FvH4_1g12741

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014905
Physical Location & Seq
Reverse (-)
7017418 .. 7020906
3489 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12741.t1

Sequence Viewer

Length: 1515 bp
ATGATGTTCTCCACCAAAGAAATGCCTTCTCCTTCATCATTGTTCTCTGCCTATGCATCCATGGCAGCCTCAATGATGCTATTTAGATCCATGGCCAATGATCTTGTACCTCAGCCAGTTAGAGGCTACCTTCACTCAACTCTCCGCTACATCTTCAAAAATCACTCCACTAAGCTCACACTAGTCATTGAGGAATCAAATAGCATAAGCCGAAACCAACTCTATGATGCTGCAGAGGTTTACTTGTGCACTAAGATCAGTCCCAAGACTGACAGGCTCAAAATCAGCAAAACCCCGAAAGCAAAGAACATAACAATTCGGCTTGAGAAAGGTGAGAAGTTGGTGGATGTCTATGAAGGGATTGTGCTCCAATGGAGGTTTGTTTGTGCCGAGTCTGGACAGAACAACCCCAATGATCCATTTTCGCCTCCAAGGCCTGAGAAGAGGTTCTTTGAGCTCACATTCCACAAGAATCACAAGGAAAAAGTCTTGGAATCCTATGTGCATCATGTTCTTGAAAAGGCCAAAGCAATAAAAGATGAAGAGAGGGTCTTGAAGATGTACACATTAAACAATTCCGGCCACCACCACTCTTACAATGGCTTCAAGTGGGACTCCATCAACCTCGAACACCCTTCAACATTTGAGACTCTAGCCATGGATTTGGAGCTGAAGAATGCTGTTATTGAAGACCTTAACAGGTTTGTGAAGAGGAAGGAGTTCTATAAGAAAGTAGGGAGGGCATGGAAAAGAGGGTACTTGTTGTATGGTCCACCAGGCACCGGAAAATCAAGCTTGGTTGCAGCCATGGCTAATTATCTCAAGTTTGATGTCTATGACCTGCAGCTGGCTAATATTTTTCGTGATTCTGACCTGAGAAAACTGTTGCTGGCCACCGCAAATCGGTCCATTCTTGTGATTGAAGACATTGACTGTAGTGCTGATTTGCCTGTTCGGATTCGACATGAAGATGGACGAAAGCAAGTCCCTGATGTACAGTTAACACTATCTGGACTACTGAACTTCATAGATGGACTGTGGTCAAGTTGTGGAGATGAGAGGATCATAATATTTACCACTAACCACAAGGAGAGGTTAGACCCTGCTCTTTTGCGCCCTGGACGCATGGATATGCATATTCACATGTCCTATTGCACATACCATGGCTTCCAACTCTTGGCCTCAAACTACTTGGATATCCAGAACCACCACCACCTCTATGATGAAATCGAAGGCTTACTGAAAGAAACAGAGGTGACTCCTGCGCAAGTAGCAGAGGAGTTGATGAAGAGCGAAGAAGTTGATGTTGCACTTGAAGGCCTGGTCAAGCTTTTGAAGCGGAAGAAGATGGAAGGCGATGAATGTGAGGTTGAGAATGAAAAGAAGATTGGTGCTAAAGGAGCAAAGAGGCAGAAACCTGAGAACAAACTGAAGAAACCTGTGAGGAATAGTAGGAAAAACACCACAAAAAGATGCAGCAACCGTTTATCAGCAAAAGCAAACCATTATGCATAA

Protein Analysis

505

Amino Acids

57.96

Weight (kDa)

9.13

Isoelectric Point (pI)

