FvH4_1g13490

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013590
Physical Location & Seq
Reverse (-)
7407928 .. 7410194
2267 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13490.t1

Sequence Viewer

Length: 1098 bp
ATGAGCGCAATGGACCGAGCAAGGAGGGCAAAAGAGTTGGTAGCGAACAAGAACAGCATGATATACCTGGACCTGAAGGATATAATCAAGGATCATGCTCTCCCGTTCCTGCCTGCCAAATCACTTTTCAGGTTCAATGGGGTTTGCAAGGACTGGAAGGTCCAGATCAGATCTCCTTTTTTTGCCCACAAGCAGTCAACTAGCTTTTCGGATATCTCGGGATTCTTTCTTGTTTCCTCACCATCAACCGTACCTTCGTTTGTCTCTCTTGATTCCACGGCCTATGGTGTTCCAGACCCGTCTCTGAAGTTTTTACCTGAGCCAGTTGACATAAGGGCTTCTTCCAATGGACTGCTTTGTTGTCAGGGACGTGAAGGCTATAAGGCTTACTACATCTGCAATCCTGTTACTAAGCAGTGGAAAAAGCTTCCTAAACCAATTGCTGACCACGGAAGAGACCCTGCTCTGGTTCTCATCTTTGAGCCATCTTTGCTCAGTTTTGTGGCCGAGTACAAGCTGGTCTGTGTTTTCCCATCAGTCGACTTTGAGAAAGGACATGAATTTGAGATCTATTCCTCCAAGGAGGGGTCTTGGAGAATTTCTGGTGAGATTTACTATGGCAGTGGATCTGTTTCGCCAAGATCCGGTGTTTATGCGAATGACGTAGTCTATTGGCACACATCGCTTGGTAGGATCCTTGCTTTTGACCTGAAGATGGAGAGGGCACAACTCCTTTATAGCCATGGTTACTTTGATTCGGTCATGGGTGAGATGGATGGAAAGCTTTGTTCGACTAGGGCTCATGGTAATGCAGTAACCGTAAGTGTGTTGTCTAATGCTTACACAAACACAATGCAGATGCACAGCTCGGTCAAGGCATGGGCACAAAAGCTTTCAGTTAATCTTAACCCTGCACCAGTACCTTCAGCGCCCGGTTCTAGGGGTAGTTTATTGCATGCAAGTGGGAATCTGGTGTTGTACCGGAATGGGACAAAACTCTATGCATACAACCTGCGGACTAAAGAAACAATATATATGTGTGATGGGTCTTACCAAGGGATATTTTTTCCTCATGTCAACAGCCTCGTGGAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

366

Amino Acids

40.64

Weight (kDa)

