MD15G1264800.v1.1

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013590
Physical Location & Seq
Reverse (-)
22688214 .. 22690397
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1264800.v1.1.491

Sequence Viewer

Length: 1113 bp
ATGAGCGTGATGGATCGGGGGAGGGGAGCAAATAAGTTGGTAGCAAACAAAAACAGTATTTTATACATGGACCTCAAGGACATCATTAGGAACCATGCCCTCCAGTTTCTACCTGCTAAATCACTTTTCAGGTTCACTGGAGTTTGTAGGGACTGGAAGCTCGATATCACAAGCCCTTTCTTTGCCCACAAGCAGTCAAATAGCTTTCATGATATCTCAGGCTTCTTTTGTCAATCCGGCACAGCCCCACCTTCATTCATATCTCTTGACCCCAATGCGTATGGTGTTCCAGATCCACCTCTGAACTTCTTGCCTGAGCCGGTTGAGATAAGGACTTCTTCCAATGGATTAATTTGCTGCCAGGGTCGTGATGGCTATAAGGCATACTACGTTTGCAATCCTGTTACTAGGAAGTGGAAAAAACTTCCCAAGCCAAACGCGGATCACGGATGCAACCCTGCTATTGTTCTCATCTTTGAACCATCTTTGCTCAATTTTGTGGCTGAGTACAAGCTCGTATGTGTTTTTCCATCCGTTGATTTTGACAATGGATATGAGTTTGAGATCTATTCCTCCAGGGATGAGTCTTGGAGAGTTTCTGGTGAGATTTACTTTGGCAATCATCCGCCCGTGCCAAGAACCGGTGTTCATGTGAATGACATAGTTTATTGGGTATTGGATTATCAGATTCTTGTTTTTGACCTGGCGATGGAGCGCGCACAACTTTCTGGCAGTTTTTGTGAAACAGGAGGAATTGGGGCCCTGGGTCGGATGGATGGAAAGCTTTGTCTGGCAAAGCCTAGTCTTACAGGACTAACTGTGAAAGTGTTGTCTAACGCCTACACGAACACTATGGGGATGCACAGCAATGTCAAGGCATGGGAAACGAAACATCAGATTAGTCTATCCCCTCCACCATTCGATTCAACGACTTATAACCATCGAATGATGACTAATTATATACTGTTTGCCGGTGGAAATGTGGTCTTGTATCGGAGTGGCGGAAAATTGCATACATATGACCTGAAGACTAAAGACACTCAATGTTTGGGTGATGAACTTGATCAGAATGCAAGGATTGTTTCGCATGTGAACAGTCTTGTGGAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

371

Amino Acids

41.42

Weight (kDa)

7.58

Isoelectric Point (pI)

