s) 151, 415, 496, 889
BstKTI GATC 6 cut(s) 337, 388, 688, 986, 994, 1084
BstMAI GTCTC 2 cut(s) 199, 621
BstMBI GATC 6 cut(s) 334, 385, 685, 983, 991, 1081
BstNI CCWGG 2 cut(s) 19, 725
BstSCI CCNGG 2 cut(s) 17, 723
BstSLI GKGCMC 1 cut(s) 27
BstV2I GAAGAC 1 cut(s) 792
BstX2I RGATCY 4 cut(s) 385, 685, 983, 1081
BstYI RGATCY 4 cut(s) 385, 685, 983, 1081
BstZ17I GTATAC 1 cut(s) 522
Bsu15I ATCGAT 1 cut(s) 84
BsuRI GGCC 2 cut(s) 848, 1121
BsuTUI ATCGAT 1 cut(s) 84
BtsCI GGATG 4 cut(s) 151, 415, 496, 889
BtsIMutI CAGTG 4 cut(s) 184, 856, 1056, 1089
Cac8I GCNNGC 3 cut(s) 201, 481, 816
CaiI CAGNNNCTG 2 cut(s) 59, 803
Cfr13I GGNCC 2 cut(s) 358, 721
ClaI ATCGAT 1 cut(s) 84
Csp6I GTAC 2 cut(s) 707, 832
CviAII CATG 7 cut(s) 298, 442, 563, 600, 714, 948, 1077
CviQI GTAC 2 cut(s) 707, 832
DdeI CTNAG 6 cut(s) 60, 109, 738, 977, 1072, 1092
DpnI GATC 6 cut(s) 336, 387, 687, 985, 993, 1083
DpnII GATC 6 cut(s) 334, 385, 685, 983, 991, 1081
EaeI YGGCCR 1 cut(s) 846
Eco32I GATATC 2 cut(s) 6, 496
Eco47I GGWCC 2 cut(s) 358, 721
Eco57I CTGAAG 1 cut(s) 447
EcoNI CCTNNNNNAGG 1 cut(s) 618
EcoO109I RGGNCCY 1 cut(s) 358
EcoRII CCWGG 2 cut(s) 17, 723
EcoRV GATATC 2 cut(s) 6, 496
FaeI CATG 7 cut(s) 301, 445, 566, 603, 717, 951, 1080
FalI AAGNNNNNCTT 2 cut(s) 960, 992
FaqI GGGAC 2 cut(s) 32, 371
FatI CATG 7 cut(s) 297, 441, 562, 599, 713, 947, 1076
FauI CCCGC 1 cut(s) 58
FbaI TGATCA 1 cut(s) 991
FblI GTMKAC 1 cut(s) 521
Fnu4HI GCNGC 1 cut(s) 65
FokI GGATG 4 cut(s) 158, 422, 503, 896
Fsp4HI GCNGC 1 cut(s) 65
GluI GCNGC 1 cut(s) 65
HaeIII GGCC 2 cut(s) 848, 1121
Hin1II CATG 7 cut(s) 301, 445, 566, 603, 717, 951, 1080
HindIII AAGCTT 1 cut(s) 1069
HinfI GANTC 3 cut(s) 422, 800, 952
HphI GGTGA 3 cut(s) 200, 551, 674
Hpy166II GTNNAC 4 cut(s) 522, 559, 665, 1047
Hpy188I TCNGA 1 cut(s) 427
Hpy188III TCNNGA 3 cut(s) 397, 689, 1006
Hpy8I GTNNAC 4 cut(s) 522, 559, 665, 1047
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 4 cut(s) 272, 280, 394, 1011
HpyCH4III ACNGT 3 cut(s) 791, 1051, 1133
HpyCH4V TGCA 4 cut(s) 464, 594, 854, 947
HpyF3I CTNAG 6 cut(s) 60, 109, 738, 977, 1072, 1092
Hsp92II CATG 7 cut(s) 301, 445, 566, 603, 717, 951, 1080
Ksp22I TGATCA 1 cut(s) 991
Kzo9I GATC 6 cut(s) 334, 385, 685, 983, 991, 1081
LmnI GCTCC 2 cut(s) 255, 916
LweI GCATC 2 cut(s) 451, 928
MaeIII GTNAC 4 cut(s) 241, 791, 902, 1051
MalI GATC 6 cut(s) 336, 387, 687, 985, 993, 1083