49.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 36 - 129 2.3e-24 Domain associated at C-terminal with AAA
AAA PF00004 253 - 383 4.7e-20 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 385 - 451 5.3e-23 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014905)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17760 AT5G17760
fragaria_vesca FvH4_1g12741
malus_domestica MD02G1141700.v1.1 MD15G1254600.v1.1
prunus_persica Prupe.7G159000_v2.0.a1
pyrus_communis pycom02g11170 pycom15g22370
rosa_chinensis RchiOBHm_Chr2g0100821
rosa_laevigata RLG00000017014
rosa_multiflora Rmu_sc0001659.1_g000021
rosa_roxburghii Rroxscaffold_2G00141830
rosa_rugosa Rorug02G0093100
rosa_samantha Rh2CG146700 Rh2DG146100
rosa_wichuraiana Rw2G011010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1266
Acc36I ACCTGC 1 cut(s) 849
AccB1I GGYRCC 1 cut(s) 779
AccB7I CCANNNNNTGG 1 cut(s) 1177
AciI CCGC 3 cut(s) 145, 897, 1339
AclWI GGATC 3 cut(s) 81, 410, 1070
AcoI YGGCCR 3 cut(s) 93, 580, 891
AcuI CTGAAG 2 cut(s) 692, 1451
AfaI GTAC 4 cut(s) 108, 563, 758, 996
AfiI CCNNNNNNNGG 5 cut(s) 122, 782, 847, 903, 1177
AflIII ACRYGT 1 cut(s) 1143
AgsI TTSAA 9 cut(s) 157, 518, 556, 607, 639, 689, 923, 1316, 1336
AhlI ACTAGT 1 cut(s) 181
AjnI CCWGG 3 cut(s) 775, 1117, 1320
AjuI GAANNNNNNNTTGG 2 cut(s) 1371, 1403
AluBI AGCT 6 cut(s) 175, 457, 670, 795, 847, 1330
AluI AGCT 6 cut(s) 175, 457, 670, 795, 847, 1330
Alw21I GWGCWC 3 cut(s) 251, 369, 459
Alw26I GTCTC 1 cut(s) 641
Alw44I GTGCAC 1 cut(s) 247
AlwI GGATC 3 cut(s) 81, 410, 1070
AoxI GGCC 7 cut(s) 93, 434, 522, 580, 891, 1179, 1318
ApaLI GTGCAC 1 cut(s) 247
ApeKI GCWGC 5 cut(s) 65, 230, 803, 844, 1476
Asp700I GAANNNNTTC 2 cut(s) 446, 719
AspLEI GCGC 2 cut(s) 1116, 1267
AspS9I GGNCC 2 cut(s) 770, 906
AsuHPI GGTGA 2 cut(s) 344, 1267
AvaII GGWCC 2 cut(s) 770, 906
BaeGI GKGCMC 1 cut(s) 251
BalI TGGCCA 2 cut(s) 95, 893
BanI GGYRCC 1 cut(s) 779
BanII GRGCYC 1 cut(s) 459
BbsI GAAGAC 2 cut(s) 696, 930
Bbv12I GWGCWC 3 cut(s) 251, 369, 459
BbvCI CCTCAGC 1 cut(s) 111
BbvI GCAGC 5 cut(s) 77, 217, 815, 856, 1488
BccI CCATC 4 cut(s) 626, 965, 1025, 1342
BciT130I CCWGG 3 cut(s) 777, 1119, 1322
BcoDI GTCTC 1 cut(s) 641
BcuI ACTAGT 1 cut(s) 181
BfaI CTAG 2 cut(s) 182, 653
BfmI CTRYAG 3 cut(s) 231, 842, 934
