Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0014905

Physical Location & Seq

Genomic Coordinates Reverse (-)

12233032 .. 12235425

Gene Structure 2394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG146100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGATGTTCTCCGCCAAAGAAATGCCTTCTCCTTCATCATTGTTCTCTGCTTATGCGTCCATGGCAGCCTCAATGATGCTATTTAGATCCATGGCCAATGAGCTAGTACCTCAGCCAGTTAGAGGCTACCTTTACTCAACTCTCCGCTACATCTTCAAAACTCACTCCACTATGCTCACACTAGTCATCGAGGAATCGAATAGCATAAGCCGAAACCAACTCTATGATGCTGCAGAGGTTTACTTGTGCACGAGGATCAGTCCCAAGACTGACAGGCTCAAAATCAGCAAAACCCCGAAAGCTAATAACTTAACAATTCGGCTCGAGAAAGGTGAGAAGTTGGTGGATTTCTATGAAGGGATTGAGCTCCAGTGGAAGTTTGTTTGTGCCGAGTCTGGACAGAACAATCCCAATGATCCATTTTCGCCTCCAAGGTCCGAAAAGAGGTTCTTTGAGCTCAAGTTCCACAAGAAGCACAGGGACAAAATCTTGGATTTTTATGTGCCTTATGTTGTTGAAAGGGCCAAAGCAATCAAAGATGAAGAAAGGGTTTTGAAGATGTACACATTAAACAGTTCCGGCCACCACCACCCTTACAATGGCTTCAAGTGGGACTCCATCAACCTCGAACACCCTTCAACATTTGAGACTCTGGCCATGGATTTGGAGCTCAAGAATGCTGTTATTGAAGATCTTAACAGGTTTGTGAGGAGGAAGGACTTCTATAAGAAAGTAGGGAGGGCATGGAAAAGAGGGTACTTGTTGTATGGTCCTCCAGGCACTGGAAAATCAAGCTTGGTTGCAGCCATGGCTAACCATCTCAAGTTCGATGTCTATGACTTGCAGCTTGCTAATATATTTCGTGATTCTGACCTGAGAAAACTGTTGCTGGCCACCGCAAATCGGTCCATTCTTGTGATTGAAGACATTGATTGTAGTGTTGATTTGCCTGATCGGGTTCGACATGGAGATGGAAGAAAGCAAGTGCCTGATGTACAGTTAACACTATCTGGACTACTGAACTTCATAGATGGATTATGGTCTAGTTGTGGAGATGAGAGGATCATTATATTTACCACTAATCACAAGGAGAGGTTAGACCCTGCTCTATTGCGCCCTGGACGCATGGACATGCATATTCACATGTCCTACTGCACATACCATGGCTTCCAACTCTTGGCCTCAAACTACTTGGGTATCCAGAACCACCACTACCTCTATGATGAAATCGAAGGCTTACTGAAAGAAACAGAGGTGACTCCTGCGCAAGTAGCAGAAGAGTTGATGAAGAGTGAAGAAGTTGATATTGCACTTGAAGGACTGATCAAGCTTTTAAAGCGGAAGAAGATGGAAGGAGATGAATGCGAGGTTGAGAATGAAAAGAATATCGGAGCGAAAGGAGCAAAGAGGCAGAAAACTGAGAACAAACAGAAGAAACCTGTGAGGAATAGTAGGAAAAACACCACCAAAAGATGCAGCAACCGTTTATCAGCTAAAGCCAACTATTATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

504

Amino Acids

58.09

Weight (kDa)

9.08

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	36 - 129	1.2e-23	Domain associated at C-terminal with AAA
AAA	PF00004	253 - 383	4.2e-20	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	385 - 451	1.4e-22	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17760 AT5G17760
fragaria_vesca	FvH4_1g12741
malus_domestica	MD02G1141700.v1.1 MD15G1254600.v1.1
