pycom02g11810

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0013590
Physical Location & Seq
Reverse (-)
8371268 .. 8372380
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g11810.1

Sequence Viewer

Length: 1113 bp
ATGAGCGTGATAAATCAAGGAAGGAGAGCAAATAAGTTGGTAGGAAACAAAAACAGTATTTTATACATGGACCTCAAGGACATCATAAGGAACCATGCCCTCCAGTTTCTACCTGCTAAATCACTTTTCAGGTTCACTGGAGTTTGTAGGGACTGGAAGCTCGATATCACAACTCCCTTCTTTGCCCACAAGCAGTCAAATAGCTTTCGTGATATCTCGGGCTTCTTTTTTCAATCCGGAACAGCCCCACCTTCATTCATATCTCTTGACCCCAAGGCATATGGTGTTCCAGATCCATCTTTGAGCTTCTTGCCTGAGCCGGTTGAGATAAGGAGTTCTTCCAATGGATTACTTTGCTGCCAGGCTCATGATGGCTCTAAGGCTTACTACATTTGCAATCCTGTTACTAGGAAGTGGAAAAAACTTCCCAAGCCAAATGCGGATCACGGATCTAACCCTGCTATTGTTCTCATCTTTGAACCATCTTTGCTCAATTTTGTGGCCGAGTACAAGCTCATATGTGTTTTTCCATCTGTTGATTTTGACAATGGGTATGAGTTTGAGATTTATTCCTCCAGGGATGAGACCTGGAGAGTTTCTGGTGAGATTTACTTTGGCCATCAACATCTCGTGCCAAGAACTGGTGTTCATGTGAACGACATAGTTTATTGGGTATTGGATTATCAGATTCTTGTTTTTGACCTGACGATGGAGCGCGCACAGCAACTTTCTGGCAATTTTTATGGAACTGGAGGAGTTGGGGCCCTGGGTCTGATGGATGGAAAGCTTTGTATGACAACGCCTAGTCATACAGGACTAACTGTGAAAGTGTTGGCTAACGCCTACACGAACACTATGGGGATGCACAGCATTGCCAGGGCATGGGAAACCAAACATCAGATCAGTCTTTCACCTCCACCGTTCAGGGCATCGGATTATAACCCTCGAATGACCAGTAATATATTGTTTGCCGGTGGAAATGTGGTTTTGTACCGGAGTGGCGGAAATTTGCACACGTATGACCTGAAGACTAAAGAAACTCAATGTTTGGGTGATGAGCTTGATCAGAATGCGAGGATTGTTTCTCATGTGAATAGTCTTGTGGAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

371

Amino Acids

41.43

Weight (kDa)

8.09

Isoelectric Point (pI)

