pycom15g23060

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013590
Physical Location & Seq
Reverse (-)
17126607 .. 17127724
1118 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g23060.2

Sequence Viewer

Length: 1044 bp
ATGAGCGTGATGGATCGAGAAAGGAGAGCAAATAAGTTGGTAGCAAACAAAAACAGTATTTTATACATGGACCTCAAGGACATCATTAGGAACCATGCCCTCCAGTTTCTACCTGCTAAATCACTTTTCAGGTTCACTGGAGTTTGTAGGGACTGGAAGCTCGATATCACAACCCCTTTCTTTGCCCACAAGCAGTCAAATAGCTTTCATGATATATCGGGCTTCTTTTGTCAATCCGGAACAGCCCCACCTTCATTCATATCTCTTGACCCCAATGCGTATGGTGTTCCAGATCCACCTCTGAACTTCTTGCCTGAGCCGGTTGAGATAAGGACTTCTTCCAATGGATTACTTTGCTGCCAGGGTCGTGATGGCTATAAGGCTTACTACATTTGCAATCCTGTTACTAGGAAGTGGAAAATACTTCCCAAGCCAAACGCGGATCACGGATGTAACCCTGCTATTGTTCTCCTCTTTGAACCGTCTTTGCTCAATTTTGTGGCCGAGGATGAGTCTTGGAGAGTTTCTGGTGAGATTTACTTCGGCAATCATCCGCCTGTGCCACGAACCGGTGTTCATGTGAACAACATAGTTTATTGGGTATTGGATTATCAGATTCTTGTTTTTGACCTGACGATGGAGCGCGCACAACAACTTTCTGGCAGTTTTTGTGATACAGGAGGAACTGGGGCCTTGGGTCTGATGGATGGAAAGCTTTGTCTGACAAAGCCTAGTCCTACAGGACTAACTGTGAAAGTGTTGTCTAACGCCTACACGAACACTATGGGGATGCACAGCAATGTCAGGGCATGGGAAACGAAACATCAGATTAGTCTATCACCTCCACCATTCGATTCAACGACTTATAACCATCGAATGATGACTAATTATATATTGTTTGCCGGTGGAAATGTGGTCTTGTACCGGAGTGGCGGAAAATTGCATGCTTATGACCTGAAGACTAAAGAAACTCAATGTTTGGGTGATGAACTTGATCAGAATGCAAGGATTGTTTCGCATGTGAACAGTCTTGTGGAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

348

Amino Acids

38.86

Weight (kDa)

