Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G66631 |
| fragaria_vesca | FvH4_1g14280 FvH4_2g07140 |
| malus_domestica | MD02G1156600.v1.1 MD15G1270900.v1.1 |
| prunus_persica | Prupe.7G147200_v2.0.a1 |
| pyrus_communis | pycom15g23480 |
| rosa_chinensis | RchiOBHm_Chr2g0102871 RchiOBHm_Chr2g0102951 |
| rosa_laevigata | RLG00000017190 |
| rosa_multiflora | Rmu_sc0000388.1_g000043 |
| rosa_roxburghii | Rroxscaffold_2G00140070 Rroxscaffold_2G00140200 |
| rosa_rugosa | Rorug02G0110600 |
| rosa_samantha | Rh2AG158900 Rh2BG165300 Rh2CG165500 Rh2DG164100 |
| rosa_wichuraiana | Rw2G012420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 700, 832 |
| AciI | CCGC | 9 cut(s) | 35, 68, 119, 143, 148, 376, 437, 700, 1395 |
| AcoI | YGGCCR | 1 cut(s) | 397 |
| AcsI | RAATTY | 4 cut(s) | 682, 724, 1312, 1318 |
| AcuI | CTGAAG | 1 cut(s) | 983 |
| AfaI | GTAC | 1 cut(s) | 1086 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 34, 658, 876, 1004, 1059 |
| AgsI | TTSAA | 8 cut(s) | 262, 809, 906, 1012, 1091, 1253, 1301, 1318 |
| AjiI | CACGTC | 1 cut(s) | 48 |
| AjnI | CCWGG | 2 cut(s) | 27, 778 |
| Alw21I | GWGCWC | 1 cut(s) | 1472 |
| Alw26I | GTCTC | 1 cut(s) | 941 |
| Ama87I | CYCGRG | 1 cut(s) | 616 |
| AoxI | GGCC | 2 cut(s) | 397, 994 |
| ApeKI | GCWGC | 8 cut(s) | 14, 245, 845, 956, 1277, 1324, 1334, 1391 |
| ApoI | RAATTY | 4 cut(s) | 682, 724, 1312, 1318 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 755 |
| AspLEI | GCGC | 3 cut(s) | 181, 832, 834 |
| AspS9I | GGNCC | 2 cut(s) | 25, 995 |
| AsuHPI | GGTGA | 4 cut(s) | 235, 295, 1226, 1477 |
| AvaI | CYCGRG | 1 cut(s) | 616 |
| AvaII | GGWCC | 1 cut(s) | 25 |
| BanII | GRGCYC | 2 cut(s) | 653, 1472 |
| BbsI | GAAGAC | 1 cut(s) | 1308 |
| Bbv12I | GWGCWC | 1 cut(s) | 1472 |
| BbvI | GCAGC | 7 cut(s) | 232, 832, 943, 1264, 1311, 1321, 1378 |
| BccI | CCATC | 4 cut(s) | 157, 244, 377, 874 |
| BceAI | ACGGC | 1 cut(s) | 883 |
| BciT130I | CCWGG | 2 cut(s) | 29, 780 |
| BclI | TGATCA | 1 cut(s) | 918 |
| BcoDI | GTCTC | 1 cut(s) | 941 |
| BfoI | RGCGCY | 1 cut(s) | 182 |
| BisI | GCNGC | 9 cut(s) | 15, 246, 846, 957, 1278, 1325, 1335, 1392, 1395 |
| BlpI | GCTNAGC | 1 cut(s) | 1513 |
| BlsI | GCNGC | 9 cut(s) | 16, 247, 847, 958, 1279, 1326, 1336, 1393, 1396 |
| Bme1390I | CCNGG | 2 cut(s) | 29, 780 |
| Bme18I | GGWCC | 1 cut(s) | 25 |
| BmeT110I | CYCGRG | 1 cut(s) | 616 |
| BmgBI | CACGTC | 1 cut(s) | 48 |
| BmgT120I | GGNCC | 2 cut(s) | 25, 995 |
| BmiI | GGNNCC | 2 cut(s) | 26, 650 |
| BmrFI | CCNGG | 2 cut(s) | 29, 780 |
| BmsI | GCATC | 4 cut(s) | 1008, 1134, 1156, 1216 |