prunus_persica	Prupe.7G159000_v2.0.a1
pyrus_communis	pycom02g11170 pycom15g22370
rosa_chinensis	RchiOBHm_Chr2g0100821
rosa_laevigata	RLG00000017014
rosa_multiflora	Rmu_sc0001659.1_g000021
rosa_roxburghii	Rroxscaffold_2G00141830
rosa_rugosa	Rorug02G0093100
rosa_samantha	Rh2CG146700 Rh2DG146100
rosa_wichuraiana	Rw2G011010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1266
AccB7I	CCANNNNNTGG	2 cut(s)	782, 1177
AciI	CCGC	4 cut(s)	12, 145, 897, 1339
AclWI	GGATC	4 cut(s)	81, 263, 410, 1070
AcoI	YGGCCR	4 cut(s)	93, 580, 654, 891
AfaI	GTAC	4 cut(s)	108, 563, 758, 996
AfiI	CCNNNNNNNGG	6 cut(s)	122, 444, 599, 782, 903, 1177
AflIII	ACRYGT	1 cut(s)	1143
AgsI	TTSAA	8 cut(s)	157, 518, 556, 607, 639, 689, 923, 1316
AhlI	ACTAGT	1 cut(s)	181
AjnI	CCWGG	2 cut(s)	775, 1117
AluBI	AGCT	9 cut(s)	103, 302, 367, 457, 670, 795, 847, 1330, 1493
AluI	AGCT	9 cut(s)	103, 302, 367, 457, 670, 795, 847, 1330, 1493
Alw21I	GWGCWC	4 cut(s)	251, 369, 459, 672
Alw26I	GTCTC	1 cut(s)	641
Alw44I	GTGCAC	1 cut(s)	247
AlwI	GGATC	4 cut(s)	81, 263, 410, 1070
AlwNI	CAGNNNCTG	1 cut(s)	782
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	6 cut(s)	93, 522, 580, 654, 891, 1179
ApaLI	GTGCAC	1 cut(s)	247
ApeKI	GCWGC	5 cut(s)	65, 230, 803, 844, 1476
Asp700I	GAANNNNTTC	1 cut(s)	719
AspLEI	GCGC	2 cut(s)	1116, 1267
AspS9I	GGNCC	4 cut(s)	435, 522, 770, 906
AsuHPI	GGTGA	2 cut(s)	344, 1267
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	3 cut(s)	435, 770, 906
BaeGI	GKGCMC	1 cut(s)	251
BaeI	ACNNNNGTAYC	2 cut(s)	1180, 1213
BalI	TGGCCA	3 cut(s)	95, 656, 893
BanII	GRGCYC	3 cut(s)	369, 459, 672
BauI	CACGAG	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	930
Bbv12I	GWGCWC	4 cut(s)	251, 369, 459, 672
BbvCI	CCTCAGC	1 cut(s)	111
BbvI	GCAGC	5 cut(s)	77, 217, 815, 856, 1488
BccI	CCATC	5 cut(s)	626, 825, 965, 1025, 1342
BciT130I	CCWGG	2 cut(s)	777, 1119
BciVI	GTATCC	1 cut(s)	1208
BclI	TGATCA	1 cut(s)	1323
BcoDI	GTCTC	1 cut(s)	641
BcuI	ACTAGT	1 cut(s)	181
BfaI	CTAG	3 cut(s)	104, 182, 1044
BfmI	CTRYAG	1 cut(s)	231
BfuI	GTATCC	1 cut(s)	1208
BglII	AGATCT	1 cut(s)	691
BisI	GCNGC	5 cut(s)	66, 231, 804, 845, 1477
BlsI	GCNGC	5 cut(s)	67, 232, 805, 846, 1478
Bme1390I	CCNGG	2 cut(s)	777, 1119
Bme18I	GGWCC	3 cut(s)	435, 770, 906