31.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 110 - 238 5.8e-07 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 111 - 226 4e-10 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 113 - 240 1.9e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013590)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13490
malus_domestica MD02G1150300.v1.1 MD15G1264700.v1.1 MD15G1264800.v1.1
prunus_persica Prupe.7G152800_v2.0.a1
pyrus_communis pycom02g11810 pycom15g23050 pycom15g23060
rosa_chinensis RchiOBHm_Chr2g0101881
rosa_laevigata RLG00000017107
rosa_multiflora Rmu_sc0008071.1_g000001
rosa_roxburghii Rroxscaffold_2G00140970
rosa_rugosa Rorug02G0102800
rosa_samantha Rh2AG150100 Rh2BG155700 Rh2CG156000 Rh2DG155800
rosa_wichuraiana Rw2G011750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 936
Acc36I ACCTGC 1 cut(s) 121
AccII CGCG 2 cut(s) 440, 717
AciI CCGC 3 cut(s) 440, 626, 1002
AclWI GGATC 3 cut(s) 21, 287, 450
AcuI CTGAAG 1 cut(s) 1046
AfaI GTAC 1 cut(s) 509
AfiI CCNNNNNNNGG 3 cut(s) 641, 709, 768
AgeI ACCGGT 1 cut(s) 641
AgsI TTSAA 2 cut(s) 479, 927
AjnI CCWGG 4 cut(s) 360, 575, 702, 762
AluBI AGCT 4 cut(s) 160, 204, 514, 784
AluI AGCT 4 cut(s) 160, 204, 514, 784
AlwI GGATC 3 cut(s) 21, 287, 450
AoxI GGCC 1 cut(s) 759
ApaI GGGCCC 1 cut(s) 763
ApeKI GCWGC 1 cut(s) 357
AseI ATTAAT 1 cut(s) 350
AsiGI ACCGGT 1 cut(s) 641
AspLEI GCGC 2 cut(s) 717, 719
AspS9I GGNCC 3 cut(s) 70, 759, 760
AsuHPI GGTGA 2 cut(s) 614, 1064
AvaII GGWCC 1 cut(s) 70
BaeGI GKGCMC 1 cut(s) 763
BanII GRGCYC 1 cut(s) 763
BbsI GAAGAC 1 cut(s) 1034
BbvI GCAGC 1 cut(s) 344
BccI CCATC 8 cut(s) 4, 365, 490, 538, 703, 766, 770, 948
BciT130I CCWGG 4 cut(s) 362, 577, 704, 764
BclI TGATCA 1 cut(s) 1063
BfaI CTAG 3 cut(s) 408, 801, 1111
BfuAI ACCTGC 1 cut(s) 121
BglII AGATCT 2 cut(s) 564, 1107
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
Bme1390I CCNGG 4 cut(s) 362, 577, 704, 764
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 3 cut(s) 70, 759, 760
BmiI GGNNCC 3 cut(s) 92, 760, 761
BmrFI CCNGG 4 cut(s) 362, 577, 704, 764
BmsI GCATC 2 cut(s) 440, 849
BpiI GAAGAC 1 cut(s) 1034
BpmI CTGGAG 3 cut(s) 86, 159, 559
Bpu10I CCTNAGC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 59
BsaJI CCNNGG 4 cut(s) 361, 576, 762, 763
BsaWI WCCGGW 1 cut(s) 641
Bsc4I CCNNNNNNNGG 3 cut(s) 641, 709, 768
Bse118I RCCGGY 3 cut(s) 319, 641, 971
Bse1I ACTGG 3 cut(s) 103, 142, 158
Bse3DI GCAATG 1 cut(s) 874
BseBI CCWGG 4 cut(s) 362, 577, 704, 764
BseDI CCNNGG 4 cut(s) 361, 576, 762, 763
BseGI GGATG 7 cut(s) 455, 530, 586, 622, 777, 781, 864
BseLI CCNNNNNNNGG 3 cut(s) 641, 709, 768
BseMI GCAATG 1 cut(s) 874
BseMII CTCAG 3 cut(s) 231, 306, 495
BseNI ACTGG 3 cut(s) 103, 142, 158
BsePI GCGCGC 1 cut(s) 715
BseSI GKGCMC 1 cut(s) 763
BseXI GCAGC 1 cut(s) 344
Bsh1236I CGCG 2 cut(s) 440, 717
BshFI GGCC 1 cut(s) 761
BshTI ACCGGT 1 cut(s) 641
BsiSI CCGG 4 cut(s) 237, 320, 642, 972
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 3 cut(s) 641, 709, 768
BsmFI GGGAC 1 cut(s) 164
BsmI GAATGC 1 cut(s) 1075
BsnI GGCC 1 cut(s) 761
Bsp120I GGGCCC 1 cut(s) 759