34.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 109 - 239 1.7e-06 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 111 - 228 3.2e-11 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 113 - 243 8.2e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013590)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13490
malus_domestica MD02G1150300.v1.1 MD15G1264700.v1.1 MD15G1264800.v1.1
prunus_persica Prupe.7G152800_v2.0.a1
pyrus_communis pycom02g11810 pycom15g23050 pycom15g23060
rosa_chinensis RchiOBHm_Chr2g0101881
rosa_laevigata RLG00000017107
rosa_multiflora Rmu_sc0008071.1_g000001
rosa_roxburghii Rroxscaffold_2G00140970
rosa_rugosa Rorug02G0102800
rosa_samantha Rh2AG150100 Rh2BG155700 Rh2CG156000 Rh2DG155800
rosa_wichuraiana Rw2G011750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 939
Acc36I ACCTGC 1 cut(s) 121
AccB7I CCANNNNNTGG 2 cut(s) 641, 882
AccII CGCG 1 cut(s) 717
AccIII TCCGGA 1 cut(s) 236
AciI CCGC 2 cut(s) 440, 1002
AclWI GGATC 3 cut(s) 287, 450, 457
AcoI YGGCCR 2 cut(s) 501, 616
AcsI RAATTY 1 cut(s) 1006
AcuI CTGAAG 1 cut(s) 1046
AfaI GTAC 2 cut(s) 509, 992
AfiI CCNNNNNNNGG 3 cut(s) 641, 709, 882
AflIII ACRYGT 1 cut(s) 1014
AgsI TTSAA 2 cut(s) 233, 479
AjnI CCWGG 5 cut(s) 360, 575, 587, 765, 875
AluBI AGCT 6 cut(s) 160, 204, 306, 514, 787, 1060
AluI AGCT 6 cut(s) 160, 204, 306, 514, 787, 1060
Alw26I GTCTC 1 cut(s) 578
AlwI GGATC 3 cut(s) 287, 450, 457
Ama87I CYCGRG 1 cut(s) 217
Aor13HI TCCGGA 1 cut(s) 236
AoxI GGCC 3 cut(s) 501, 616, 762
ApaI GGGCCC 1 cut(s) 766
ApeKI GCWGC 1 cut(s) 357
ApoI RAATTY 1 cut(s) 1006
AspLEI GCGC 2 cut(s) 717, 719
AspS9I GGNCC 3 cut(s) 70, 762, 763
AsuHPI GGTGA 3 cut(s) 614, 903, 1064
AvaI CYCGRG 1 cut(s) 217
AvaII GGWCC 1 cut(s) 70
BaeGI GKGCMC 1 cut(s) 766
BalI TGGCCA 1 cut(s) 618
BanII GRGCYC 1 cut(s) 766
BauI CACGAG 1 cut(s) 629
BbsI GAAGAC 1 cut(s) 1034
BbvI GCAGC 1 cut(s) 344
BccI CCATC 8 cut(s) 304, 365, 490, 538, 627, 703, 769, 773
BciT130I CCWGG 5 cut(s) 362, 577, 589, 767, 877
BclI TGATCA 1 cut(s) 1063
BcoDI GTCTC 1 cut(s) 578
BfaI CTAG 3 cut(s) 408, 804, 1111
BfuAI ACCTGC 1 cut(s) 121
BglII AGATCT 1 cut(s) 1107
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
Bme1390I CCNGG 5 cut(s) 362, 577, 589, 767, 877
Bme18I GGWCC 1 cut(s) 70
BmeT110I CYCGRG 1 cut(s) 217
BmgT120I GGNCC 3 cut(s) 70, 762, 763
BmiI GGNNCC 3 cut(s) 92, 763, 764
BmrFI CCNGG 5 cut(s) 362, 577, 589, 767, 877
BmsI GCATC 2 cut(s) 852, 938
BpiI GAAGAC 1 cut(s) 1034
BpmI CTGGAG 5 cut(s) 86, 159, 559, 610, 771
Bpu10I CCTNAGC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 59