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	4 cut(s)	435, 522, 770, 906
BmrFI	CCNGG	2 cut(s)	777, 1119
BmsI	GCATC	3 cut(s)	66, 217, 1463
BpiI	GAAGAC	1 cut(s)	930
BpmI	CTGGAG	2 cut(s)	353, 759
Bpu10I	CCTNAGC	1 cut(s)	111
BpuEI	CTTGAG	3 cut(s)	443, 656, 806
BsaJI	CCNNGG	7 cut(s)	60, 90, 431, 657, 807, 1117, 1162
Bsc4I	CCNNNNNNNGG	6 cut(s)	122, 444, 599, 782, 903, 1177
Bse1I	ACTGG	3 cut(s)	116, 370, 787
BseBI	CCWGG	2 cut(s)	777, 1119
BseDI	CCNNGG	7 cut(s)	60, 90, 431, 657, 807, 1117, 1162
BseLI	CCNNNNNNNGG	6 cut(s)	122, 444, 599, 782, 903, 1177
BseMII	CTCAG	3 cut(s)	125, 866, 1410
BseNI	ACTGG	3 cut(s)	116, 370, 787
BseRI	GAGGAG	1 cut(s)	724
BseSI	GKGCMC	1 cut(s)	251
BseXI	GCAGC	5 cut(s)	77, 217, 815, 856, 1488
BsgI	GTGCAG	1 cut(s)	1138
BshFI	GGCC	6 cut(s)	95, 524, 582, 656, 893, 1181
BsiHKAI	GWGCWC	4 cut(s)	251, 369, 459, 672
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	579
BslFI	GGGAC	3 cut(s)	246, 494, 626
BslI	CCNNNNNNNGG	6 cut(s)	122, 444, 599, 782, 903, 1177
BsmAI	GTCTC	1 cut(s)	641
BsmFI	GGGAC	3 cut(s)	246, 494, 626
BsmI	GAATGC	2 cut(s)	682, 1367
BsnI	GGCC	6 cut(s)	95, 524, 582, 656, 893, 1181
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	4 cut(s)	251, 369, 459, 672
Bsp1407I	TGTACA	2 cut(s)	561, 994
Bsp143I	GATC	7 cut(s)	86, 255, 415, 691, 952, 1062, 1323
Bsp19I	CCATGG	5 cut(s)	60, 90, 657, 807, 1162
BspACI	CCGC	4 cut(s)	12, 145, 897, 1339
BspANI	GGCC	6 cut(s)	95, 524, 582, 656, 893, 1181
BspCNI	CTCAG	3 cut(s)	124, 867, 1411
BspMAI	CTGCAG	1 cut(s)	235
BspPI	GGATC	4 cut(s)	81, 263, 410, 1070
BsrGI	TGTACA	2 cut(s)	561, 994
BsrI	ACTGG	3 cut(s)	116, 370, 787
BssECI	CCNNGG	7 cut(s)	60, 90, 431, 657, 807, 1117, 1162
BssMI	GATC	7 cut(s)	86, 255, 415, 691, 952, 1062, 1323
BssSI	CACGAG	1 cut(s)	250
BssT1I	CCWWGG	6 cut(s)	60, 90, 431, 657, 807, 1162
Bst2BI	CACGAG	1 cut(s)	250
Bst2UI	CCWGG	2 cut(s)	777, 1119
Bst4CI	ACNGT	4 cut(s)	575, 885, 999, 1484
Bst6I	CTCTTC	2 cut(s)	1272, 1283
BstAUI	TGTACA	2 cut(s)	561, 994
BstC8I	GCNNGC	2 cut(s)	849, 891
BstDEI	CTNAG	3 cut(s)	111, 875, 1419
BstDSI	CCRYGG	5 cut(s)	60, 90, 657, 807, 1162
BstHHI	GCGC	2 cut(s)	1116, 1267
BstKTI	GATC	7 cut(s)	89, 258, 418, 694, 955, 1065, 1326
BstMAI	GTCTC	1 cut(s)	641