BfuAI ACCTGC 1 cut(s) 849
BglI GCCNNNNNGGC 1 cut(s) 433
BisI GCNGC 5 cut(s) 66, 231, 804, 845, 1477
BlsI GCNGC 5 cut(s) 67, 232, 805, 846, 1478
Bme1390I CCNGG 3 cut(s) 777, 1119, 1322
Bme18I GGWCC 2 cut(s) 770, 906
BmgT120I GGNCC 2 cut(s) 770, 906
BmiI GGNNCC 1 cut(s) 781
BmrFI CCNGG 3 cut(s) 777, 1119, 1322
BmsI GCATC 5 cut(s) 65, 66, 217, 514, 1463
BoxI GACNNNNGTC 1 cut(s) 1039
BpiI GAAGAC 2 cut(s) 696, 930
Bpu10I CCTNAGC 1 cut(s) 111
BpuEI CTTGAG 2 cut(s) 344, 806
BsaJI CCNNGG 7 cut(s) 60, 90, 431, 657, 807, 1117, 1162
BsaWI WCCGGW 1 cut(s) 782
Bsc4I CCNNNNNNNGG 5 cut(s) 122, 782, 847, 903, 1177
Bse1I ACTGG 1 cut(s) 116
BseBI CCWGG 3 cut(s) 777, 1119, 1322
BseDI CCNNGG 7 cut(s) 60, 90, 431, 657, 807, 1117, 1162
BseGI GGATG 2 cut(s) 56, 352
BseLI CCNNNNNNNGG 5 cut(s) 122, 782, 847, 903, 1177
BseMII CTCAG 4 cut(s) 125, 429, 866, 1410
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 1292
BseSI GKGCMC 1 cut(s) 251
BseXI GCAGC 5 cut(s) 77, 217, 815, 856, 1488
BshFI GGCC 7 cut(s) 95, 436, 524, 582, 893, 1181, 1320
BshNI GGYRCC 1 cut(s) 779
BsiHKAI GWGCWC 3 cut(s) 251, 369, 459
BsiSI CCGG 2 cut(s) 579, 783
BslFI GGGAC 3 cut(s) 246, 626, 971
BslI CCNNNNNNNGG 5 cut(s) 122, 782, 847, 903, 1177
BsmAI GTCTC 1 cut(s) 641
BsmFI GGGAC 3 cut(s) 246, 626, 971
BsmI GAATGC 1 cut(s) 682
BsnI GGCC 7 cut(s) 95, 436, 524, 582, 893, 1181, 1320
Bsp1286I GDGCHC 3 cut(s) 251, 369, 459
Bsp1407I TGTACA 2 cut(s) 561, 994
Bsp143I GATC 5 cut(s) 86, 100, 255, 415, 1062
Bsp19I CCATGG 5 cut(s) 60, 90, 657, 807, 1162
BspACI CCGC 3 cut(s) 145, 897, 1339
BspANI GGCC 7 cut(s) 95, 436, 524, 582, 893, 1181, 1320
BspCNI CTCAG 4 cut(s) 124, 430, 867, 1411
BspLI GGNNCC 1 cut(s) 781
BspMAI CTGCAG 2 cut(s) 235, 846
BspMI ACCTGC 1 cut(s) 849
BspPI GGATC 3 cut(s) 81, 410, 1070
BspQI GCTCTTC 1 cut(s) 1283
BspT107I GGYRCC 1 cut(s) 779
BsrGI TGTACA 2 cut(s) 561, 994
BsrI ACTGG 1 cut(s) 116
BssECI CCNNGG 7 cut(s) 60, 90, 431, 657, 807, 1117, 1162
BssMI GATC 5 cut(s) 86, 100, 255, 415, 1062
BssT1I CCWWGG 6 cut(s) 60, 90, 431, 657, 807, 1162
Bst2UI CCWGG 3 cut(s) 777, 1119, 1322
Bst4CI ACNGT 5 cut(s) 885, 935, 999, 1038, 1484
Bst6I CTCTTC 4 cut(s) 437, 537, 704, 1283
BstAUI TGTACA 2 cut(s) 561, 994
BstC8I GCNNGC 2 cut(s) 849, 891