8.03

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013590)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13490
malus_domestica MD02G1150300.v1.1 MD15G1264700.v1.1 MD15G1264800.v1.1
prunus_persica Prupe.7G152800_v2.0.a1
pyrus_communis pycom02g11810 pycom15g23050 pycom15g23060
rosa_chinensis RchiOBHm_Chr2g0101881
rosa_laevigata RLG00000017107
rosa_multiflora Rmu_sc0008071.1_g000001
rosa_roxburghii Rroxscaffold_2G00140970
rosa_rugosa Rorug02G0102800
rosa_samantha Rh2AG150100 Rh2BG155700 Rh2CG156000 Rh2DG155800
rosa_wichuraiana Rw2G011750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 867
Acc36I ACCTGC 1 cut(s) 121
AccII CGCG 2 cut(s) 440, 645
AccIII TCCGGA 1 cut(s) 236
AciI CCGC 3 cut(s) 440, 554, 933
AclWI GGATC 3 cut(s) 21, 287, 450
AcoI YGGCCR 1 cut(s) 501
AcuI CTGAAG 1 cut(s) 977
AfaI GTAC 1 cut(s) 923
AfiI CCNNNNNNNGG 2 cut(s) 569, 637
AgeI ACCGGT 1 cut(s) 569
AgsI TTSAA 2 cut(s) 479, 858
AjnI CCWGG 1 cut(s) 360
AluBI AGCT 3 cut(s) 160, 204, 715
AluI AGCT 3 cut(s) 160, 204, 715
AlwI GGATC 3 cut(s) 21, 287, 450
Aor13HI TCCGGA 1 cut(s) 236
AoxI GGCC 2 cut(s) 501, 690
ApeKI GCWGC 1 cut(s) 357
AsiGI ACCGGT 1 cut(s) 569
AspLEI GCGC 2 cut(s) 645, 647
AspS9I GGNCC 2 cut(s) 70, 690
AsuHPI GGTGA 3 cut(s) 542, 831, 995
AvaII GGWCC 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 965
BbvI GCAGC 1 cut(s) 344
BccI CCATC 6 cut(s) 4, 365, 631, 697, 701, 879
BciT130I CCWGG 1 cut(s) 362
BclI TGATCA 1 cut(s) 994
BfaI CTAG 3 cut(s) 408, 732, 1042
BfmI CTRYAG 1 cut(s) 738
BfuAI ACCTGC 1 cut(s) 121
BglII AGATCT 1 cut(s) 1038
BisI GCNGC 1 cut(s) 358
BlsI GCNGC 1 cut(s) 359
Bme1390I CCNGG 1 cut(s) 362
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 70, 690
BmiI GGNNCC 2 cut(s) 92, 691
BmrFI CCNGG 1 cut(s) 362
BmrI ACTGGG 1 cut(s) 696
BmsI GCATC 1 cut(s) 780
BmuI ACTGGG 1 cut(s) 696
BpiI GAAGAC 1 cut(s) 965
BpmI CTGGAG 2 cut(s) 86, 159
Bpu10I CCTNAGC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 59
BsaJI CCNNGG 3 cut(s) 361, 504, 693
BsaWI WCCGGW 3 cut(s) 236, 569, 924
Bsc4I CCNNNNNNNGG 2 cut(s) 569, 637
Bse118I RCCGGY 3 cut(s) 319, 569, 902
Bse1I ACTGG 4 cut(s) 103, 142, 158, 691
Bse3DI GCAATG 1 cut(s) 805
BseAI TCCGGA 1 cut(s) 236
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 3 cut(s) 361, 504, 693
BseGI GGATG 5 cut(s) 455, 514, 550, 712, 795
BseLI CCNNNNNNNGG 2 cut(s) 569, 637
BseMI GCAATG 1 cut(s) 805
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 4 cut(s) 103, 142, 158, 691
BsePI GCGCGC 1 cut(s) 643
BseRI GAGGAG 1 cut(s) 461
BseXI GCAGC 1 cut(s) 344
Bsh1236I CGCG 2 cut(s) 440, 645
BshFI GGCC 2 cut(s) 503, 692
BshTI ACCGGT 1 cut(s) 569
BsiSI CCGG 5 cut(s) 237, 320, 570, 903, 925
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 2 cut(s) 569, 637
BsmFI GGGAC 1 cut(s) 164
BsmI GAATGC 1 cut(s) 1006