MboI GATC 6 cut(s) 334, 385, 685, 983, 991, 1081
MboII GAAGA 7 cut(s) 89, 440, 545, 754, 757, 797, 965
MfeI CAATTG 1 cut(s) 999
MflI RGATCY 4 cut(s) 385, 685, 983, 1081
MhlI GDGCHC 2 cut(s) 27, 481
MlsI TGGCCA 1 cut(s) 848
MluCI AATT 6 cut(s) 259, 304, 637, 876, 999, 1142
MluNI TGGCCA 1 cut(s) 848
Mox20I TGGCCA 1 cut(s) 848
MscI TGGCCA 1 cut(s) 848
MseI TTAA 3 cut(s) 92, 873, 1174
MslI CAYNNNNRTG 1 cut(s) 911
Msp20I TGGCCA 1 cut(s) 848
MspA1I CMGCKG 1 cut(s) 1058
MspR9I CCNGG 2 cut(s) 19, 725
MunI CAATTG 1 cut(s) 999
Mva1269I GAATGC 1 cut(s) 1096
MvaI CCWGG 2 cut(s) 19, 725
NdeII GATC 6 cut(s) 334, 385, 685, 983, 991, 1081
NlaIII CATG 7 cut(s) 301, 445, 566, 603, 717, 951, 1080
NlaIV GGNNCC 5 cut(s) 24, 359, 387, 1023, 1083
NmeAIII GCCGAG 1 cut(s) 204
NmuCI GTSAC 3 cut(s) 241, 791, 1051
PctI GAATGC 1 cut(s) 1096
PfeI GAWTC 3 cut(s) 422, 800, 952
PkrI GCNGC 1 cut(s) 66
PpuMI RGGWCCY 1 cut(s) 358
PsiI TTATAA 1 cut(s) 1041
Psp5II RGGWCCY 1 cut(s) 358
Psp6I CCWGG 2 cut(s) 17, 723
PspGI CCWGG 2 cut(s) 17, 723
PspN4I GGNNCC 5 cut(s) 24, 359, 387, 1023, 1083
PspPI GGNCC 2 cut(s) 358, 721
PspPPI RGGWCCY 1 cut(s) 358
PstNI CAGNNNCTG 2 cut(s) 59, 803
PsuI RGATCY 4 cut(s) 385, 685, 983, 1081
PvuII CAGCTG 1 cut(s) 1058
RsaI GTAC 2 cut(s) 708, 833
RsaNI GTAC 2 cut(s) 707, 832
RseI CAYNNNNRTG 1 cut(s) 911
SaqAI TTAA 3 cut(s) 92, 873, 1174
SatI GCNGC 1 cut(s) 65
Sau3AI GATC 6 cut(s) 334, 385, 685, 983, 991, 1081
Sau96I GGNCC 2 cut(s) 358, 721
ScrFI CCNGG 2 cut(s) 19, 725
SduI GDGCHC 2 cut(s) 27, 481
SfaNI GCATC 2 cut(s) 451, 928
SinI GGWCC 2 cut(s) 358, 721
SmiMI CAYNNNNRTG 1 cut(s) 911
SmlI CTYRAG 3 cut(s) 395, 506, 966
SmoI CTYRAG 3 cut(s) 395, 506, 966
Sse9I AATT 6 cut(s) 259, 304, 637, 876, 999, 1142
SsiI CCGC 3 cut(s) 51, 65, 941
StyD4I CCNGG 2 cut(s) 17, 723
TaaI ACNGT 3 cut(s) 791, 1051, 1133
TaqI TCGA 1 cut(s) 84
TasI AATT 6 cut(s) 259, 304, 637, 876, 999, 1142
TatI WGTACW 2 cut(s) 706, 831
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 3 cut(s) 422, 800, 952
Tru1I TTAA 3 cut(s) 92, 873, 1174
Tru9I TTAA 3 cut(s) 92, 873, 1174
TscAI CASTG 4 cut(s) 184, 856, 1056, 1096
TseFI GTSAC 3 cut(s) 241, 791, 1051
Tsp45I GTSAC 3 cut(s) 241, 791, 1051
TspDTI ATGAA 2 cut(s) 717, 1089
TspRI CASTG 4 cut(s) 184, 856, 1056, 1096
VpaK11BI GGWCC 2 cut(s) 358, 721
XagI CCTNNNNNAGG 1 cut(s) 618
XapI RAATTY 2 cut(s) 637, 876
XmiI GTMKAC 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.