Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007129

Physical Location & Seq

Genomic Coordinates Forward (+)

7154290 .. 7155355

Gene Structure 1066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0089500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGATTTTGCCTATCTTCTTCATATTTTTTCTCACTTTCTCCTCTTCCTATGCTGCTGTGCAAGACTTCTGCGTCGCAGACTACACAGCTCCTCAAGGTCCTGCAGGCTACTCTTGCAAAAATCCTGCAAATGTCACTGCAGATGATTTCGTCTACTCTGGCCTAGCAGTTGCGGGTGACACCTCAAATTTAAACAAAGTTGGAATCAACCCTGCATTTGCTGGTCAGTTTCCTGGTCTGAATGGCCTTGGCCTTTCACTGGTGCGCGCGGACTTTGAAGTTGGTGGAGTTGGCCCGCTCCATTTACACCATGGAGCTTCAGAACTAATACTTGTTGTTCAAGGAACAATAATTGCAGGGTTCATTGCCACGGATAATACAGTCTATCTAAAAACTCTGAAGCAGGGTGATATAATGCTTCTTCCTCAAGGTTTGCTCCACTTTCAAAAAAATGGAGGTGATACACCAGCCCTTTTATTTGCTAGCTTCAATAGTGAAAACCCGGGTGTGCAGCTTCTGGAGATTGCATTATTTCAAAGCGATTTACCTACTGAGTTGATATCACAGACGACTTCCATCGACACTGCTGAGATTAAGAAACTTAAGGGTCTTTTTGGTGGTACTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001933 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005794 GO:0006325 GO:0006355 GO:0006356 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010646 GO:0012505 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032269 GO:0033135 GO:0033137 GO:0033139 GO:0033140 GO:0034770 GO:0034773 GO:0034968 GO:0035064 GO:0036211 GO:0042325 GO:0042326 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045597 GO:0045893 GO:0045935 GO:0045936 GO:0045943 GO:0046425 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0140030 GO:0140034 GO:1901564 GO:1901836 GO:1901838 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1904892 GO:1990889 GO:2000112 GO:2000736 GO:2000738 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

209

Amino Acids

22.06

Weight (kDa)

4.7

Isoelectric Point (pI)