BsnI GGCC 2 cut(s) 503, 692
Bsp13I TCCGGA 1 cut(s) 236
Bsp143I GATC 5 cut(s) 13, 292, 442, 994, 1038
BspACI CCGC 3 cut(s) 440, 554, 933
BspANI GGCC 2 cut(s) 503, 692
BspCNI CTCAG 1 cut(s) 307
BspEI TCCGGA 1 cut(s) 236
BspFNI CGCG 2 cut(s) 440, 645
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 92, 691
BspMI ACCTGC 1 cut(s) 121
BspPI GGATC 3 cut(s) 21, 287, 450
BsrDI GCAATG 1 cut(s) 805
BsrFI RCCGGY 3 cut(s) 319, 569, 902
BsrI ACTGG 4 cut(s) 103, 142, 158, 691
BssAI RCCGGY 3 cut(s) 319, 569, 902
BssECI CCNNGG 3 cut(s) 361, 504, 693
BssHII GCGCGC 1 cut(s) 643
BssMI GATC 5 cut(s) 13, 292, 442, 994, 1038
BssT1I CCWWGG 1 cut(s) 693
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 4 cut(s) 56, 483, 751, 1028
BstC8I GCNNGC 2 cut(s) 645, 945
BstDEI CTNAG 1 cut(s) 315
BstF5I GGATG 5 cut(s) 455, 514, 550, 712, 795
BstFNI CGCG 2 cut(s) 440, 645
BstHHI GCGC 2 cut(s) 645, 647
BstKTI GATC 5 cut(s) 16, 295, 445, 997, 1041
BstMBI GATC 5 cut(s) 13, 292, 442, 994, 1038
BstNI CCWGG 1 cut(s) 362
BstNSI RCATGY 2 cut(s) 947, 1022
BstSCI CCNGG 1 cut(s) 360
BstSFI CTRYAG 1 cut(s) 738
BstUI CGCG 2 cut(s) 440, 645
BstV1I GCAGC 1 cut(s) 344
BstV2I GAAGAC 1 cut(s) 965
BstX2I RGATCY 2 cut(s) 292, 1038
BstYI RGATCY 2 cut(s) 292, 1038
BsuRI GGCC 2 cut(s) 503, 692
BtsCI GGATG 5 cut(s) 455, 514, 550, 712, 795
BtsIMutI CAGTG 1 cut(s) 135
BveI ACCTGC 1 cut(s) 121
Cac8I GCNNGC 2 cut(s) 645, 945
CciI TCATGA 1 cut(s) 208
CfoI GCGC 2 cut(s) 645, 647
Cfr10I RCCGGY 3 cut(s) 319, 569, 902
Cfr13I GGNCC 2 cut(s) 70, 690
Csp6I GTAC 1 cut(s) 922
CspAI ACCGGT 1 cut(s) 569
CviAII CATG 7 cut(s) 67, 95, 209, 578, 810, 944, 1019
CviQI GTAC 1 cut(s) 922
DdeI CTNAG 1 cut(s) 315
DpnI GATC 5 cut(s) 15, 294, 444, 996, 1040
DpnII GATC 5 cut(s) 13, 292, 442, 994, 1038
EaeI YGGCCR 1 cut(s) 501
EciI GGCGGA 2 cut(s) 543, 948
Eco130I CCWWGG 1 cut(s) 693
Eco32I GATATC 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 977
EcoO109I RGGNCCY 1 cut(s) 690
EcoRII CCWGG 1 cut(s) 360
EcoRV GATATC 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 693
ErhI CCWWGG 1 cut(s) 693
FaeI CATG 7 cut(s) 70, 98, 212, 581, 813, 947, 1022
FalI AAGNNNNNCTT 2 cut(s) 322, 354
FaqI GGGAC 1 cut(s) 164
FatI CATG 7 cut(s) 66, 94, 208, 577, 809, 943, 1018
FbaI TGATCA 1 cut(s) 994
Fnu4HI GCNGC 1 cut(s) 358
FokI GGATG 5 cut(s) 462, 521, 537, 719, 802
Fsp4HI GCNGC 1 cut(s) 358
FspBI CTAG 3 cut(s) 408, 732, 1042
GlaI GCGC 2 cut(s) 644, 646
GluI GCNGC 1 cut(s) 358
GsuI CTGGAG 2 cut(s) 86, 159
HaeIII GGCC 2 cut(s) 503, 692
HapII CCGG 5 cut(s) 237, 320, 570, 903, 925
HhaI GCGC 2 cut(s) 645, 647
Hin1II CATG 7 cut(s) 70, 98, 212, 581, 813, 947, 1022
Hin6I GCGC 2 cut(s) 643, 645
HinP1I GCGC 2 cut(s) 643, 645
HindIII AAGCTT 1 cut(s) 713
HinfI GANTC 3 cut(s) 512, 616, 854
HpaII CCGG 5 cut(s) 237, 320, 570, 903, 925
HphI GGTGA 3 cut(s) 542, 831, 995
