Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014905

Physical Location & Seq

Genomic Coordinates Reverse (-)

7647608 .. 7648475

Gene Structure 868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0093100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGAATGCTCAGGTCCGGCAGAGACCACTTGGCCTCCATTTTCGGCTTTCGGAGGTGGACCCACATCGCCGCCATGCCTCCGCCGTCGTTGTTTGGGTCTGTTCAGAACCAGAACCAAATCGCTTCCCCACATTTTGTTCTGTCGGAATTCGATCGGGAGGCGGACAAGGACAACCGCACCGGTTTCGGGTTCCCAAGTATCACCTTCGGTGGTTCCATGGAGCTCATGGCTGTGCCCAAGAGGAAGATTTCTCCCCACAAGAGAGGCATAAGGAATGGCCCAAAGGCTTTGAAACCTGTTCGGGTTATAATCCGATGCAAGAGTTGTGGTCGAGTCAAGCTGCCACACTATTATTGTTGCAGTGGACATAAGGGAAATGACAGTAATGGCTCAATTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

134

Amino Acids

14.85

Weight (kDa)

10.4

Isoelectric Point (pI)

57.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L32p	PF01783	78 - 124	2.5e-10	Ribosomal L32p protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17760 AT5G17760
fragaria_vesca	FvH4_1g12741
malus_domestica	MD02G1141700.v1.1 MD15G1254600.v1.1
prunus_persica	Prupe.7G159000_v2.0.a1
pyrus_communis	pycom02g11170 pycom15g22370
rosa_chinensis	RchiOBHm_Chr2g0100821
rosa_laevigata	RLG00000017014
rosa_multiflora	Rmu_sc0001659.1_g000021
rosa_roxburghii	Rroxscaffold_2G00141830
rosa_rugosa	Rorug02G0093100
rosa_samantha	Rh2CG146700 Rh2DG146100
rosa_wichuraiana	Rw2G011010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
AciI	CCGC	4 cut(s)	72, 83, 164, 178
AcsI	RAATTY	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	189
AgeI	ACCGGT	1 cut(s)	182
AgsI	TTSAA	1 cut(s)	295
AluBI	AGCT	2 cut(s)	226, 343
AluI	AGCT	2 cut(s)	226, 343
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	18
AoxI	GGCC	2 cut(s)	33, 280
ApeKI	GCWGC	1 cut(s)	343
ApoI	RAATTY	1 cut(s)	149
AsiGI	ACCGGT	1 cut(s)	182
AspS9I	GGNCC	3 cut(s)	15, 60, 281
AsuHPI	GGTGA	1 cut(s)	196
AvaII	GGWCC	2 cut(s)	15, 60
BaeGI	GKGCMC	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	330
BceAI	ACGGC	1 cut(s)	70
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BcoDI	GTCTC	1 cut(s)	18
BisI	GCNGC	2 cut(s)	72, 344
BlsI	GCNGC	2 cut(s)	73, 345
Bme18I	GGWCC	2 cut(s)	15, 60
BmgT120I	GGNCC	3 cut(s)	15, 60, 281
BmiI	GGNNCC	3 cut(s)	62, 194, 217
BmsI	GCATC	1 cut(s)	308
Bpu10I	CCTNAGC	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	219
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse118I	RCCGGY	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	25
BseSI	GKGCMC	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	330
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	2 cut(s)	35, 282
BshTI	ACCGGT	1 cut(s)	182
BsiEI	CGRYCG	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	2 cut(s)	18, 183
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	35, 282
Bso31I	GGTCTC	1 cut(s)	18
Bsp1286I	GDGCHC	2 cut(s)	228, 240
Bsp143I	GATC	1 cut(s)	154
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	4 cut(s)	72, 83, 164, 178
BspANI	GGCC	2 cut(s)	35, 282
BspCNI	CTCAG	1 cut(s)	24
BspLI	GGNNCC	3 cut(s)	62, 194, 217
BspTNI	GGTCTC	1 cut(s)	18
BsrFI	RCCGGY	1 cut(s)	182
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	1 cut(s)	154
BssT1I	CCWWGG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	386
BstDEI	CTNAG	1 cut(s)	11
BstDSI	CCRYGG	1 cut(s)	219