BstMBI	GATC	7 cut(s)	86, 255, 415, 691, 952, 1062, 1323
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 809, 1122, 1271, 1336, 1400
BstNI	CCWGG	2 cut(s)	777, 1119
BstNSI	RCATGY	2 cut(s)	1135, 1147
BstSCI	CCNGG	2 cut(s)	775, 1117
BstSFI	CTRYAG	1 cut(s)	231
BstSLI	GKGCMC	1 cut(s)	251
BstV1I	GCAGC	5 cut(s)	77, 217, 815, 856, 1488
BstV2I	GAAGAC	1 cut(s)	930
BstX2I	RGATCY	2 cut(s)	86, 691
BstXI	CCANNNNNNTGG	1 cut(s)	664
BstYI	RGATCY	2 cut(s)	86, 691
BsuI	GTATCC	1 cut(s)	1208
BsuRI	GGCC	6 cut(s)	95, 524, 582, 656, 893, 1181
BtgI	CCRYGG	5 cut(s)	60, 90, 657, 807, 1162
BtsIMutI	CAGTG	2 cut(s)	377, 780
Cac8I	GCNNGC	2 cut(s)	849, 891
CaiI	CAGNNNCTG	1 cut(s)	782
CfoI	GCGC	2 cut(s)	1116, 1267
Cfr13I	GGNCC	4 cut(s)	435, 522, 770, 906
CseI	GACGC	2 cut(s)	45, 1131
Csp6I	GTAC	4 cut(s)	107, 562, 757, 995
CviQI	GTAC	4 cut(s)	107, 562, 757, 995
DdeI	CTNAG	3 cut(s)	111, 875, 1419
DpnI	GATC	7 cut(s)	88, 257, 417, 693, 954, 1064, 1325
DpnII	GATC	7 cut(s)	86, 255, 415, 691, 952, 1062, 1323
DraI	TTTAAA	1 cut(s)	1335
EaeI	YGGCCR	4 cut(s)	93, 580, 654, 891
Eam1104I	CTCTTC	2 cut(s)	1272, 1283
EarI	CTCTTC	2 cut(s)	1272, 1283
Ecl136II	GAGCTC	3 cut(s)	367, 457, 670
Eco130I	CCWWGG	6 cut(s)	60, 90, 431, 657, 807, 1162
Eco24I	GRGCYC	3 cut(s)	369, 459, 672
Eco47I	GGWCC	3 cut(s)	435, 770, 906
Eco53kI	GAGCTC	3 cut(s)	367, 457, 670
Eco88I	CYCGRG	1 cut(s)	323
EcoICRI	GAGCTC	3 cut(s)	367, 457, 670
EcoRII	CCWGG	2 cut(s)	775, 1117
EcoT14I	CCWWGG	6 cut(s)	60, 90, 431, 657, 807, 1162
EcoT22I	ATGCAT	2 cut(s)	1137, 1513
EcoT38I	GRGCYC	3 cut(s)	369, 459, 672
ErhI	CCWWGG	6 cut(s)	60, 90, 431, 657, 807, 1162
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FaqI	GGGAC	3 cut(s)	246, 494, 626
FbaI	TGATCA	1 cut(s)	1323
Fnu4HI	GCNGC	5 cut(s)	66, 231, 804, 845, 1477
FriOI	GRGCYC	3 cut(s)	369, 459, 672
Fsp4HI	GCNGC	5 cut(s)	66, 231, 804, 845, 1477
FspBI	CTAG	3 cut(s)	104, 182, 1044
FspI	TGCGCA	1 cut(s)	1266
GlaI	GCGC	2 cut(s)	1115, 1266
GluI	GCNGC	5 cut(s)	66, 231, 804, 845, 1477
GsuI	CTGGAG	2 cut(s)	353, 759
HaeIII	GGCC	6 cut(s)	95, 524, 582, 656, 893, 1181
HapII	CCGG	1 cut(s)	579
HgaI	GACGC	2 cut(s)	45, 1131
HhaI	GCGC	2 cut(s)	1116, 1267
Hin6I	GCGC	2 cut(s)	1114, 1265
HinP1I	GCGC	2 cut(s)	1114, 1265
HincII	GTYRAC	1 cut(s)	1002