22.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	55 - 198	1.7e-31	Cupin
Cupin_2	PF07883	90 - 160	2.1e-07	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18900 AT4G18905 AT4G18905 AT4G35370
fragaria_vesca	FvH4_1g12600 FvH4_5g33300 FvH4_5g33300 FvH4_5g33300 FvH4_5g33300
malus_domestica	MD12G1093200.v1.1 MD14G1085200.v1.1
prunus_persica	Prupe.7G160700_v2.0.a1 Prupe.7G160700_v2.0.a1
pyrus_communis	pycom12g07850 pycom14g07480
rosa_chinensis	RchiOBHm_Chr2g0100561
rosa_laevigata	RLG00000016985
rosa_multiflora	Rmu_sc0000528.1_g000008
rosa_roxburghii	Rroxscaffold_2G00142130
rosa_rugosa	Rorug02G0089500
rosa_samantha	Rh2AG138600 Rh2BG142000 Rh2CG144300 Rh2DG143700
rosa_wichuraiana	Rw2G010860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AccBSI	CCGCTC	1 cut(s)	298
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	2 cut(s)	267, 269
AciI	CCGC	3 cut(s)	173, 269, 296
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	2 cut(s)	303, 419
AfaI	GTAC	1 cut(s)	622
AfiI	CCNNNNNNNGG	1 cut(s)	259
AflII	CTTAAG	1 cut(s)	602
AgsI	TTSAA	5 cut(s)	278, 341, 446, 490, 536
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	4 cut(s)	89, 317, 486, 514
AluI	AGCT	4 cut(s)	89, 317, 486, 514
AlwNI	CAGNNNCTG	1 cut(s)	517
Ama87I	CYCGRG	1 cut(s)	502
AoxI	GGCC	4 cut(s)	160, 244, 250, 292
ApeKI	GCWGC	2 cut(s)	53, 511
ApoI	RAATTY	1 cut(s)	187
AspLEI	GCGC	2 cut(s)	267, 269
AspS9I	GGNCC	2 cut(s)	98, 293
AsuC2I	CCSGG	2 cut(s)	503, 504
AsuHPI	GGTGA	3 cut(s)	188, 419, 470
AsuNHI	GCTAGC	1 cut(s)	482
AvaI	CYCGRG	1 cut(s)	502
AvaII	GGWCC	1 cut(s)	98
BbvI	GCAGC	2 cut(s)	40, 523
BccI	CCATC	1 cut(s)	584
BciT130I	CCWGG	1 cut(s)	234
BcnI	CCSGG	2 cut(s)	503, 504
BfaI	CTAG	2 cut(s)	164, 483
BfmI	CTRYAG	2 cut(s)	102, 138
BfrI	CTTAAG	1 cut(s)	602
BisI	GCNGC	2 cut(s)	54, 512
BlsI	GCNGC	2 cut(s)	55, 513
Bme1390I	CCNGG	3 cut(s)	234, 503, 504
Bme18I	GGWCC	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	502
BmgT120I	GGNCC	2 cut(s)	98, 293
BmrFI	CCNGG	3 cut(s)	234, 503, 504
BmtI	GCTAGC	1 cut(s)	486
BpmI	CTGGAG	1 cut(s)	539
BpuEI	CTTGAG	2 cut(s)	78, 411
BpuMI	CCSGG	2 cut(s)	503, 504
BsaJI	CCNNGG	4 cut(s)	247, 310, 369, 502
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	264
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	4 cut(s)	247, 310, 369, 502
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	2 cut(s)	543, 579
BseNI	ACTGG	1 cut(s)	264
BsePI	GCGCGC	1 cut(s)	265
BseRI	GAGGAG	2 cut(s)	31, 81
BseXI	GCAGC	2 cut(s)	40, 523
BsgI	GTGCAG	1 cut(s)	530
Bsh1236I	CGCG	2 cut(s)	267, 269
BshFI	GGCC	4 cut(s)	162, 246, 252, 294
BsiHKCI	CYCGRG	1 cut(s)	502
BsiSI	CCGG	1 cut(s)	503
BslI	CCNNNNNNNGG	1 cut(s)	259
BsnI	GGCC	4 cut(s)	162, 246, 252, 294
BsoBI	CYCGRG	1 cut(s)	502
Bsp19I	CCATGG	1 cut(s)	310
BspACI	CCGC	3 cut(s)	173, 269, 296
BspANI	GGCC	4 cut(s)	162, 246, 252, 294
BspCNI	CTCAG	2 cut(s)	544, 580
BspFNI	CGCG	2 cut(s)	267, 269
BspMAI	CTGCAG	2 cut(s)	106, 142
BspOI	GCTAGC	1 cut(s)	486
BspTI	CTTAAG	1 cut(s)	602
BsrBI	CCGCTC	1 cut(s)	298
BsrDI	GCAATG	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	264
BssECI	CCNNGG	4 cut(s)	247, 310, 369, 502
BssHII	GCGCGC	1 cut(s)	265
BssT1I	CCWWGG	2 cut(s)	247, 310
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	1 cut(s)	49
BstAFI	CTTAAG	1 cut(s)	602
BstC8I	GCNNGC	4 cut(s)	106, 267, 296, 484
BstDEI	CTNAG	2 cut(s)	552, 588
BstDSI	CCRYGG	2 cut(s)	310, 369
BstFNI	CGCG	2 cut(s)	267, 269
BstHHI	GCGC	2 cut(s)	267, 269
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	3 cut(s)	232, 501, 502
BstSFI	CTRYAG	2 cut(s)	102, 138
BstUI	CGCG	2 cut(s)	267, 269
BstV1I	GCAGC	2 cut(s)	40, 523
BsuRI	GGCC	4 cut(s)	162, 246, 252, 294
BtgI	CCRYGG	2 cut(s)	310, 369
BtsI	GCAGTG	2 cut(s)	135, 582
BtsIMutI	CAGTG	3 cut(s)	135, 257, 582
Cac8I	GCNNGC	4 cut(s)	106, 267, 296, 484
CaiI	CAGNNNCTG	1 cut(s)	517
CfoI	GCGC	2 cut(s)	267, 269
Cfr13I	GGNCC	2 cut(s)	98, 293