BstKTI	GATC	1 cut(s)	157
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	1 cut(s)	154
BstMCI	CGRYCG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	330
BsuRI	GGCC	2 cut(s)	35, 282
BtgI	CCRYGG	1 cut(s)	219
BtgZI	GCGATG	1 cut(s)	52
BtsI	GCAGTG	1 cut(s)	370
BtsIMutI	CAGTG	1 cut(s)	370
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	3 cut(s)	15, 60, 281
CspAI	ACCGGT	1 cut(s)	182
CspCI	CAANNNNNGTGG	2 cut(s)	310, 345
CviAII	CATG	3 cut(s)	76, 220, 229
CviJI	RGCY	8 cut(s)	35, 48, 226, 233, 282, 290, 343, 393
CviKI_1	RGCY	8 cut(s)	35, 48, 226, 233, 282, 290, 343, 393
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
EciI	GGCGGA	2 cut(s)	72, 179
Ecl136II	GAGCTC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	18
Eco47I	GGWCC	2 cut(s)	15, 60
Eco53kI	GAGCTC	1 cut(s)	226
EcoICRI	GAGCTC	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	3 cut(s)	79, 223, 232
FaiI	YATR	6 cut(s)	77, 221, 230, 272, 311, 372
FatI	CATG	3 cut(s)	75, 219, 228
Fnu4HI	GCNGC	2 cut(s)	72, 344
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	2 cut(s)	72, 344
GluI	GCNGC	2 cut(s)	72, 344
HaeIII	GGCC	2 cut(s)	35, 282
HapII	CCGG	2 cut(s)	18, 183
Hin1II	CATG	3 cut(s)	79, 223, 232
HinfI	GANTC	1 cut(s)	336
HpaII	CCGG	2 cut(s)	18, 183
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	2 cut(s)	60, 368
Hpy188I	TCNGA	4 cut(s)	54, 108, 148, 317
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	2 cut(s)	60, 368
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4V	TGCA	2 cut(s)	321, 363
HpyF3I	CTNAG	1 cut(s)	11
Hsp92II	CATG	3 cut(s)	79, 223, 232
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	4 cut(s)	31, 125, 196, 312
Lsp1109I	GCAGC	1 cut(s)	330
LweI	GCATC	1 cut(s)	308
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	1 cut(s)	259
MhlI	GDGCHC	2 cut(s)	228, 240
MluCI	AATT	2 cut(s)	149, 396
MlyI	GAGTC	1 cut(s)	345
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	6 cut(s)	46, 48, 90, 154, 237, 260
MslI	CAYNNNNRTG	1 cut(s)	233
MspI	CCGG	2 cut(s)	18, 183
Mva1269I	GAATGC	1 cut(s)	12
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	3 cut(s)	79, 223, 232
NlaIV	GGNNCC	3 cut(s)	62, 194, 217
PctI	GAATGC	1 cut(s)	12
PinAI	ACCGGT	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	73, 345
Ple19I	CGATCG	1 cut(s)	157
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
PsiI	TTATAA	1 cut(s)	311
Psp124BI	GAGCTC	1 cut(s)	228
PspN4I	GGNNCC	3 cut(s)	62, 194, 217
PspPI	GGNCC	3 cut(s)	15, 60, 281
PvuI	CGATCG	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	233
SacI	GAGCTC	1 cut(s)	228
SatI	GCNGC	2 cut(s)	72, 344
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	3 cut(s)	15, 60, 281
SchI	GAGTC	1 cut(s)	345
SduI	GDGCHC	2 cut(s)	228, 240
SetI	ASST	6 cut(s)	17, 59, 209, 228, 301, 345
SfaNI	GCATC	1 cut(s)	308
SinI	GGWCC	2 cut(s)	15, 60
SmiMI	CAYNNNNRTG	1 cut(s)	233
Sse9I	AATT	2 cut(s)	149, 396
SsiI	CCGC	4 cut(s)	72, 83, 164, 178
SstI	GAGCTC	1 cut(s)	228
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	386
TaqI	TCGA	2 cut(s)	153, 334
TasI	AATT	2 cut(s)	149, 396
TauI	GCSGC	1 cut(s)	74
TscAI	CASTG	1 cut(s)	370
TseI	GCWGC	1 cut(s)	343
TspRI	CASTG	1 cut(s)	370
VpaK11BI	GGWCC	2 cut(s)	15, 60
XapI	RAATTY	1 cut(s)	149
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.