BstDEI CTNAG 6 cut(s) 111, 171, 252, 438, 875, 1419
BstDSI CCRYGG 5 cut(s) 60, 90, 657, 807, 1162
BstF5I GGATG 2 cut(s) 56, 352
BstHHI GCGC 2 cut(s) 1116, 1267
BstKTI GATC 5 cut(s) 89, 103, 258, 418, 1065
BstMAI GTCTC 1 cut(s) 641
BstMBI GATC 5 cut(s) 86, 100, 255, 415, 1062
BstMWI GCNNNNNNNGC 7 cut(s) 62, 433, 809, 1122, 1271, 1336, 1400
BstNI CCWGG 3 cut(s) 777, 1119, 1322
BstNSI RCATGY 1 cut(s) 1147
BstPAI GACNNNNGTC 1 cut(s) 1039
BstSCI CCNGG 3 cut(s) 775, 1117, 1320
BstSFI CTRYAG 3 cut(s) 231, 842, 934
BstSLI GKGCMC 1 cut(s) 251
BstV1I GCAGC 5 cut(s) 77, 217, 815, 856, 1488
BstV2I GAAGAC 2 cut(s) 696, 930
BstX2I RGATCY 1 cut(s) 86
BstXI CCANNNNNNTGG 1 cut(s) 664
BstYI RGATCY 1 cut(s) 86
BsuRI GGCC 7 cut(s) 95, 436, 524, 582, 893, 1181, 1320
BtgI CCRYGG 5 cut(s) 60, 90, 657, 807, 1162
BtgZI GCGATG 1 cut(s) 1371
BtsCI GGATG 2 cut(s) 56, 352
BveI ACCTGC 1 cut(s) 849
Cac8I GCNNGC 2 cut(s) 849, 891
CfoI GCGC 2 cut(s) 1116, 1267
Cfr13I GGNCC 2 cut(s) 770, 906
CseI GACGC 1 cut(s) 1131
Csp6I GTAC 4 cut(s) 107, 562, 757, 995
CviQI GTAC 4 cut(s) 107, 562, 757, 995
DdeI CTNAG 6 cut(s) 111, 171, 252, 438, 875, 1419
DpnI GATC 5 cut(s) 88, 102, 257, 417, 1064
DpnII GATC 5 cut(s) 86, 100, 255, 415, 1062
EaeI YGGCCR 3 cut(s) 93, 580, 891
Eam1104I CTCTTC 4 cut(s) 437, 537, 704, 1283
EarI CTCTTC 4 cut(s) 437, 537, 704, 1283
Ecl136II GAGCTC 1 cut(s) 457
Eco130I CCWWGG 6 cut(s) 60, 90, 431, 657, 807, 1162
Eco147I AGGCCT 2 cut(s) 436, 1320
Eco24I GRGCYC 1 cut(s) 459
Eco32I GATATC 1 cut(s) 1198
Eco47I GGWCC 2 cut(s) 770, 906
Eco53kI GAGCTC 1 cut(s) 457
Eco57I CTGAAG 2 cut(s) 692, 1451
EcoICRI GAGCTC 1 cut(s) 457
EcoRII CCWGG 3 cut(s) 775, 1117, 1320
EcoRV GATATC 1 cut(s) 1198
EcoT14I CCWWGG 6 cut(s) 60, 90, 431, 657, 807, 1162
EcoT22I ATGCAT 3 cut(s) 58, 1137, 1513
EcoT38I GRGCYC 1 cut(s) 459
ErhI CCWWGG 6 cut(s) 60, 90, 431, 657, 807, 1162
FalI AAGNNNNNCTT 2 cut(s) 434, 466
FaqI GGGAC 3 cut(s) 246, 626, 971
Fnu4HI GCNGC 5 cut(s) 66, 231, 804, 845, 1477
FokI GGATG 2 cut(s) 43, 359
FriOI GRGCYC 1 cut(s) 459
Fsp4HI GCNGC 5 cut(s) 66, 231, 804, 845, 1477
FspBI CTAG 2 cut(s) 182, 653
FspI TGCGCA 1 cut(s) 1266
GlaI GCGC 2 cut(s) 1115, 1266
GluI GCNGC 5 cut(s) 66, 231, 804, 845, 1477
HaeIII GGCC 7 cut(s) 95, 436, 524, 582, 893, 1181, 1320
HapII CCGG 2 cut(s) 579, 783