| BpiI | GAAGAC | 1 cut(s) | 1308 |
| BpmI | CTGGAG | 2 cut(s) | 50, 1489 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1513 |
| BpuEI | CTTGAG | 3 cut(s) | 386, 1123, 1327 |
| BsaBI | GATNNNNATC | 1 cut(s) | 558 |
| BsaI | GGTCTC | 1 cut(s) | 941 |
| BsaJI | CCNNGG | 1 cut(s) | 605 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 34, 658, 876, 1004, 1059 |
| Bse1I | ACTGG | 1 cut(s) | 1506 |
| Bse3DI | GCAATG | 1 cut(s) | 1203 |
| Bse8I | GATNNNNATC | 1 cut(s) | 558 |
| BseBI | CCWGG | 2 cut(s) | 29, 780 |
| BseDI | CCNNGG | 1 cut(s) | 605 |
| BseGI | GGATG | 5 cut(s) | 168, 553, 819, 885, 1087 |
| BseJI | GATNNNNATC | 1 cut(s) | 558 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 34, 658, 876, 1004, 1059 |
| BseMI | GCAATG | 1 cut(s) | 1203 |
| BseMII | CTCAG | 1 cut(s) | 1527 |
| BseNI | ACTGG | 1 cut(s) | 1506 |
| BsePI | GCGCGC | 1 cut(s) | 830 |
| BseRI | GAGGAG | 4 cut(s) | 68, 464, 557, 689 |
| BseXI | GCAGC | 7 cut(s) | 232, 832, 943, 1264, 1311, 1321, 1378 |
| BseYI | CCCAGC | 2 cut(s) | 124, 566 |
| BsgI | GTGCAG | 2 cut(s) | 1202, 1263 |
| Bsh1236I | CGCG | 2 cut(s) | 700, 832 |
| BshFI | GGCC | 2 cut(s) | 399, 996 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1472 |
| BsiHKCI | CYCGRG | 1 cut(s) | 616 |
| BsiSI | CCGG | 1 cut(s) | 1328 |
| BslFI | GGGAC | 2 cut(s) | 38, 1101 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 34, 658, 876, 1004, 1059 |
| BsmAI | GTCTC | 1 cut(s) | 941 |
| BsmFI | GGGAC | 2 cut(s) | 38, 1101 |
| BsmI | GAATGC | 2 cut(s) | 432, 952 |
| BsnI | GGCC | 2 cut(s) | 399, 996 |
| Bso31I | GGTCTC | 1 cut(s) | 941 |
| BsoBI | CYCGRG | 1 cut(s) | 616 |
| Bsp1286I | GDGCHC | 2 cut(s) | 653, 1472 |
| Bsp143I | GATC | 5 cut(s) | 559, 620, 918, 1098, 1477 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1513 |
| BspACI | CCGC | 9 cut(s) | 35, 68, 119, 143, 148, 376, 437, 700, 1395 |
| BspANI | GGCC | 2 cut(s) | 399, 996 |
| BspCNI | CTCAG | 1 cut(s) | 1526 |
| BspFNI | CGCG | 2 cut(s) | 700, 832 |
| BspHI | TCATGA | 1 cut(s) | 105 |
| BspLI | GGNNCC | 2 cut(s) | 26, 650 |
| BspTNI | GGTCTC | 1 cut(s) | 941 |
| BsrDI | GCAATG | 1 cut(s) | 1203 |
| BsrI | ACTGG | 1 cut(s) | 1506 |
| BssECI | CCNNGG | 1 cut(s) | 605 |
| BssHII | GCGCGC | 1 cut(s) | 830 |
| BssMI | GATC | 5 cut(s) | 559, 620, 918, 1098, 1477 |
| BssT1I | CCWWGG | 1 cut(s) | 605 |
| Bst2UI | CCWGG | 2 cut(s) | 29, 780 |
| Bst4CI | ACNGT | 3 cut(s) | 205, 805, 1465 |
| Bst6I | CTCTTC | 2 cut(s) | 1086, 1352 |
| BstC8I | GCNNGC | 4 cut(s) | 8, 12, 325, 832 |
| BstDEI | CTNAG | 2 cut(s) | 719, 1513 |