Cfr9I	CCCGGG	1 cut(s)	502
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	621
CviAII	CATG	1 cut(s)	311
CviQI	GTAC	1 cut(s)	621
DdeI	CTNAG	2 cut(s)	552, 588
DraI	TTTAAA	1 cut(s)	192
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Eco130I	CCWWGG	2 cut(s)	247, 310
Eco32I	GATATC	1 cut(s)	561
Eco47I	GGWCC	1 cut(s)	98
Eco57I	CTGAAG	2 cut(s)	303, 419
Eco88I	CYCGRG	1 cut(s)	502
EcoO109I	RGGNCCY	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	232
EcoRV	GATATC	1 cut(s)	561
EcoT14I	CCWWGG	2 cut(s)	247, 310
ErhI	CCWWGG	2 cut(s)	247, 310
FaeI	CATG	1 cut(s)	314
FaiI	YATR	4 cut(s)	23, 51, 312, 413
FatI	CATG	1 cut(s)	310
FauI	CCCGC	2 cut(s)	166, 303
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	2 cut(s)	54, 512
Fsp4HI	GCNGC	2 cut(s)	54, 512
FspBI	CTAG	2 cut(s)	164, 483
GlaI	GCGC	2 cut(s)	266, 268
GluI	GCNGC	2 cut(s)	54, 512
GsuI	CTGGAG	1 cut(s)	539
HaeIII	GGCC	4 cut(s)	162, 246, 252, 294
HapII	CCGG	1 cut(s)	503
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	2 cut(s)	267, 269
Hin1II	CATG	1 cut(s)	314
Hin6I	GCGC	2 cut(s)	265, 267
HinP1I	GCGC	2 cut(s)	265, 267
HinfI	GANTC	1 cut(s)	204
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	3 cut(s)	188, 419, 470
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	3 cut(s)	240, 322, 399
Hpy188III	TCNNGA	1 cut(s)	518
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4V	TGCA	9 cut(s)	61, 104, 117, 128, 140, 215, 356, 511, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpyF3I	CTNAG	2 cut(s)	552, 588
Hsp92II	CATG	1 cut(s)	314
HspAI	GCGC	2 cut(s)	265, 267
LmnI	GCTCC	4 cut(s)	94, 303, 314, 441
Lsp1109I	GCAGC	2 cut(s)	40, 523
MaeI	CTAG	2 cut(s)	164, 483
MaeIII	GTNAC	2 cut(s)	133, 176
MbiI	CCGCTC	1 cut(s)	298
MboII	GAAGA	4 cut(s)	7, 10, 36, 413
MluCI	AATT	3 cut(s)	187, 351, 625
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	5 cut(s)	52, 102, 193, 435, 449
MseI	TTAA	3 cut(s)	191, 594, 603
MspCI	CTTAAG	1 cut(s)	602
MspI	CCGG	1 cut(s)	503
MspR9I	CCNGG	3 cut(s)	234, 503, 504
MvaI	CCWGG	1 cut(s)	234
MvnI	CGCG	2 cut(s)	267, 269
MwoI	GCNNNNNNNGC	1 cut(s)	114
NciI	CCSGG	2 cut(s)	503, 504
NcoI	CCATGG	1 cut(s)	310
NheI	GCTAGC	1 cut(s)	482
NlaIII	CATG	1 cut(s)	314
NmuCI	GTSAC	2 cut(s)	133, 176
PauI	GCGCGC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	204
PkrI	GCNGC	2 cut(s)	55, 513
PpuMI	RGGWCCY	1 cut(s)	98
Psp5II	RGGWCCY	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspPI	GGNCC	2 cut(s)	98, 293
PspPPI	RGGWCCY	1 cut(s)	98
PstI	CTGCAG	2 cut(s)	106, 142
PstNI	CAGNNNCTG	1 cut(s)	517
PteI	GCGCGC	1 cut(s)	265
RsaI	GTAC	1 cut(s)	622
RsaNI	GTAC	1 cut(s)	621
SaqAI	TTAA	3 cut(s)	191, 594, 603
SatI	GCNGC	2 cut(s)	54, 512
Sau96I	GGNCC	2 cut(s)	98, 293
SbfI	CCTGCAGG	1 cut(s)	106
ScrFI	CCNGG	3 cut(s)	234, 503, 504
SdaI	CCTGCAGG	1 cut(s)	106
SetI	ASST	9 cut(s)	91, 100, 185, 319, 433, 460, 488, 516, 550
SfcI	CTRYAG	2 cut(s)	102, 138
SinI	GGWCC	1 cut(s)	98
SmaI	CCCGGG	1 cut(s)	504
SmlI	CTYRAG	3 cut(s)	93, 426, 602
SmoI	CTYRAG	3 cut(s)	93, 426, 602
Sse8387I	CCTGCAGG	1 cut(s)	106
Sse9I	AATT	3 cut(s)	187, 351, 625
SsiI	CCGC	3 cut(s)	173, 269, 296
SspMI	CTAG	2 cut(s)	164, 483
StyD4I	CCNGG	3 cut(s)	232, 501, 502
StyI	CCWWGG	2 cut(s)	247, 310
TaaI	ACNGT	1 cut(s)	382
TaqI	TCGA	1 cut(s)	579
TasI	AATT	3 cut(s)	187, 351, 625
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	3 cut(s)	191, 594, 603
Tru9I	TTAA	3 cut(s)	191, 594, 603
TscAI	CASTG	3 cut(s)	142, 264, 589
TseFI	GTSAC	2 cut(s)	133, 176
TseI	GCWGC	2 cut(s)	53, 511
Tsp45I	GTSAC	2 cut(s)	133, 176
TspDTI	ATGAA	2 cut(s)	10, 352
TspGWI	ACGGA	1 cut(s)	386
TspMI	CCCGGG	1 cut(s)	502
TspRI	CASTG	3 cut(s)	142, 264, 589
Vha464I	CTTAAG	1 cut(s)	602
VpaK11BI	GGWCC	1 cut(s)	98
XapI	RAATTY	1 cut(s)	187
XcmI	CCANNNNNNNNNTGG	1 cut(s)	308
XmaI	CCCGGG	1 cut(s)	502
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	2 cut(s)	164, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.