Bsp1286I GDGCHC 1 cut(s) 763
Bsp143I GATC 6 cut(s) 13, 292, 442, 564, 1063, 1107
BspACI CCGC 3 cut(s) 440, 626, 1002
BspANI GGCC 1 cut(s) 761
BspCNI CTCAG 3 cut(s) 230, 307, 496
BspFNI CGCG 2 cut(s) 440, 717
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 3 cut(s) 92, 760, 761
BspMI ACCTGC 1 cut(s) 121
BspPI GGATC 3 cut(s) 21, 287, 450
BsrDI GCAATG 1 cut(s) 874
BsrFI RCCGGY 3 cut(s) 319, 641, 971
BsrI ACTGG 3 cut(s) 103, 142, 158
BssAI RCCGGY 3 cut(s) 319, 641, 971
BssECI CCNNGG 4 cut(s) 361, 576, 762, 763
BssHII GCGCGC 1 cut(s) 715
BssMI GATC 6 cut(s) 13, 292, 442, 564, 1063, 1107
Bst2UI CCWGG 4 cut(s) 362, 577, 704, 764
Bst4CI ACNGT 4 cut(s) 56, 820, 966, 1097
BstC8I GCNNGC 1 cut(s) 717
BstDEI CTNAG 3 cut(s) 217, 315, 504
BstF5I GGATG 7 cut(s) 455, 530, 586, 622, 777, 781, 864
BstFNI CGCG 2 cut(s) 440, 717
BstHHI GCGC 2 cut(s) 717, 719
BstKTI GATC 6 cut(s) 16, 295, 445, 567, 1066, 1110
BstMBI GATC 6 cut(s) 13, 292, 442, 564, 1063, 1107
BstNI CCWGG 4 cut(s) 362, 577, 704, 764
BstNSI RCATGY 1 cut(s) 1091
BstSCI CCNGG 4 cut(s) 360, 575, 702, 762
BstSLI GKGCMC 1 cut(s) 763
BstUI CGCG 2 cut(s) 440, 717
BstV1I GCAGC 1 cut(s) 344
BstV2I GAAGAC 1 cut(s) 1034
BstX2I RGATCY 3 cut(s) 292, 564, 1107
BstYI RGATCY 3 cut(s) 292, 564, 1107
BsuRI GGCC 1 cut(s) 761
BtgZI GCGATG 1 cut(s) 722
BtsCI GGATG 7 cut(s) 455, 530, 586, 622, 777, 781, 864
BtsIMutI CAGTG 1 cut(s) 135
BveI ACCTGC 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 717
CciI TCATGA 1 cut(s) 208
CfoI GCGC 2 cut(s) 717, 719
Cfr10I RCCGGY 3 cut(s) 319, 641, 971
Cfr13I GGNCC 3 cut(s) 70, 759, 760
Csp6I GTAC 1 cut(s) 508
CspAI ACCGGT 1 cut(s) 641
CviAII CATG 6 cut(s) 67, 95, 209, 650, 879, 1088
CviQI GTAC 1 cut(s) 508
DdeI CTNAG 3 cut(s) 217, 315, 504
DpnI GATC 6 cut(s) 15, 294, 444, 566, 1065, 1109
DpnII GATC 6 cut(s) 13, 292, 442, 564, 1063, 1107
EciI GGCGGA 2 cut(s) 615, 1017
Eco24I GRGCYC 1 cut(s) 763
Eco32I GATATC 2 cut(s) 166, 214
Eco47I GGWCC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 1046
EcoO109I RGGNCCY 2 cut(s) 759, 760
EcoRII CCWGG 4 cut(s) 360, 575, 702, 762
EcoRV GATATC 2 cut(s) 166, 214
EcoT38I GRGCYC 1 cut(s) 763
FaeI CATG 6 cut(s) 70, 98, 212, 653, 882, 1091
FalI AAGNNNNNCTT 2 cut(s) 322, 354
FaqI GGGAC 1 cut(s) 164
FatI CATG 6 cut(s) 66, 94, 208, 649, 878, 1087
FauNDI CATATG 1 cut(s) 1018
FbaI TGATCA 1 cut(s) 1063
Fnu4HI GCNGC 1 cut(s) 358
FokI GGATG 7 cut(s) 462, 517, 593, 609, 784, 788, 871
FriOI GRGCYC 1 cut(s) 763
Fsp4HI GCNGC 1 cut(s) 358
FspBI CTAG 3 cut(s) 408, 801, 1111
GlaI GCGC 2 cut(s) 716, 718
GluI GCNGC 1 cut(s) 358
GsuI CTGGAG 3 cut(s) 86, 159, 559
HaeIII GGCC 1 cut(s) 761
HapII CCGG 4 cut(s) 237, 320, 642, 972
HhaI GCGC 2 cut(s) 717, 719
Hin1II CATG 6 cut(s) 70, 98, 212, 653, 882, 1091
Hin6I GCGC 2 cut(s) 715, 717
HinP1I GCGC 2 cut(s) 715, 717
HindIII AAGCTT 1 cut(s) 782
HinfI GANTC 3 cut(s) 584, 688, 923
HpaII CCGG 4 cut(s) 237, 320, 642, 972
HphI GGTGA 2 cut(s) 614, 1064
Hpy166II GTNNAC 2 cut(s) 135, 1093
Hpy188I TCNGA 6 cut(s) 303, 687, 771, 897, 996, 1068
Hpy188III TCNNGA 4 cut(s) 209, 266, 290, 368
Hpy8I GTNNAC 2 cut(s) 135, 1093