HindII	GTYRAC	1 cut(s)	1002
HindIII	AAGCTT	2 cut(s)	793, 1328
HinfI	GANTC	6 cut(s)	194, 392, 614, 649, 866, 1258
HpaI	GTTAAC	1 cut(s)	1002
HpaII	CCGG	1 cut(s)	579
HphI	GGTGA	2 cut(s)	344, 1267
Hpy166II	GTNNAC	4 cut(s)	241, 249, 564, 1002
Hpy188I	TCNGA	3 cut(s)	439, 871, 1391
Hpy188III	TCNNGA	6 cut(s)	325, 396, 673, 863, 1011, 1201
Hpy8I	GTNNAC	4 cut(s)	241, 249, 564, 1002
HpyAV	CCTTC	8 cut(s)	36, 42, 350, 645, 709, 1226, 1310, 1346
HpyCH4III	ACNGT	4 cut(s)	575, 885, 999, 1484
HpyCH4V	TGCA	9 cut(s)	233, 249, 803, 844, 1135, 1155, 1310, 1476, 1511
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 809, 1122, 1271, 1336, 1400
HpyF3I	CTNAG	3 cut(s)	111, 875, 1419
HspAI	GCGC	2 cut(s)	1114, 1265
Ksp22I	TGATCA	1 cut(s)	1323
KspAI	GTTAAC	1 cut(s)	1002
Kzo9I	GATC	7 cut(s)	86, 255, 415, 691, 952, 1062, 1323
LmnI	GCTCC	4 cut(s)	372, 667, 1391, 1400
Lsp1109I	GCAGC	5 cut(s)	77, 217, 815, 856, 1488
LweI	GCATC	3 cut(s)	66, 217, 1463
MaeI	CTAG	3 cut(s)	104, 182, 1044
MaeIII	GTNAC	1 cut(s)	1255
MalI	GATC	7 cut(s)	88, 257, 417, 693, 954, 1064, 1325
MboI	GATC	7 cut(s)	86, 255, 415, 691, 952, 1062, 1323
MflI	RGATCY	2 cut(s)	86, 691
MhlI	GDGCHC	4 cut(s)	251, 369, 459, 672
MlsI	TGGCCA	3 cut(s)	95, 656, 893
MluCI	AATT	1 cut(s)	315
MluNI	TGGCCA	3 cut(s)	95, 656, 893
MlyI	GAGTC	4 cut(s)	401, 608, 643, 1252
MmeI	TCCRAC	1 cut(s)	1195
Mox20I	TGGCCA	3 cut(s)	95, 656, 893
Mph1103I	ATGCAT	2 cut(s)	1137, 1513
MroXI	GAANNNNTTC	1 cut(s)	719
MscI	TGGCCA	3 cut(s)	95, 656, 893
MseI	TTAA	5 cut(s)	311, 569, 696, 1001, 1334
MslI	CAYNNNNRTG	3 cut(s)	914, 969, 1130
Msp20I	TGGCCA	3 cut(s)	95, 656, 893
MspI	CCGG	1 cut(s)	579
MspR9I	CCNGG	2 cut(s)	777, 1119
Mva1269I	GAATGC	2 cut(s)	682, 1367
MvaI	CCWGG	2 cut(s)	777, 1119
MwoI	GCNNNNNNNGC	6 cut(s)	62, 809, 1122, 1271, 1336, 1400
NcoI	CCATGG	5 cut(s)	60, 90, 657, 807, 1162
NdeII	GATC	7 cut(s)	86, 255, 415, 691, 952, 1062, 1323
NmeAIII	GCCGAG	1 cut(s)	415
NmuCI	GTSAC	1 cut(s)	1255
NsbI	TGCGCA	1 cut(s)	1266
NsiI	ATGCAT	2 cut(s)	1137, 1513
NspI	RCATGY	2 cut(s)	1135, 1147
PaeR7I	CTCGAG	1 cut(s)	323
PciI	ACATGT	1 cut(s)	1143
PctI	GAATGC	2 cut(s)	682, 1367
PdmI	GAANNNNTTC	1 cut(s)	719
PfeI	GAWTC	2 cut(s)	194, 866
PflMI	CCANNNNNTGG	2 cut(s)	782, 1177
PkrI	GCNGC	5 cut(s)	67, 232, 805, 846, 1478
