Prupe.7G152800_v2.0.a1

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013590
Physical Location & Seq
Forward (+)
16302303 .. 16304702
2400 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G152800.1

Sequence Viewer

Length: 1101 bp
ATGGATCGAGGAAGGAGAGCAAATCAGGTACTAGTAAACAAAAACAGTAAGATATACATGGACCTCAAGGACATCGTTAGGGATCATGCCCTCCCATATCTTCCTGCTAAATCACTTTTCAGGTTCACTGGAGTTTGTAGGGACTGGAAGCTCGACATCCTAACTCCTTTCTTTGCCCACAAGCAGTCGAATTGTTTTTCTGATATCTCGGGCTTCTTTTATCAATCCAGAGCAGACCCATCTTCATTCATATCTCTTGACCGCAATGCATATGGTGTTCCAGACCCATGTCTGAAGTTCTTGCCTGAGCCAGTTGACATAAGGACTTCTTCCAATGGTTTACTTTGCTGCCAGGGTCGTGATGGCTACAAGGCTTATTACATATGCAATCCTGTTACTAAGAAGTGGAAACAACTTCCTAAGGCAAATGCTGATCATGGATCTGACCCTGCTATTGTTCTCATCTTTGAACCATCGTTGCTGAACTTTGTGGCCGAGTACAAGCTAGTATGTGCTTTTCCATCCGTTGATTTTGACAATGGATATGAATTTGAGATTTATTCCTCCAAGGAGGGGTCTTGGAGAGTTTCTGGTGAGATTTACTTTGGCAATAAAACTCTTGTGCCAAGATCTGGTGTTCATGTGAACGACATAGTTTATTGGCAGGCAATGGGTTCTCAGATTCTTGTTTTTGACCTGAAGATGGAGCGCACACAACTCCTCTATGGCGATTTTTACGGCACGGGAGGATGTGCGGCCCTGGGTCTGATGGATGGAAAGCTTTGTTTGACAAAGGCTCAGTCTTCTGGATTAACTGTGAATGTATTGTCTAACGCCTACACAAACACAATGGAGATGAACAGCAAGGCCAGGACATGGAAAACAAAACATCAGATCACTCTATCACCTTCACCCTTCGCTCCGGCTGCTGATCGCTTGTCAAGTAACATAATGTTTGCCAGTGGAAATGTGGTCTTGTTTCGCAGTGGCGGAAAAATCTATTCGTACAACCTGAAGACTAAAGAAACTCAATGTGTGGGTGATGAATTTGATTACGATGCGAGGATTGTCTCGCATGTGAACAGTCTTGTCGAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

367

Amino Acids

41.07

Weight (kDa)