| BstEII | GGTNACC | 1 cut(s) | 1214 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1002 |
| BstF5I | GGATG | 5 cut(s) | 168, 553, 819, 885, 1087 |
| BstFNI | CGCG | 2 cut(s) | 700, 832 |
| BstH2I | RGCGCY | 1 cut(s) | 182 |
| BstHHI | GCGC | 3 cut(s) | 181, 832, 834 |
| BstKTI | GATC | 5 cut(s) | 562, 623, 921, 1101, 1480 |
| BstMAI | GTCTC | 1 cut(s) | 941 |
| BstMBI | GATC | 5 cut(s) | 559, 620, 918, 1098, 1477 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 743, 956, 1283, 1292 |
| BstNI | CCWGG | 2 cut(s) | 29, 780 |
| BstNSI | RCATGY | 1 cut(s) | 845 |
| BstPI | GGTNACC | 1 cut(s) | 1214 |
| BstSCI | CCNGG | 2 cut(s) | 27, 778 |
| BstUI | CGCG | 2 cut(s) | 700, 832 |
| BstV1I | GCAGC | 7 cut(s) | 232, 832, 943, 1264, 1311, 1321, 1378 |
| BstV2I | GAAGAC | 1 cut(s) | 1308 |
| BsuRI | GGCC | 2 cut(s) | 399, 996 |
| BtgZI | GCGATG | 1 cut(s) | 263 |
| BtrI | CACGTC | 1 cut(s) | 48 |
| BtsCI | GGATG | 5 cut(s) | 168, 553, 819, 885, 1087 |
| BtsIMutI | CAGTG | 2 cut(s) | 623, 1157 |
| Cac8I | GCNNGC | 4 cut(s) | 8, 12, 325, 832 |
| CciI | TCATGA | 1 cut(s) | 105 |
| CfoI | GCGC | 3 cut(s) | 181, 832, 834 |
| Cfr13I | GGNCC | 2 cut(s) | 25, 995 |
| CseI | GACGC | 2 cut(s) | 962, 1340 |
| Csp6I | GTAC | 1 cut(s) | 1085 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1425, 1460 |
| CviAII | CATG | 3 cut(s) | 106, 791, 842 |
| CviQI | GTAC | 1 cut(s) | 1085 |
| DdeI | CTNAG | 2 cut(s) | 719, 1513 |
| DpnI | GATC | 5 cut(s) | 561, 622, 920, 1100, 1479 |
| DpnII | GATC | 5 cut(s) | 559, 620, 918, 1098, 1477 |
| DraI | TTTAAA | 2 cut(s) | 730, 1240 |
| EaeI | YGGCCR | 1 cut(s) | 397 |
| Eam1104I | CTCTTC | 2 cut(s) | 1086, 1352 |
| EarI | CTCTTC | 2 cut(s) | 1086, 1352 |
| Ecl136II | GAGCTC | 1 cut(s) | 1470 |
| Eco130I | CCWWGG | 1 cut(s) | 605 |
| Eco24I | GRGCYC | 2 cut(s) | 653, 1472 |
| Eco31I | GGTCTC | 1 cut(s) | 941 |
| Eco47I | GGWCC | 1 cut(s) | 25 |
| Eco53kI | GAGCTC | 1 cut(s) | 1470 |
| Eco57I | CTGAAG | 1 cut(s) | 983 |
| Eco88I | CYCGRG | 1 cut(s) | 616 |
| Eco91I | GGTNACC | 1 cut(s) | 1214 |
| EcoICRI | GAGCTC | 1 cut(s) | 1470 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1002 |
| EcoO109I | RGGNCCY | 1 cut(s) | 25 |
| EcoO65I | GGTNACC | 1 cut(s) | 1214 |
| EcoRII | CCWGG | 2 cut(s) | 27, 778 |
| EcoT14I | CCWWGG | 1 cut(s) | 605 |
| EcoT22I | ATGCAT | 2 cut(s) | 637, 1149 |
| EcoT38I | GRGCYC | 2 cut(s) | 653, 1472 |
| ErhI | CCWWGG | 1 cut(s) | 605 |
| FaeI | CATG | 3 cut(s) | 109, 794, 845 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 165, 197, 1335, 1367 |
| FaqI | GGGAC | 2 cut(s) | 38, 1101 |
| FatI | CATG | 3 cut(s) | 105, 790, 841 |