PleI	GAGTC	4 cut(s)	400, 608, 643, 1252
PpsI	GAGTC	4 cut(s)	400, 608, 643, 1252
PscI	ACATGT	1 cut(s)	1143
Psp124BI	GAGCTC	3 cut(s)	369, 459, 672
Psp6I	CCWGG	2 cut(s)	775, 1117
PspGI	CCWGG	2 cut(s)	775, 1117
PspPI	GGNCC	4 cut(s)	435, 522, 770, 906
PsrI	GAACNNNNNNTAC	2 cut(s)	1196, 1228
PstI	CTGCAG	1 cut(s)	235
PstNI	CAGNNNCTG	1 cut(s)	782
PsuI	RGATCY	2 cut(s)	86, 691
RsaI	GTAC	4 cut(s)	108, 563, 758, 996
RsaNI	GTAC	4 cut(s)	107, 562, 757, 995
RseI	CAYNNNNRTG	3 cut(s)	914, 969, 1130
SacI	GAGCTC	3 cut(s)	369, 459, 672
SaqAI	TTAA	5 cut(s)	311, 569, 696, 1001, 1334
SatI	GCNGC	5 cut(s)	66, 231, 804, 845, 1477
Sau3AI	GATC	7 cut(s)	86, 255, 415, 691, 952, 1062, 1323
Sau96I	GGNCC	4 cut(s)	435, 522, 770, 906
SchI	GAGTC	4 cut(s)	401, 608, 643, 1252
ScrFI	CCNGG	2 cut(s)	777, 1119
SduI	GDGCHC	4 cut(s)	251, 369, 459, 672
SfaNI	GCATC	3 cut(s)	66, 217, 1463
SfcI	CTRYAG	1 cut(s)	231
Sfr274I	CTCGAG	1 cut(s)	323
SinI	GGWCC	3 cut(s)	435, 770, 906
SlaI	CTCGAG	1 cut(s)	323
SmiMI	CAYNNNNRTG	3 cut(s)	914, 969, 1130
SmlI	CTYRAG	4 cut(s)	323, 458, 671, 821
SmoI	CTYRAG	4 cut(s)	323, 458, 671, 821
SpeI	ACTAGT	1 cut(s)	181
Sse9I	AATT	1 cut(s)	315
SsiI	CCGC	4 cut(s)	12, 145, 897, 1339
SspMI	CTAG	3 cut(s)	104, 182, 1044
SstI	GAGCTC	3 cut(s)	369, 459, 672
StyD4I	CCNGG	2 cut(s)	775, 1117
StyI	CCWWGG	6 cut(s)	60, 90, 431, 657, 807, 1162
TaaI	ACNGT	4 cut(s)	575, 885, 999, 1484
TaqI	TCGA	7 cut(s)	189, 197, 324, 627, 828, 961, 1230
TaqII	GACCGA	1 cut(s)	894
TasI	AATT	1 cut(s)	315
TatI	WGTACW	2 cut(s)	561, 994
TfiI	GAWTC	2 cut(s)	194, 866
Tru1I	TTAA	5 cut(s)	311, 569, 696, 1001, 1334
Tru9I	TTAA	5 cut(s)	311, 569, 696, 1001, 1334
TscAI	CASTG	2 cut(s)	377, 787
TseFI	GTSAC	1 cut(s)	1255
TseI	GCWGC	5 cut(s)	65, 230, 803, 844, 1476
Tsp45I	GTSAC	1 cut(s)	1255
TspDTI	ATGAA	8 cut(s)	24, 369, 555, 1015, 1239, 1301, 1374, 1392
TspRI	CASTG	2 cut(s)	377, 787
Van91I	CCANNNNNTGG	2 cut(s)	782, 1177
VneI	GTGCAC	1 cut(s)	247
VpaK11BI	GGWCC	3 cut(s)	435, 770, 906
XceI	RCATGY	2 cut(s)	1135, 1147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	596
XhoI	CTCGAG	1 cut(s)	323
XmnI	GAANNNNTTC	1 cut(s)	719
XspI	CTAG	3 cut(s)	104, 182, 1044
Zsp2I	ATGCAT	2 cut(s)	1137, 1513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.