8.55

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013590)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13490
malus_domestica MD02G1150300.v1.1 MD15G1264700.v1.1 MD15G1264800.v1.1
prunus_persica Prupe.7G152800_v2.0.a1
pyrus_communis pycom02g11810 pycom15g23050 pycom15g23060
rosa_chinensis RchiOBHm_Chr2g0101881
rosa_laevigata RLG00000017107
rosa_multiflora Rmu_sc0008071.1_g000001
rosa_roxburghii Rroxscaffold_2G00140970
rosa_rugosa Rorug02G0102800
rosa_samantha Rh2AG150100 Rh2BG155700 Rh2CG156000 Rh2DG155800
rosa_wichuraiana Rw2G011750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 632, 876
AciI CCGC 3 cut(s) 262, 755, 990
AclWI GGATC 3 cut(s) 12, 90, 448
AcoI YGGCCR 1 cut(s) 492
AcsI RAATTY 2 cut(s) 548, 1046
AcuI CTGAAG 3 cut(s) 314, 719, 1034
AfaI GTAC 3 cut(s) 30, 500, 1007
AfiI CCNNNNNNNGG 4 cut(s) 573, 632, 703, 876
AgsI TTSAA 1 cut(s) 470
AhlI ACTAGT 1 cut(s) 31
AjnI CCWGG 3 cut(s) 351, 759, 869
AluBI AGCT 3 cut(s) 151, 505, 781
AluI AGCT 3 cut(s) 151, 505, 781
Alw26I GTCTC 1 cut(s) 1075
AlwI GGATC 3 cut(s) 12, 90, 448
Ama87I CYCGRG 1 cut(s) 208
AoxI GGCC 3 cut(s) 492, 756, 867
ApeKI GCWGC 2 cut(s) 348, 926
ApoI RAATTY 2 cut(s) 548, 1046
ArsI GACNNNNNNTTYG 2 cut(s) 785, 817
AspLEI GCGC 1 cut(s) 711
AspS9I GGNCC 2 cut(s) 61, 757
AsuHPI GGTGA 4 cut(s) 605, 897, 903, 1052
AvaI CYCGRG 1 cut(s) 208
AvaII GGWCC 1 cut(s) 61
AxyI CCTNAGG 1 cut(s) 420
BbsI GAAGAC 2 cut(s) 795, 1022
BbvI GCAGC 2 cut(s) 335, 913
BccI CCATC 7 cut(s) 247, 356, 481, 529, 697, 763, 767
BceAI ACGGC 1 cut(s) 754
BciT130I CCWGG 3 cut(s) 353, 761, 871
BclI TGATCA 1 cut(s) 433
BcoDI GTCTC 1 cut(s) 1075
BcuI ACTAGT 1 cut(s) 31
BfaI CTAG 3 cut(s) 32, 506, 1099
BglII AGATCT 2 cut(s) 629, 1095
BisI GCNGC 3 cut(s) 349, 756, 927
BlsI GCNGC 3 cut(s) 350, 757, 928
Bme1390I CCNGG 3 cut(s) 353, 761, 871
Bme18I GGWCC 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 208
BmgT120I GGNCC 2 cut(s) 61, 757
BmrFI CCNGG 3 cut(s) 353, 761, 871
BmsI GCATC 1 cut(s) 1048
BoxI GACNNNNGTC 1 cut(s) 288
BpiI GAAGAC 2 cut(s) 795, 1022
BpmI CTGGAG 1 cut(s) 150
Bpu10I CCTNAGC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 50
BsaJI CCNNGG 4 cut(s) 352, 567, 759, 760
Bsc4I CCNNNNNNNGG 4 cut(s) 573, 632, 703, 876
Bse1I ACTGG 4 cut(s) 133, 149, 311, 960
Bse21I CCTNAGG 1 cut(s) 420
Bse3DI GCAATG 2 cut(s) 271, 675
BseBI CCWGG 3 cut(s) 353, 761, 871
BseDI CCNNGG 4 cut(s) 352, 567, 759, 760
BseGI GGATG 4 cut(s) 156, 521, 755, 778
BseLI CCNNNNNNNGG 4 cut(s) 573, 632, 703, 876
BseMI GCAATG 2 cut(s) 271, 675
BseMII CTCAG 3 cut(s) 297, 692, 812
BseNI ACTGG 4 cut(s) 133, 149, 311, 960
BseRI GAGGAG 1 cut(s) 710
BseXI GCAGC 2 cut(s) 335, 913
BshFI GGCC 3 cut(s) 494, 758, 869
BsiHKCI CYCGRG 1 cut(s) 208
BsiSI CCGG 1 cut(s) 923
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 4 cut(s) 573, 632, 703, 876
BsmAI GTCTC 1 cut(s) 1075
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 3 cut(s) 494, 758, 869