| FauI | CCCGC | 3 cut(s) | 141, 369, 430 |
| FauNDI | CATATG | 2 cut(s) | 219, 1457 |
| FbaI | TGATCA | 1 cut(s) | 918 |
| Fnu4HI | GCNGC | 9 cut(s) | 15, 246, 846, 957, 1278, 1325, 1335, 1392, 1395 |
| FokI | GGATG | 5 cut(s) | 175, 560, 826, 892, 1094 |
| FriOI | GRGCYC | 2 cut(s) | 653, 1472 |
| Fsp4HI | GCNGC | 9 cut(s) | 15, 246, 846, 957, 1278, 1325, 1335, 1392, 1395 |
| GlaI | GCGC | 3 cut(s) | 180, 831, 833 |
| GluI | GCNGC | 9 cut(s) | 15, 246, 846, 957, 1278, 1325, 1335, 1392, 1395 |
| GsaI | CCCAGC | 2 cut(s) | 128, 570 |
| GsuI | CTGGAG | 2 cut(s) | 50, 1489 |
| HaeII | RGCGCY | 1 cut(s) | 182 |
| HaeIII | GGCC | 2 cut(s) | 399, 996 |
| HapII | CCGG | 1 cut(s) | 1328 |
| HgaI | GACGC | 2 cut(s) | 962, 1340 |
| HhaI | GCGC | 3 cut(s) | 181, 832, 834 |
| Hin1II | CATG | 3 cut(s) | 109, 794, 845 |
| Hin6I | GCGC | 3 cut(s) | 179, 830, 832 |
| HinP1I | GCGC | 3 cut(s) | 179, 830, 832 |
| HinfI | GANTC | 5 cut(s) | 89, 715, 820, 1067, 1360 |
| HpaII | CCGG | 1 cut(s) | 1328 |
| HphI | GGTGA | 4 cut(s) | 235, 295, 1226, 1477 |
| Hpy166II | GTNNAC | 1 cut(s) | 693 |
| Hpy188I | TCNGA | 5 cut(s) | 45, 186, 963, 1017, 1072 |
| Hpy188III | TCNNGA | 4 cut(s) | 106, 940, 1102, 1126 |
| Hpy8I | GTNNAC | 1 cut(s) | 693 |
| HpyAV | CCTTC | 7 cut(s) | 124, 167, 565, 745, 958, 1363, 1367 |
| HpyCH4III | ACNGT | 3 cut(s) | 205, 805, 1465 |
| HpyCH4IV | ACGT | 1 cut(s) | 47 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 743, 956, 1283, 1292 |
| HpyF3I | CTNAG | 2 cut(s) | 719, 1513 |
| HpySE526I | ACGT | 1 cut(s) | 47 |
| Hsp92II | CATG | 3 cut(s) | 109, 794, 845 |
| HspAI | GCGC | 3 cut(s) | 179, 830, 832 |
| Ksp22I | TGATCA | 1 cut(s) | 918 |
| Kzo9I | GATC | 5 cut(s) | 559, 620, 918, 1098, 1477 |
| LmnI | GCTCC | 4 cut(s) | 121, 332, 648, 883 |
| Lsp1109I | GCAGC | 7 cut(s) | 232, 832, 943, 1264, 1311, 1321, 1378 |
| LweI | GCATC | 4 cut(s) | 1008, 1134, 1156, 1216 |
| MaeII | ACGT | 1 cut(s) | 47 |
| MaeIII | GTNAC | 2 cut(s) | 1214, 1451 |
| MalI | GATC | 5 cut(s) | 561, 622, 920, 1100, 1479 |
| MboI | GATC | 5 cut(s) | 559, 620, 918, 1098, 1477 |
| MboII | GAAGA | 6 cut(s) | 32, 955, 1103, 1313, 1369, 1424 |
| MhlI | GDGCHC | 2 cut(s) | 653, 1472 |
| MluCI | AATT | 8 cut(s) | 187, 492, 682, 724, 1176, 1248, 1312, 1318 |
| MlyI | GAGTC | 2 cut(s) | 814, 1369 |
| MmeI | TCCRAC | 4 cut(s) | 219, 310, 399, 626 |
| Mph1103I | ATGCAT | 2 cut(s) | 637, 1149 |
| MroXI | GAANNNNTTC | 1 cut(s) | 755 |
| MseI | TTAA | 4 cut(s) | 354, 599, 729, 1239 |
| MslI | CAYNNNNRTG | 1 cut(s) | 840 |
| MspA1I | CMGCKG | 3 cut(s) | 737, 1397, 1517 |