BsaAI YACGTR 1 cut(s) 1017
BsaI GGTCTC 1 cut(s) 578
BsaJI CCNNGG 5 cut(s) 273, 576, 765, 766, 876
BsaWI WCCGGW 2 cut(s) 236, 993
Bsc4I CCNNNNNNNGG 3 cut(s) 641, 709, 882
Bse118I RCCGGY 2 cut(s) 319, 971
Bse1I ACTGG 6 cut(s) 103, 142, 158, 646, 754, 954
Bse3DI GCAATG 1 cut(s) 870
BseAI TCCGGA 1 cut(s) 236
BseBI CCWGG 5 cut(s) 362, 577, 589, 767, 877
BseDI CCNNGG 5 cut(s) 273, 576, 765, 766, 876
BseGI GGATG 3 cut(s) 586, 784, 867
BseLI CCNNNNNNNGG 3 cut(s) 641, 709, 882
BseMI GCAATG 1 cut(s) 870
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 6 cut(s) 103, 142, 158, 646, 754, 954
BsePI GCGCGC 1 cut(s) 715
BseRI GAGGAG 1 cut(s) 768
BseSI GKGCMC 1 cut(s) 766
BseXI GCAGC 1 cut(s) 344
Bsh1236I CGCG 1 cut(s) 717
BshFI GGCC 3 cut(s) 503, 618, 764
BsiHKCI CYCGRG 1 cut(s) 217
BsiSI CCGG 4 cut(s) 237, 320, 972, 994
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 3 cut(s) 641, 709, 882
BsmAI GTCTC 1 cut(s) 578
BsmFI GGGAC 1 cut(s) 164
BsmI GAATGC 1 cut(s) 1075
BsnI GGCC 3 cut(s) 503, 618, 764
Bso31I GGTCTC 1 cut(s) 578
BsoBI CYCGRG 1 cut(s) 217
Bsp120I GGGCCC 1 cut(s) 762
Bsp1286I GDGCHC 1 cut(s) 766
Bsp13I TCCGGA 1 cut(s) 236
Bsp143I GATC 6 cut(s) 292, 442, 449, 900, 1063, 1107
BspACI CCGC 2 cut(s) 440, 1002
BspANI GGCC 3 cut(s) 503, 618, 764
BspCNI CTCAG 1 cut(s) 307
BspEI TCCGGA 1 cut(s) 236
BspFNI CGCG 1 cut(s) 717
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 3 cut(s) 92, 763, 764
BspMI ACCTGC 1 cut(s) 121
BspPI GGATC 3 cut(s) 287, 450, 457
BspTNI GGTCTC 1 cut(s) 578
BsrDI GCAATG 1 cut(s) 870
BsrFI RCCGGY 2 cut(s) 319, 971
BsrI ACTGG 6 cut(s) 103, 142, 158, 646, 754, 954
BssAI RCCGGY 2 cut(s) 319, 971
BssECI CCNNGG 5 cut(s) 273, 576, 765, 766, 876
BssHII GCGCGC 1 cut(s) 715
BssMI GATC 6 cut(s) 292, 442, 449, 900, 1063, 1107
BssSI CACGAG 1 cut(s) 629
BssT1I CCWWGG 1 cut(s) 273
Bst2BI CACGAG 1 cut(s) 629
Bst2UI CCWGG 5 cut(s) 362, 577, 589, 767, 877
Bst4CI ACNGT 3 cut(s) 56, 823, 921
BstBAI YACGTR 1 cut(s) 1017
BstC8I GCNNGC 1 cut(s) 717
BstDEI CTNAG 2 cut(s) 315, 378
BstF5I GGATG 3 cut(s) 586, 784, 867
BstFNI CGCG 1 cut(s) 717
BstHHI GCGC 2 cut(s) 717, 719
BstKTI GATC 6 cut(s) 295, 445, 452, 903, 1066, 1110
BstMAI GTCTC 1 cut(s) 578
BstMBI GATC 6 cut(s) 292, 442, 449, 900, 1063, 1107
BstMWI GCNNNNNNNGC 1 cut(s) 721
BstNI CCWGG 5 cut(s) 362, 577, 589, 767, 877
BstSCI CCNGG 5 cut(s) 360, 575, 587, 765, 875
BstSLI GKGCMC 1 cut(s) 766
BstUI CGCG 1 cut(s) 717
BstV1I GCAGC 1 cut(s) 344
BstV2I GAAGAC 1 cut(s) 1034
BstX2I RGATCY 3 cut(s) 292, 449, 1107