8.97

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 109 - 262 8.4e-09 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 112 - 302 1.4e-13 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 114 - 244 3.3e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013590)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13490
malus_domestica MD02G1150300.v1.1 MD15G1264700.v1.1 MD15G1264800.v1.1
prunus_persica Prupe.7G152800_v2.0.a1
pyrus_communis pycom02g11810 pycom15g23050 pycom15g23060
rosa_chinensis RchiOBHm_Chr2g0101881
rosa_laevigata RLG00000017107
rosa_multiflora Rmu_sc0008071.1_g000001
rosa_roxburghii Rroxscaffold_2G00140970
rosa_rugosa Rorug02G0102800
rosa_samantha Rh2AG150100 Rh2BG155700 Rh2CG156000 Rh2DG155800
rosa_wichuraiana Rw2G011750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
Acc36I ACCTGC 1 cut(s) 1020
AccI GTMKAC 1 cut(s) 540
AciI CCGC 1 cut(s) 1015
AclWI GGATC 5 cut(s) 99, 634, 636, 688, 701
AcoI YGGCCR 1 cut(s) 504
AcsI RAATTY 2 cut(s) 560, 597
AcuI CTGAAG 4 cut(s) 95, 326, 731, 909
AfaI GTAC 4 cut(s) 252, 512, 921, 980
AfiI CCNNNNNNNGG 5 cut(s) 466, 585, 644, 715, 939
AgsI TTSAA 1 cut(s) 136
AjiI CACGTC 1 cut(s) 371
AjnI CCWGG 1 cut(s) 66
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
AluBI AGCT 7 cut(s) 204, 427, 517, 784, 867, 892, 1093
AluI AGCT 7 cut(s) 204, 427, 517, 784, 867, 892, 1093
Alw21I GWGCWC 1 cut(s) 1095
Alw26I GTCTC 3 cut(s) 268, 306, 450
AlwI GGATC 5 cut(s) 99, 634, 636, 688, 701
Ama87I CYCGRG 1 cut(s) 217
AoxI GGCC 2 cut(s) 279, 504
ApoI RAATTY 2 cut(s) 560, 597
AspLEI GCGC 2 cut(s) 8, 931
AspS9I GGNCC 3 cut(s) 13, 70, 160
AsuC2I CCSGG 1 cut(s) 933
AsuHPI GGTGA 3 cut(s) 231, 617, 779
AvaI CYCGRG 1 cut(s) 217
AvaII GGWCC 3 cut(s) 13, 70, 160
BaeGI GKGCMC 2 cut(s) 727, 886
BamHI GGATCC 1 cut(s) 693
BanII GRGCYC 2 cut(s) 802, 1095
BauI CACGAG 1 cut(s) 1085
Bbv12I GWGCWC 1 cut(s) 1095
BccI CCATC 7 cut(s) 250, 493, 541, 709, 766, 770, 1037
BceAI ACGGC 1 cut(s) 294
BciT130I CCWGG 1 cut(s) 68
BcnI CCSGG 1 cut(s) 933
BcoDI GTCTC 3 cut(s) 268, 306, 450
BfaI CTAG 4 cut(s) 201, 795, 939, 1096
BfoI RGCGCY 1 cut(s) 932
BfuAI ACCTGC 1 cut(s) 1020
BglII AGATCT 2 cut(s) 170, 567
Bme1390I CCNGG 2 cut(s) 68, 933
Bme18I GGWCC 3 cut(s) 13, 70, 160
BmeT110I CYCGRG 1 cut(s) 217
BmgBI CACGTC 1 cut(s) 371
BmgT120I GGNCC 3 cut(s) 13, 70, 160
BmiI GGNNCC 1 cut(s) 695
BmrFI CCNGG 2 cut(s) 68, 933
BmsI GCATC 1 cut(s) 849
Bpu10I CCTNAGC 1 cut(s) 318
BpuMI CCSGG 1 cut(s) 933
BsaI GGTCTC 1 cut(s) 450