BsoBI CYCGRG 1 cut(s) 208
Bsp143I GATC 8 cut(s) 4, 82, 433, 440, 629, 894, 931, 1095
BspACI CCGC 3 cut(s) 262, 755, 990
BspANI GGCC 3 cut(s) 494, 758, 869
BspCNI CTCAG 3 cut(s) 298, 691, 811
BspPI GGATC 3 cut(s) 12, 90, 448
BsrDI GCAATG 2 cut(s) 271, 675
BsrI ACTGG 4 cut(s) 133, 149, 311, 960
BssECI CCNNGG 4 cut(s) 352, 567, 759, 760
BssMI GATC 8 cut(s) 4, 82, 433, 440, 629, 894, 931, 1095
BssT1I CCWWGG 1 cut(s) 567
Bst2UI CCWGG 3 cut(s) 353, 761, 871
Bst4CI ACNGT 3 cut(s) 47, 817, 1085
BstC8I GCNNGC 1 cut(s) 666
BstDEI CTNAG 5 cut(s) 306, 399, 420, 678, 798
BstF5I GGATG 4 cut(s) 156, 521, 755, 778
BstHHI GCGC 1 cut(s) 711
BstKTI GATC 8 cut(s) 7, 85, 436, 443, 632, 897, 934, 1098
BstMAI GTCTC 1 cut(s) 1075
BstMBI GATC 8 cut(s) 4, 82, 433, 440, 629, 894, 931, 1095
BstMWI GCNNNNNNNGC 1 cut(s) 926
BstNI CCWGG 3 cut(s) 353, 761, 871
BstNSI RCATGY 1 cut(s) 1079
BstPAI GACNNNNGTC 1 cut(s) 288
BstSCI CCNGG 3 cut(s) 351, 759, 869
BstV1I GCAGC 2 cut(s) 335, 913
BstV2I GAAGAC 2 cut(s) 795, 1022
BstX2I RGATCY 3 cut(s) 440, 629, 1095
BstYI RGATCY 3 cut(s) 440, 629, 1095
Bsu36I CCTNAGG 1 cut(s) 420
BsuRI GGCC 3 cut(s) 494, 758, 869
BtsCI GGATG 4 cut(s) 156, 521, 755, 778
BtsI GCAGTG 1 cut(s) 991
BtsIMutI CAGTG 3 cut(s) 126, 967, 991
Cac8I GCNNGC 1 cut(s) 666
CfoI GCGC 1 cut(s) 711
Cfr13I GGNCC 2 cut(s) 61, 757
Csp6I GTAC 3 cut(s) 29, 499, 1006
CviAII CATG 7 cut(s) 58, 86, 288, 437, 641, 876, 1076
CviQI GTAC 3 cut(s) 29, 499, 1006
DdeI CTNAG 5 cut(s) 306, 399, 420, 678, 798
DpnI GATC 8 cut(s) 6, 84, 435, 442, 631, 896, 933, 1097
DpnII GATC 8 cut(s) 4, 82, 433, 440, 629, 894, 931, 1095
EaeI YGGCCR 1 cut(s) 492
EciI GGCGGA 1 cut(s) 1005
Eco130I CCWWGG 1 cut(s) 567
Eco32I GATATC 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 61
Eco57I CTGAAG 3 cut(s) 314, 719, 1034
Eco81I CCTNAGG 1 cut(s) 420
Eco88I CYCGRG 1 cut(s) 208
EcoRII CCWGG 3 cut(s) 351, 759, 869
EcoRV GATATC 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 567
EcoT22I ATGCAT 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 567
FaeI CATG 7 cut(s) 61, 89, 291, 440, 644, 879, 1079
FalI AAGNNNNNCTT 2 cut(s) 313, 345
FaqI GGGAC 1 cut(s) 155
FatI CATG 7 cut(s) 57, 85, 287, 436, 640, 875, 1075
FauNDI CATATG 2 cut(s) 271, 383
FbaI TGATCA 1 cut(s) 433
Fnu4HI GCNGC 3 cut(s) 349, 756, 927
FokI GGATG 4 cut(s) 143, 508, 762, 785
Fsp4HI GCNGC 3 cut(s) 349, 756, 927
FspBI CTAG 3 cut(s) 32, 506, 1099
GlaI GCGC 1 cut(s) 710
GluI GCNGC 3 cut(s) 349, 756, 927
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 3 cut(s) 494, 758, 869
HapII CCGG 1 cut(s) 923
HhaI GCGC 1 cut(s) 711
Hin1II CATG 7 cut(s) 61, 89, 291, 440, 644, 879, 1079
Hin6I GCGC 1 cut(s) 709
HinP1I GCGC 1 cut(s) 709
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 1 cut(s) 779
HinfI GANTC 1 cut(s) 682
HpaII CCGG 1 cut(s) 923
HphI GGTGA 4 cut(s) 605, 897, 903, 1052
Hpy166II GTNNAC 6 cut(s) 37, 126, 316, 341, 646, 1081