BstYI RGATCY 3 cut(s) 292, 449, 1107
BsuRI GGCC 3 cut(s) 503, 618, 764
BtsCI GGATG 3 cut(s) 586, 784, 867
BtsIMutI CAGTG 1 cut(s) 135
BveI ACCTGC 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 717
CciI TCATGA 1 cut(s) 367
CfoI GCGC 2 cut(s) 717, 719
Cfr10I RCCGGY 2 cut(s) 319, 971
Cfr13I GGNCC 3 cut(s) 70, 762, 763
Csp6I GTAC 2 cut(s) 508, 991
CviAII CATG 6 cut(s) 67, 95, 368, 650, 882, 1088
CviQI GTAC 2 cut(s) 508, 991
DdeI CTNAG 2 cut(s) 315, 378
DpnI GATC 6 cut(s) 294, 444, 451, 902, 1065, 1109
DpnII GATC 6 cut(s) 292, 442, 449, 900, 1063, 1107
EaeI YGGCCR 2 cut(s) 501, 616
EciI GGCGGA 1 cut(s) 1017
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 766
Eco31I GGTCTC 1 cut(s) 578
Eco32I GATATC 2 cut(s) 166, 214
Eco47I GGWCC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 1046
Eco88I CYCGRG 1 cut(s) 217
EcoO109I RGGNCCY 2 cut(s) 762, 763
EcoRII CCWGG 5 cut(s) 360, 575, 587, 765, 875
EcoRV GATATC 2 cut(s) 166, 214
EcoT14I CCWWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 766
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 6 cut(s) 70, 98, 371, 653, 885, 1091
FalI AAGNNNNNCTT 2 cut(s) 322, 354
FaqI GGGAC 1 cut(s) 164
FatI CATG 6 cut(s) 66, 94, 367, 649, 881, 1087
FauNDI CATATG 2 cut(s) 280, 518
FbaI TGATCA 1 cut(s) 1063
Fnu4HI GCNGC 1 cut(s) 358
FokI GGATG 3 cut(s) 593, 791, 874
FriOI GRGCYC 1 cut(s) 766
Fsp4HI GCNGC 1 cut(s) 358
FspBI CTAG 3 cut(s) 408, 804, 1111
GlaI GCGC 2 cut(s) 716, 718
GluI GCNGC 1 cut(s) 358
GsuI CTGGAG 5 cut(s) 86, 159, 559, 610, 771
HaeIII GGCC 3 cut(s) 503, 618, 764
HapII CCGG 4 cut(s) 237, 320, 972, 994
HhaI GCGC 2 cut(s) 717, 719
Hin1II CATG 6 cut(s) 70, 98, 371, 653, 885, 1091
Hin6I GCGC 2 cut(s) 715, 717
HinP1I GCGC 2 cut(s) 715, 717
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 1 cut(s) 688
HpaII CCGG 4 cut(s) 237, 320, 972, 994
HphI GGTGA 3 cut(s) 614, 903, 1064
Hpy166II GTNNAC 2 cut(s) 135, 655
Hpy188I TCNGA 5 cut(s) 687, 774, 900, 934, 1068
Hpy188III TCNNGA 5 cut(s) 209, 237, 266, 290, 368
Hpy8I GTNNAC 2 cut(s) 135, 655
HpyAV CCTTC 3 cut(s) 15, 187, 261
HpyCH4III ACNGT 3 cut(s) 56, 823, 921
HpyCH4IV ACGT 1 cut(s) 1016
HpyCH4V TGCA 3 cut(s) 396, 865, 1012
HpyF10VI GCNNNNNNNGC 1 cut(s) 721
HpyF3I CTNAG 2 cut(s) 315, 378
HpySE526I ACGT 1 cut(s) 1016
Hsp92II CATG 6 cut(s) 70, 98, 371, 653, 885, 1091
HspAI GCGC 2 cut(s) 715, 717
Kpn2I TCCGGA 1 cut(s) 236
Ksp22I TGATCA 1 cut(s) 1063
Kzo9I GATC 6 cut(s) 292, 442, 449, 900, 1063, 1107
LmnI GCTCC 1 cut(s) 712
Lsp1109I GCAGC 1 cut(s) 344
LweI GCATC 2 cut(s) 852, 938
MaeI CTAG 3 cut(s) 408, 804, 1111