BsaJI CCNNGG 5 cut(s) 276, 448, 579, 742, 1054
BsaWI WCCGGW 2 cut(s) 644, 981
Bsc4I CCNNNNNNNGG 5 cut(s) 466, 585, 644, 715, 939
Bse1I ACTGG 3 cut(s) 158, 323, 917
Bse3DI GCAATG 1 cut(s) 15
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 5 cut(s) 276, 448, 579, 742, 1054
BseGI GGATG 1 cut(s) 781
BseLI CCNNNNNNNGG 5 cut(s) 466, 585, 644, 715, 939
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 2 cut(s) 309, 508
BseNI ACTGG 3 cut(s) 158, 323, 917
BseSI GKGCMC 2 cut(s) 727, 886
BsgI GTGCAG 1 cut(s) 897
BshFI GGCC 2 cut(s) 281, 506
BsiHKAI GWGCWC 1 cut(s) 1095
BsiHKCI CYCGRG 1 cut(s) 217
BsiSI CCGG 3 cut(s) 645, 933, 982
BslFI GGGAC 2 cut(s) 381, 1003
BslI CCNNNNNNNGG 5 cut(s) 466, 585, 644, 715, 939
BsmAI GTCTC 3 cut(s) 268, 306, 450
BsmBI CGTCTC 1 cut(s) 306
BsmFI GGGAC 2 cut(s) 381, 1003
BsnI GGCC 2 cut(s) 281, 506
Bso31I GGTCTC 1 cut(s) 450
BsoBI CYCGRG 1 cut(s) 217
Bsp1286I GDGCHC 4 cut(s) 727, 802, 886, 1095
Bsp143I GATC 7 cut(s) 91, 165, 170, 567, 626, 641, 693
Bsp19I CCATGG 1 cut(s) 742
BspACI CCGC 1 cut(s) 1015
BspANI GGCC 2 cut(s) 281, 506
BspCNI CTCAG 2 cut(s) 310, 507
BspLI GGNNCC 1 cut(s) 695
BspMI ACCTGC 1 cut(s) 1020
BspPI GGATC 5 cut(s) 99, 634, 636, 688, 701
BspTNI GGTCTC 1 cut(s) 450
BsrDI GCAATG 1 cut(s) 15
BsrI ACTGG 3 cut(s) 158, 323, 917
BssECI CCNNGG 5 cut(s) 276, 448, 579, 742, 1054
BssMI GATC 7 cut(s) 91, 165, 170, 567, 626, 641, 693
BssSI CACGAG 1 cut(s) 1085
BssT1I CCWWGG 3 cut(s) 579, 742, 1054
Bst2BI CACGAG 1 cut(s) 1085
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 2 cut(s) 250, 820
Bst6I CTCTTC 1 cut(s) 448
BstC8I GCNNGC 2 cut(s) 114, 957
BstDEI CTNAG 3 cut(s) 318, 411, 494
BstDSI CCRYGG 3 cut(s) 276, 448, 742
BstF5I GGATG 1 cut(s) 781
BstH2I RGCGCY 1 cut(s) 932
BstHHI GCGC 2 cut(s) 8, 931
BstKTI GATC 7 cut(s) 94, 168, 173, 570, 629, 644, 696
BstMAI GTCTC 3 cut(s) 268, 306, 450
BstMBI GATC 7 cut(s) 91, 165, 170, 567, 626, 641, 693
BstMWI GCNNNNNNNGC 3 cut(s) 26, 490, 682
BstNI CCWGG 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 959
BstSCI CCNGG 2 cut(s) 66, 931
BstSLI GKGCMC 2 cut(s) 727, 886
BstX2I RGATCY 5 cut(s) 170, 567, 626, 641, 693
BstYI RGATCY 5 cut(s) 170, 567, 626, 641, 693
BsuRI GGCC 2 cut(s) 281, 506
BtgI CCRYGG 3 cut(s) 276, 448, 742
BtgZI GCGATG 1 cut(s) 666
BtrI CACGTC 1 cut(s) 371
BtsCI GGATG 1 cut(s) 781
BtsI GCAGTG 2 cut(s) 422, 628
BtsIMutI CAGTG 2 cut(s) 422, 628
BveI ACCTGC 1 cut(s) 1020
Cac8I GCNNGC 2 cut(s) 114, 957
CfoI GCGC 2 cut(s) 8, 931
Cfr13I GGNCC 3 cut(s) 13, 70, 160