HgaI GACGC 1 cut(s) 1131
HhaI GCGC 2 cut(s) 1116, 1267
Hin6I GCGC 2 cut(s) 1114, 1265
HinP1I GCGC 2 cut(s) 1114, 1265
HincII GTYRAC 1 cut(s) 1002
HindII GTYRAC 1 cut(s) 1002
HindIII AAGCTT 2 cut(s) 793, 1328
HinfI GANTC 9 cut(s) 194, 392, 472, 494, 614, 649, 866, 958, 1258
HpaI GTTAAC 1 cut(s) 1002
HpaII CCGG 2 cut(s) 579, 783
HphI GGTGA 2 cut(s) 344, 1267
Hpy166II GTNNAC 5 cut(s) 241, 249, 564, 773, 1002
Hpy188I TCNGA 2 cut(s) 871, 957
Hpy188III TCNNGA 6 cut(s) 396, 515, 553, 863, 1011, 1201
Hpy8I GTNNAC 5 cut(s) 241, 249, 564, 773, 1002
HpyAV CCTTC 9 cut(s) 36, 42, 140, 350, 645, 709, 1226, 1310, 1346
HpyCH4III ACNGT 5 cut(s) 885, 935, 999, 1038, 1484
HpyF10VI GCNNNNNNNGC 7 cut(s) 62, 433, 809, 1122, 1271, 1336, 1400
HpyF3I CTNAG 6 cut(s) 111, 171, 252, 438, 875, 1419
HspAI GCGC 2 cut(s) 1114, 1265
KspAI GTTAAC 1 cut(s) 1002
Kzo9I GATC 5 cut(s) 86, 100, 255, 415, 1062
LguI GCTCTTC 1 cut(s) 1283
LmnI GCTCC 3 cut(s) 372, 667, 1400
Lsp1109I GCAGC 5 cut(s) 77, 217, 815, 856, 1488
LweI GCATC 5 cut(s) 65, 66, 217, 514, 1463
MaeI CTAG 2 cut(s) 182, 653
MaeIII GTNAC 1 cut(s) 1255
MalI GATC 5 cut(s) 88, 102, 257, 417, 1064
MboI GATC 5 cut(s) 86, 100, 255, 415, 1062
MflI RGATCY 1 cut(s) 86
MhlI GDGCHC 3 cut(s) 251, 369, 459
MlsI TGGCCA 2 cut(s) 95, 893
MluCI AATT 3 cut(s) 315, 574, 814
MluNI TGGCCA 2 cut(s) 95, 893
MlyI GAGTC 4 cut(s) 401, 608, 643, 1252
MmeI TCCRAC 1 cut(s) 1195
Mox20I TGGCCA 2 cut(s) 95, 893
Mph1103I ATGCAT 3 cut(s) 58, 1137, 1513
MroXI GAANNNNTTC 2 cut(s) 446, 719
MscI TGGCCA 2 cut(s) 95, 893
MseI TTAA 3 cut(s) 569, 696, 1001
MslI CAYNNNNRTG 4 cut(s) 914, 969, 1130, 1218
Msp20I TGGCCA 2 cut(s) 95, 893
MspA1I CMGCKG 1 cut(s) 847
MspI CCGG 2 cut(s) 579, 783
MspR9I CCNGG 3 cut(s) 777, 1119, 1322
Mva1269I GAATGC 1 cut(s) 682
MvaI CCWGG 3 cut(s) 777, 1119, 1322
MwoI GCNNNNNNNGC 7 cut(s) 62, 433, 809, 1122, 1271, 1336, 1400
NcoI CCATGG 5 cut(s) 60, 90, 657, 807, 1162
NdeII GATC 5 cut(s) 86, 100, 255, 415, 1062
NlaIV GGNNCC 1 cut(s) 781
NmeAIII GCCGAG 1 cut(s) 415
NmuCI GTSAC 1 cut(s) 1255
NsbI TGCGCA 1 cut(s) 1266
NsiI ATGCAT 3 cut(s) 58, 1137, 1513
NspI RCATGY 1 cut(s) 1147
PceI AGGCCT 2 cut(s) 436, 1320
PciI ACATGT 1 cut(s) 1143
PciSI GCTCTTC 1 cut(s) 1283
PctI GAATGC 1 cut(s) 682