Hpy166II GTNNAC 3 cut(s) 135, 583, 1024
Hpy188I TCNGA 6 cut(s) 303, 615, 702, 723, 828, 999
Hpy188III TCNNGA 6 cut(s) 17, 209, 237, 266, 290, 368
Hpy8I GTNNAC 3 cut(s) 135, 583, 1024
HpyAV CCTTC 1 cut(s) 261
HpyCH4III ACNGT 4 cut(s) 56, 483, 751, 1028
HpyCH4V TGCA 4 cut(s) 396, 793, 943, 1004
HpyF3I CTNAG 1 cut(s) 315
Hsp92II CATG 7 cut(s) 70, 98, 212, 581, 813, 947, 1022
HspAI GCGC 2 cut(s) 643, 645
Kpn2I TCCGGA 1 cut(s) 236
Ksp22I TGATCA 1 cut(s) 994
Kzo9I GATC 5 cut(s) 13, 292, 442, 994, 1038
LmnI GCTCC 1 cut(s) 640
Lsp1109I GCAGC 1 cut(s) 344
LweI GCATC 1 cut(s) 780
MaeI CTAG 3 cut(s) 408, 732, 1042
MaeIII GTNAC 2 cut(s) 403, 452
MalI GATC 5 cut(s) 15, 294, 444, 996, 1040
MboI GATC 5 cut(s) 13, 292, 442, 994, 1038
MboII GAAGA 2 cut(s) 330, 970
MflI RGATCY 2 cut(s) 292, 1038
MluCI AATT 3 cut(s) 493, 886, 938
MlyI GAGTC 1 cut(s) 521
MnlI CCTC 7 cut(s) 83, 110, 309, 482, 499, 674, 852
MroI TCCGGA 1 cut(s) 236
MslI CAYNNNNRTG 2 cut(s) 798, 948
MspI CCGG 5 cut(s) 237, 320, 570, 903, 925
MspR9I CCNGG 1 cut(s) 362
Mva1269I GAATGC 1 cut(s) 1006
MvaI CCWGG 1 cut(s) 362
MvnI CGCG 2 cut(s) 440, 645
NdeII GATC 5 cut(s) 13, 292, 442, 994, 1038
NlaIII CATG 7 cut(s) 70, 98, 212, 581, 813, 947, 1022
NlaIV GGNNCC 2 cut(s) 92, 691
NmeAIII GCCGAG 1 cut(s) 529
NspI RCATGY 2 cut(s) 947, 1022
PaeI GCATGC 1 cut(s) 947
PagI TCATGA 1 cut(s) 208
PauI GCGCGC 1 cut(s) 643
PctI GAATGC 1 cut(s) 1006
PfeI GAWTC 2 cut(s) 616, 854
PinAI ACCGGT 1 cut(s) 569
PkrI GCNGC 1 cut(s) 359
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
PsiI TTATAA 1 cut(s) 867
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 2 cut(s) 92, 691
PspPI GGNCC 2 cut(s) 70, 690
PsuI RGATCY 2 cut(s) 292, 1038
PteI GCGCGC 1 cut(s) 643
RsaI GTAC 1 cut(s) 923
RsaNI GTAC 1 cut(s) 922
RseI CAYNNNNRTG 2 cut(s) 798, 948
SatI GCNGC 1 cut(s) 358
Sau3AI GATC 5 cut(s) 13, 292, 442, 994, 1038
Sau96I GGNCC 2 cut(s) 70, 690
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 1 cut(s) 362
SfaNI GCATC 1 cut(s) 780
SfcI CTRYAG 1 cut(s) 738
SinI GGWCC 1 cut(s) 70
SmiMI CAYNNNNRTG 2 cut(s) 798, 948
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SphI GCATGC 1 cut(s) 947
Sse9I AATT 3 cut(s) 493, 886, 938
SsiI CCGC 3 cut(s) 440, 554, 933
SspMI CTAG 3 cut(s) 408, 732, 1042
StyD4I CCNGG 1 cut(s) 360
StyI CCWWGG 1 cut(s) 693
TaaI ACNGT 4 cut(s) 56, 483, 751, 1028
TaqI TCGA 4 cut(s) 16, 162, 852, 874
TasI AATT 3 cut(s) 493, 886, 938
TfiI GAWTC 2 cut(s) 616, 854
TscAI CASTG 1 cut(s) 142
TseI GCWGC 1 cut(s) 357
TspDTI ATGAA 5 cut(s) 197, 243, 247, 566, 1002
TspGWI ACGGA 1 cut(s) 462
TspRI CASTG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 70
XceI RCATGY 2 cut(s) 947, 1022
XcmI CCANNNNNNNNNTGG 1 cut(s) 368
XspI CTAG 3 cut(s) 408, 732, 1042
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.