Csp6I GTAC 4 cut(s) 251, 511, 920, 979
CviAII CATG 9 cut(s) 58, 95, 557, 743, 763, 803, 879, 956, 1073
CviQI GTAC 4 cut(s) 251, 511, 920, 979
DdeI CTNAG 3 cut(s) 318, 411, 494
DpnI GATC 7 cut(s) 93, 167, 172, 569, 628, 643, 695
DpnII GATC 7 cut(s) 91, 165, 170, 567, 626, 641, 693
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
EaeI YGGCCR 1 cut(s) 504
Eam1104I CTCTTC 1 cut(s) 448
EarI CTCTTC 1 cut(s) 448
Ecl136II GAGCTC 1 cut(s) 1093
Eco130I CCWWGG 3 cut(s) 579, 742, 1054
Eco24I GRGCYC 2 cut(s) 802, 1095
Eco31I GGTCTC 1 cut(s) 450
Eco32I GATATC 1 cut(s) 214
Eco47I GGWCC 3 cut(s) 13, 70, 160
Eco53kI GAGCTC 1 cut(s) 1093
Eco57I CTGAAG 4 cut(s) 95, 326, 731, 909
Eco88I CYCGRG 1 cut(s) 217
EcoICRI GAGCTC 1 cut(s) 1093
EcoRII CCWGG 1 cut(s) 66
EcoRV GATATC 1 cut(s) 214
EcoT14I CCWWGG 3 cut(s) 579, 742, 1054
EcoT22I ATGCAT 1 cut(s) 1006
EcoT38I GRGCYC 2 cut(s) 802, 1095
ErhI CCWWGG 3 cut(s) 579, 742, 1054
Esp3I CGTCTC 1 cut(s) 306
FaeI CATG 9 cut(s) 61, 98, 560, 746, 766, 806, 882, 959, 1076
FalI AAGNNNNNCTT 2 cut(s) 325, 357
FaqI GGGAC 2 cut(s) 381, 1003
FatI CATG 9 cut(s) 57, 94, 556, 742, 762, 802, 878, 955, 1072
FblI GTMKAC 1 cut(s) 540
FokI GGATG 1 cut(s) 788
FriOI GRGCYC 2 cut(s) 802, 1095
FspBI CTAG 4 cut(s) 201, 795, 939, 1096
GlaI GCGC 2 cut(s) 7, 930
HaeII RGCGCY 1 cut(s) 932
HaeIII GGCC 2 cut(s) 281, 506
HapII CCGG 3 cut(s) 645, 933, 982
HhaI GCGC 2 cut(s) 8, 931
Hin1II CATG 9 cut(s) 61, 98, 560, 746, 766, 806, 882, 959, 1076
Hin6I GCGC 2 cut(s) 6, 929
HinP1I GCGC 2 cut(s) 6, 929
HincII GTYRAC 4 cut(s) 198, 328, 541, 1078
HindII GTYRAC 4 cut(s) 198, 328, 541, 1078
HindIII AAGCTT 3 cut(s) 425, 782, 890
HinfI GANTC 4 cut(s) 222, 272, 755, 967
HpaII CCGG 3 cut(s) 645, 933, 982
HphI GGTGA 3 cut(s) 231, 617, 779
Hpy166II GTNNAC 4 cut(s) 198, 328, 541, 1078
Hpy188I TCNGA 3 cut(s) 170, 211, 306
Hpy188III TCNNGA 4 cut(s) 163, 219, 269, 293
Hpy8I GTNNAC 4 cut(s) 198, 328, 541, 1078
HpyAV CCTTC 5 cut(s) 70, 151, 264, 368, 933
HpyCH4III ACNGT 2 cut(s) 250, 820
HpyCH4IV ACGT 2 cut(s) 370, 663
HpyCH4V TGCA 9 cut(s) 147, 399, 812, 856, 862, 914, 955, 959, 1004
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 490, 682
HpyF3I CTNAG 3 cut(s) 318, 411, 494
HpySE526I ACGT 2 cut(s) 370, 663
Hsp92II CATG 9 cut(s) 61, 98, 560, 746, 766, 806, 882, 959, 1076
HspAI GCGC 2 cut(s) 6, 929
Kzo9I GATC 7 cut(s) 91, 165, 170, 567, 626, 641, 693
LmnI GCTCC 1 cut(s) 1090
LweI GCATC 1 cut(s) 849
MaeI CTAG 4 cut(s) 201, 795, 939, 1096
MaeII ACGT 2 cut(s) 370, 663