MaeII ACGT 1 cut(s) 1016
MaeIII GTNAC 1 cut(s) 403
MalI GATC 6 cut(s) 294, 444, 451, 902, 1065, 1109
MboI GATC 6 cut(s) 292, 442, 449, 900, 1063, 1107
MboII GAAGA 2 cut(s) 330, 1039
MflI RGATCY 3 cut(s) 292, 449, 1107
MhlI GDGCHC 1 cut(s) 766
MlsI TGGCCA 1 cut(s) 618
MluCI AATT 3 cut(s) 493, 736, 1006
MluNI TGGCCA 1 cut(s) 618
MnlI CCTC 7 cut(s) 83, 110, 583, 746, 924, 954, 1068
Mox20I TGGCCA 1 cut(s) 618
MroI TCCGGA 1 cut(s) 236
MscI TGGCCA 1 cut(s) 618
MslI CAYNNNNRTG 1 cut(s) 1017
Msp20I TGGCCA 1 cut(s) 618
MspI CCGG 4 cut(s) 237, 320, 972, 994
MspR9I CCNGG 5 cut(s) 362, 577, 589, 767, 877
Mva1269I GAATGC 1 cut(s) 1075
MvaI CCWGG 5 cut(s) 362, 577, 589, 767, 877
MvnI CGCG 1 cut(s) 717
MwoI GCNNNNNNNGC 1 cut(s) 721
NdeI CATATG 2 cut(s) 280, 518
NdeII GATC 6 cut(s) 292, 442, 449, 900, 1063, 1107
NlaIII CATG 6 cut(s) 70, 98, 371, 653, 885, 1091
NlaIV GGNNCC 3 cut(s) 92, 763, 764
NmeAIII GCCGAG 1 cut(s) 529
PagI TCATGA 1 cut(s) 367
PasI CCCWGGG 1 cut(s) 766
PauI GCGCGC 1 cut(s) 715
PctI GAATGC 1 cut(s) 1075
PfeI GAWTC 1 cut(s) 688
PflMI CCANNNNNTGG 2 cut(s) 641, 882
PkrI GCNGC 1 cut(s) 359
Ppu21I YACGTR 1 cut(s) 1017
PsiI TTATAA 1 cut(s) 939
Psp6I CCWGG 5 cut(s) 360, 575, 587, 765, 875
PspGI CCWGG 5 cut(s) 360, 575, 587, 765, 875
PspN4I GGNNCC 3 cut(s) 92, 763, 764
PspOMI GGGCCC 1 cut(s) 762
PspPI GGNCC 3 cut(s) 70, 762, 763
PsuI RGATCY 3 cut(s) 292, 449, 1107
PteI GCGCGC 1 cut(s) 715
RsaI GTAC 2 cut(s) 509, 992
RsaNI GTAC 2 cut(s) 508, 991
RseI CAYNNNNRTG 1 cut(s) 1017
SatI GCNGC 1 cut(s) 358
Sau3AI GATC 6 cut(s) 292, 442, 449, 900, 1063, 1107
Sau96I GGNCC 3 cut(s) 70, 762, 763
ScrFI CCNGG 5 cut(s) 362, 577, 589, 767, 877
SduI GDGCHC 1 cut(s) 766
SfaNI GCATC 2 cut(s) 852, 938
SinI GGWCC 1 cut(s) 70
SmiMI CAYNNNNRTG 1 cut(s) 1017
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 3 cut(s) 493, 736, 1006
SsiI CCGC 2 cut(s) 440, 1002
SspMI CTAG 3 cut(s) 408, 804, 1111
StyD4I CCNGG 5 cut(s) 360, 575, 587, 765, 875
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 3 cut(s) 56, 823, 921
TaiI ACGT 1 cut(s) 1019
TaqI TCGA 2 cut(s) 162, 946
TasI AATT 3 cut(s) 493, 736, 1006
TatI WGTACW 1 cut(s) 507
TfiI GAWTC 1 cut(s) 688
TscAI CASTG 1 cut(s) 142
TseI GCWGC 1 cut(s) 357
TspDTI ATGAA 3 cut(s) 243, 247, 638
TspGWI ACGGA 1 cut(s) 462
TspRI CASTG 1 cut(s) 142
Van91I CCANNNNNTGG 2 cut(s) 641, 882
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 1 cut(s) 1006
XcmI CCANNNNNNNNNTGG 1 cut(s) 368
XspI CTAG 3 cut(s) 408, 804, 1111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.