Hpy188I TCNGA 6 cut(s) 202, 294, 445, 681, 768, 894
Hpy188III TCNNGA 6 cut(s) 228, 257, 281, 359, 807, 1093
Hpy8I GTNNAC 6 cut(s) 37, 126, 316, 341, 646, 1081
HpyAV CCTTC 3 cut(s) 6, 918, 925
HpyCH4III ACNGT 3 cut(s) 47, 817, 1085
HpyCH4V TGCA 2 cut(s) 269, 387
HpyF10VI GCNNNNNNNGC 1 cut(s) 926
HpyF3I CTNAG 5 cut(s) 306, 399, 420, 678, 798
Hsp92II CATG 7 cut(s) 61, 89, 291, 440, 644, 879, 1079
HspAI GCGC 1 cut(s) 709
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 8 cut(s) 4, 82, 433, 440, 629, 894, 931, 1095
LmnI GCTCC 2 cut(s) 706, 925
Lsp1109I GCAGC 2 cut(s) 335, 913
LweI GCATC 1 cut(s) 1048
MaeI CTAG 3 cut(s) 32, 506, 1099
MaeIII GTNAC 2 cut(s) 394, 944
MalI GATC 8 cut(s) 6, 84, 435, 442, 631, 896, 933, 1097
MboI GATC 8 cut(s) 4, 82, 433, 440, 629, 894, 931, 1095
MboII GAAGA 6 cut(s) 92, 234, 321, 712, 795, 1027
MflI RGATCY 3 cut(s) 440, 629, 1095
MluCI AATT 3 cut(s) 190, 548, 1046
MnlI CCTC 7 cut(s) 74, 101, 565, 574, 731, 740, 1056
Mph1103I ATGCAT 1 cut(s) 271
MseI TTAA 1 cut(s) 812
MspI CCGG 1 cut(s) 923
MspR9I CCNGG 3 cut(s) 353, 761, 871
MvaI CCWGG 3 cut(s) 353, 761, 871
MwoI GCNNNNNNNGC 1 cut(s) 926
NdeI CATATG 2 cut(s) 271, 383
NdeII GATC 8 cut(s) 4, 82, 433, 440, 629, 894, 931, 1095
NlaIII CATG 7 cut(s) 61, 89, 291, 440, 644, 879, 1079
NmeAIII GCCGAG 1 cut(s) 520
NsiI ATGCAT 1 cut(s) 271
NspI RCATGY 1 cut(s) 1079
PasI CCCWGGG 1 cut(s) 760
PfeI GAWTC 1 cut(s) 682
PflMI CCANNNNNTGG 2 cut(s) 632, 876
PkrI GCNGC 3 cut(s) 350, 757, 928
PshAI GACNNNNGTC 1 cut(s) 288
Psp6I CCWGG 3 cut(s) 351, 759, 869
PspGI CCWGG 3 cut(s) 351, 759, 869
PspPI GGNCC 2 cut(s) 61, 757
PsuI RGATCY 3 cut(s) 440, 629, 1095
RsaI GTAC 3 cut(s) 30, 500, 1007
RsaNI GTAC 3 cut(s) 29, 499, 1006
SaqAI TTAA 1 cut(s) 812
SatI GCNGC 3 cut(s) 349, 756, 927
Sau3AI GATC 8 cut(s) 4, 82, 433, 440, 629, 894, 931, 1095
Sau96I GGNCC 2 cut(s) 61, 757
ScrFI CCNGG 3 cut(s) 353, 761, 871
SetI ASST 9 cut(s) 30, 66, 125, 153, 507, 699, 783, 910, 1014
SfaNI GCATC 1 cut(s) 1048
SinI GGWCC 1 cut(s) 61
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
SpeI ACTAGT 1 cut(s) 31
Sse9I AATT 3 cut(s) 190, 548, 1046
SsiI CCGC 3 cut(s) 262, 755, 990
SspMI CTAG 3 cut(s) 32, 506, 1099
StyD4I CCNGG 3 cut(s) 351, 759, 869
StyI CCWWGG 1 cut(s) 567
TaaI ACNGT 3 cut(s) 47, 817, 1085
TaqI TCGA 4 cut(s) 7, 153, 188, 1092
TasI AATT 3 cut(s) 190, 548, 1046
TatI WGTACW 1 cut(s) 498
TauI GCSGC 1 cut(s) 758
TfiI GAWTC 1 cut(s) 682
Tru1I TTAA 1 cut(s) 812
Tru9I TTAA 1 cut(s) 812
TscAI CASTG 3 cut(s) 133, 967, 991
TseI GCWGC 2 cut(s) 348, 926
TspDTI ATGAA 6 cut(s) 234, 238, 561, 629, 872, 1059
TspGWI ACGGA 1 cut(s) 514
TspRI CASTG 3 cut(s) 133, 967, 991
Van91I CCANNNNNTGG 2 cut(s) 632, 876
VpaK11BI GGWCC 1 cut(s) 61
XapI RAATTY 2 cut(s) 548, 1046
XceI RCATGY 1 cut(s) 1079
XcmI CCANNNNNNNNNTGG 2 cut(s) 359, 967
XspI CTAG 3 cut(s) 32, 506, 1099
Zsp2I ATGCAT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.