PdmI GAANNNNTTC 2 cut(s) 446, 719
PfeI GAWTC 5 cut(s) 194, 472, 494, 866, 958
PflMI CCANNNNNTGG 1 cut(s) 1177
PkrI GCNGC 5 cut(s) 67, 232, 805, 846, 1478
PleI GAGTC 4 cut(s) 400, 608, 643, 1252
PpsI GAGTC 4 cut(s) 400, 608, 643, 1252
PscI ACATGT 1 cut(s) 1143
PshAI GACNNNNGTC 1 cut(s) 1039
Psp124BI GAGCTC 1 cut(s) 459
Psp6I CCWGG 3 cut(s) 775, 1117, 1320
PspGI CCWGG 3 cut(s) 775, 1117, 1320
PspN4I GGNNCC 1 cut(s) 781
PspPI GGNCC 2 cut(s) 770, 906
PstI CTGCAG 2 cut(s) 235, 846
PsuI RGATCY 1 cut(s) 86
PvuII CAGCTG 1 cut(s) 847
RsaI GTAC 4 cut(s) 108, 563, 758, 996
RsaNI GTAC 4 cut(s) 107, 562, 757, 995
RseI CAYNNNNRTG 4 cut(s) 914, 969, 1130, 1218
SacI GAGCTC 1 cut(s) 459
SapI GCTCTTC 1 cut(s) 1283
SaqAI TTAA 3 cut(s) 569, 696, 1001
SatI GCNGC 5 cut(s) 66, 231, 804, 845, 1477
Sau3AI GATC 5 cut(s) 86, 100, 255, 415, 1062
Sau96I GGNCC 2 cut(s) 770, 906
SchI GAGTC 4 cut(s) 401, 608, 643, 1252
ScrFI CCNGG 3 cut(s) 777, 1119, 1322
SduI GDGCHC 3 cut(s) 251, 369, 459
SfaNI GCATC 5 cut(s) 65, 66, 217, 514, 1463
SfcI CTRYAG 3 cut(s) 231, 842, 934
SinI GGWCC 2 cut(s) 770, 906
SmiMI CAYNNNNRTG 4 cut(s) 914, 969, 1130, 1218
SmlI CTYRAG 2 cut(s) 323, 821
SmoI CTYRAG 2 cut(s) 323, 821
SpeI ACTAGT 1 cut(s) 181
Sse9I AATT 3 cut(s) 315, 574, 814
SseBI AGGCCT 2 cut(s) 436, 1320
SsiI CCGC 3 cut(s) 145, 897, 1339
SspI AATATT 2 cut(s) 856, 1071
SspMI CTAG 2 cut(s) 182, 653
SstI GAGCTC 1 cut(s) 459
StuI AGGCCT 2 cut(s) 436, 1320
StyD4I CCNGG 3 cut(s) 775, 1117, 1320
StyI CCWWGG 6 cut(s) 60, 90, 431, 657, 807, 1162
TaaI ACNGT 5 cut(s) 885, 935, 999, 1038, 1484
TaqI TCGA 3 cut(s) 627, 961, 1230
TaqII GACCGA 1 cut(s) 894
TasI AATT 3 cut(s) 315, 574, 814
TatI WGTACW 2 cut(s) 561, 994
TfiI GAWTC 5 cut(s) 194, 472, 494, 866, 958
Tru1I TTAA 3 cut(s) 569, 696, 1001
Tru9I TTAA 3 cut(s) 569, 696, 1001
TseFI GTSAC 1 cut(s) 1255
TseI GCWGC 5 cut(s) 65, 230, 803, 844, 1476
Tsp45I GTSAC 1 cut(s) 1255
TspDTI ATGAA 9 cut(s) 24, 369, 555, 981, 1015, 1239, 1301, 1374, 1392
Van91I CCANNNNNTGG 1 cut(s) 1177
VneI GTGCAC 1 cut(s) 247
VpaK11BI GGWCC 2 cut(s) 770, 906
XceI RCATGY 1 cut(s) 1147
XcmI CCANNNNNNNNNTGG 1 cut(s) 596
XmnI GAANNNNTTC 2 cut(s) 446, 719
XspI CTAG 2 cut(s) 182, 653
Zsp2I ATGCAT 3 cut(s) 58, 1137, 1513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.