HpyAV CCTTC 1 cut(s) 261
HpyCH4III ACNGT 4 cut(s) 56, 820, 966, 1097
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 5 cut(s) 396, 453, 862, 1012, 1073
HpyF3I CTNAG 3 cut(s) 217, 315, 504
HpySE526I ACGT 1 cut(s) 390
Hsp92II CATG 6 cut(s) 70, 98, 212, 653, 882, 1091
HspAI GCGC 2 cut(s) 715, 717
Ksp22I TGATCA 1 cut(s) 1063
Kzo9I GATC 6 cut(s) 13, 292, 442, 564, 1063, 1107
LmnI GCTCC 2 cut(s) 26, 712
Lsp1109I GCAGC 1 cut(s) 344
LweI GCATC 2 cut(s) 440, 849
MaeI CTAG 3 cut(s) 408, 801, 1111
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 1 cut(s) 403
MalI GATC 6 cut(s) 15, 294, 444, 566, 1065, 1109
MboI GATC 6 cut(s) 13, 292, 442, 564, 1063, 1107
MboII GAAGA 2 cut(s) 330, 1039
MflI RGATCY 3 cut(s) 292, 564, 1107
MhlI GDGCHC 1 cut(s) 763
MluCI AATT 5 cut(s) 351, 493, 753, 955, 1007
MlyI GAGTC 1 cut(s) 593
MmeI TCCRAC 1 cut(s) 749
MnlI CCTC 7 cut(s) 15, 83, 110, 309, 583, 743, 921
MseI TTAA 1 cut(s) 350
MslI CAYNNNNRTG 3 cut(s) 654, 867, 1017
MspI CCGG 4 cut(s) 237, 320, 642, 972
MspR9I CCNGG 4 cut(s) 362, 577, 704, 764
Mva1269I GAATGC 1 cut(s) 1075
MvaI CCWGG 4 cut(s) 362, 577, 704, 764
MvnI CGCG 2 cut(s) 440, 717
NdeI CATATG 1 cut(s) 1018
NdeII GATC 6 cut(s) 13, 292, 442, 564, 1063, 1107
NlaIII CATG 6 cut(s) 70, 98, 212, 653, 882, 1091
NlaIV GGNNCC 3 cut(s) 92, 760, 761
NspI RCATGY 1 cut(s) 1091
PagI TCATGA 1 cut(s) 208
PasI CCCWGGG 1 cut(s) 763
PauI GCGCGC 1 cut(s) 715
PctI GAATGC 1 cut(s) 1075
PfeI GAWTC 2 cut(s) 688, 923
PinAI ACCGGT 1 cut(s) 641
PkrI GCNGC 1 cut(s) 359
PleI GAGTC 1 cut(s) 592
PpsI GAGTC 1 cut(s) 592
PshBI ATTAAT 1 cut(s) 350
PsiI TTATAA 1 cut(s) 936
Psp6I CCWGG 4 cut(s) 360, 575, 702, 762
PspGI CCWGG 4 cut(s) 360, 575, 702, 762
PspN4I GGNNCC 3 cut(s) 92, 760, 761
PspOMI GGGCCC 1 cut(s) 759
PspPI GGNCC 3 cut(s) 70, 759, 760
PsuI RGATCY 3 cut(s) 292, 564, 1107
PteI GCGCGC 1 cut(s) 715
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
RseI CAYNNNNRTG 3 cut(s) 654, 867, 1017
SaqAI TTAA 1 cut(s) 350
SatI GCNGC 1 cut(s) 358
Sau3AI GATC 6 cut(s) 13, 292, 442, 564, 1063, 1107
Sau96I GGNCC 3 cut(s) 70, 759, 760
SchI GAGTC 1 cut(s) 593
ScrFI CCNGG 4 cut(s) 362, 577, 704, 764
SduI GDGCHC 1 cut(s) 763
SfaNI GCATC 2 cut(s) 440, 849
SinI GGWCC 1 cut(s) 70
SmiMI CAYNNNNRTG 3 cut(s) 654, 867, 1017
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 5 cut(s) 351, 493, 753, 955, 1007
SsiI CCGC 3 cut(s) 440, 626, 1002
SspMI CTAG 3 cut(s) 408, 801, 1111
StyD4I CCNGG 4 cut(s) 360, 575, 702, 762
TaaI ACNGT 4 cut(s) 56, 820, 966, 1097
TaiI ACGT 1 cut(s) 393
TaqI TCGA 3 cut(s) 162, 921, 943
TasI AATT 5 cut(s) 351, 493, 753, 955, 1007
TatI WGTACW 1 cut(s) 507
TfiI GAWTC 2 cut(s) 688, 923
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 1 cut(s) 142
TseI GCWGC 1 cut(s) 357
TspDTI ATGAA 5 cut(s) 197, 243, 247, 638, 1071
TspGWI ACGGA 2 cut(s) 462, 523
TspRI CASTG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 70
VspI ATTAAT 1 cut(s) 350
XceI RCATGY 1 cut(s) 1091
XcmI CCANNNNNNNNNTGG 1 cut(s) 368
XspI CTAG 3 cut(s) 408, 801, 1111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.