MaeIII GTNAC 3 cut(s) 406, 746, 814
MalI GATC 7 cut(s) 93, 167, 172, 569, 628, 643, 695
MboI GATC 7 cut(s) 91, 165, 170, 567, 626, 641, 693
MboII GAAGA 3 cut(s) 333, 465, 724
MfeI CAATTG 1 cut(s) 438
MflI RGATCY 5 cut(s) 170, 567, 626, 641, 693
MhlI GDGCHC 4 cut(s) 727, 802, 886, 1095
MluCI AATT 3 cut(s) 438, 560, 597
MnlI CCTC 7 cut(s) 18, 247, 577, 586, 714, 1080, 1094
Mph1103I ATGCAT 1 cut(s) 1006
MseI TTAA 2 cut(s) 900, 906
MslI CAYNNNNRTG 2 cut(s) 807, 960
MspI CCGG 3 cut(s) 645, 933, 982
MspR9I CCNGG 2 cut(s) 68, 933
MunI CAATTG 1 cut(s) 438
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 3 cut(s) 26, 490, 682
NciI CCSGG 1 cut(s) 933
NcoI CCATGG 1 cut(s) 742
NdeII GATC 7 cut(s) 91, 165, 170, 567, 626, 641, 693
NlaIII CATG 9 cut(s) 61, 98, 560, 746, 766, 806, 882, 959, 1076
NlaIV GGNNCC 1 cut(s) 695
NmeAIII GCCGAG 1 cut(s) 532
NsiI ATGCAT 1 cut(s) 1006
NspI RCATGY 1 cut(s) 959
PaeI GCATGC 1 cut(s) 959
PfeI GAWTC 4 cut(s) 222, 272, 755, 967
PflFI GACNNNGTC 1 cut(s) 665
Psp124BI GAGCTC 1 cut(s) 1095
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 695
PspPI GGNCC 3 cut(s) 13, 70, 160
PsuI RGATCY 5 cut(s) 170, 567, 626, 641, 693
PsyI GACNNNGTC 1 cut(s) 665
RsaI GTAC 4 cut(s) 252, 512, 921, 980
RsaNI GTAC 4 cut(s) 251, 511, 920, 979
RseI CAYNNNNRTG 2 cut(s) 807, 960
SacI GAGCTC 1 cut(s) 1095
SalI GTCGAC 1 cut(s) 539
SaqAI TTAA 2 cut(s) 900, 906
Sau3AI GATC 7 cut(s) 91, 165, 170, 567, 626, 641, 693
Sau96I GGNCC 3 cut(s) 13, 70, 160
ScrFI CCNGG 2 cut(s) 68, 933
SduI GDGCHC 4 cut(s) 727, 802, 886, 1095
SfaNI GCATC 1 cut(s) 849
SinI GGWCC 3 cut(s) 13, 70, 160
SmiMI CAYNNNNRTG 2 cut(s) 807, 960
SphI GCATGC 1 cut(s) 959
Sse9I AATT 3 cut(s) 438, 560, 597
SsiI CCGC 1 cut(s) 1015
SspMI CTAG 4 cut(s) 201, 795, 939, 1096
SstI GAGCTC 1 cut(s) 1095
StyD4I CCNGG 2 cut(s) 66, 931
StyI CCWWGG 3 cut(s) 579, 742, 1054
TaaI ACNGT 2 cut(s) 250, 820
TaiI ACGT 2 cut(s) 373, 666
TaqI TCGA 2 cut(s) 540, 791
TaqII GACCGA 3 cut(s) 30, 748, 859
TasI AATT 3 cut(s) 438, 560, 597
TatI WGTACW 1 cut(s) 510
TfiI GAWTC 4 cut(s) 222, 272, 755, 967
Tru1I TTAA 2 cut(s) 900, 906
Tru9I TTAA 2 cut(s) 900, 906
TscAI CASTG 2 cut(s) 422, 628
TspDTI ATGAA 1 cut(s) 573
TspGWI ACGGA 1 cut(s) 465
TspRI CASTG 2 cut(s) 422, 628
Tth111I GACNNNGTC 1 cut(s) 665
VpaK11BI GGWCC 3 cut(s) 13, 70, 160
XapI RAATTY 2 cut(s) 560, 597
XceI RCATGY 1 cut(s) 959
XmiI GTMKAC 1 cut(s) 540
XspI CTAG 4 cut(s) 201, 795, 939, 1096
Zsp2I ATGCAT 1 cut(s) 1006
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.