| MspI | CCGG | 1 cut(s) | 1328 |
| MspR9I | CCNGG | 2 cut(s) | 29, 780 |
| Mva1269I | GAATGC | 2 cut(s) | 432, 952 |
| MvaI | CCWGG | 2 cut(s) | 29, 780 |
| MvnI | CGCG | 2 cut(s) | 700, 832 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 743, 956, 1283, 1292 |
| NdeI | CATATG | 2 cut(s) | 219, 1457 |
| NdeII | GATC | 5 cut(s) | 559, 620, 918, 1098, 1477 |
| NlaIII | CATG | 3 cut(s) | 109, 794, 845 |
| NlaIV | GGNNCC | 2 cut(s) | 26, 650 |
| NmeAIII | GCCGAG | 1 cut(s) | 425 |
| NmuCI | GTSAC | 2 cut(s) | 1214, 1451 |
| NsiI | ATGCAT | 2 cut(s) | 637, 1149 |
| NspI | RCATGY | 1 cut(s) | 845 |
| PagI | TCATGA | 1 cut(s) | 105 |
| PauI | GCGCGC | 1 cut(s) | 830 |
| PctI | GAATGC | 2 cut(s) | 432, 952 |
| PdmI | GAANNNNTTC | 1 cut(s) | 755 |
| PfeI | GAWTC | 3 cut(s) | 89, 715, 1067 |
| PkrI | GCNGC | 9 cut(s) | 16, 247, 847, 958, 1279, 1326, 1336, 1393, 1396 |
| PleI | GAGTC | 2 cut(s) | 814, 1368 |
| PpsI | GAGTC | 2 cut(s) | 814, 1368 |
| PpuMI | RGGWCCY | 1 cut(s) | 25 |
| Psp124BI | GAGCTC | 1 cut(s) | 1472 |
| Psp5II | RGGWCCY | 1 cut(s) | 25 |
| Psp6I | CCWGG | 2 cut(s) | 27, 778 |
| PspEI | GGTNACC | 1 cut(s) | 1214 |
| PspFI | CCCAGC | 2 cut(s) | 124, 566 |
| PspGI | CCWGG | 2 cut(s) | 27, 778 |
| PspN4I | GGNNCC | 2 cut(s) | 26, 650 |
| PspPI | GGNCC | 2 cut(s) | 25, 995 |
| PspPPI | RGGWCCY | 1 cut(s) | 25 |
| PteI | GCGCGC | 1 cut(s) | 830 |
| PvuII | CAGCTG | 2 cut(s) | 737, 1517 |
| RsaI | GTAC | 1 cut(s) | 1086 |
| RsaNI | GTAC | 1 cut(s) | 1085 |
| RseI | CAYNNNNRTG | 1 cut(s) | 840 |
| SacI | GAGCTC | 1 cut(s) | 1472 |
| SaqAI | TTAA | 4 cut(s) | 354, 599, 729, 1239 |
| SatI | GCNGC | 9 cut(s) | 15, 246, 846, 957, 1278, 1325, 1335, 1392, 1395 |
| Sau3AI | GATC | 5 cut(s) | 559, 620, 918, 1098, 1477 |
| Sau96I | GGNCC | 2 cut(s) | 25, 995 |
| SchI | GAGTC | 2 cut(s) | 814, 1369 |
| ScrFI | CCNGG | 2 cut(s) | 29, 780 |
| SduI | GDGCHC | 2 cut(s) | 653, 1472 |
| SfaNI | GCATC | 4 cut(s) | 1008, 1134, 1156, 1216 |
| SinI | GGWCC | 1 cut(s) | 25 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 840 |
| SmlI | CTYRAG | 3 cut(s) | 365, 1102, 1306 |
| SmoI | CTYRAG | 3 cut(s) | 365, 1102, 1306 |
| Sse9I | AATT | 8 cut(s) | 187, 492, 682, 724, 1176, 1248, 1312, 1318 |
| SsiI | CCGC | 9 cut(s) | 35, 68, 119, 143, 148, 376, 437, 700, 1395 |
| SstI | GAGCTC | 1 cut(s) | 1472 |
| StyD4I | CCNGG | 2 cut(s) | 27, 778 |
| StyI | CCWWGG | 1 cut(s) | 605 |
| TaaI | ACNGT | 3 cut(s) | 205, 805, 1465 |
| TaiI | ACGT | 1 cut(s) | 50 |
| TaqI | TCGA | 1 cut(s) | 941 |
| TasI | AATT | 8 cut(s) | 187, 492, 682, 724, 1176, 1248, 1312, 1318 |
| TatI | WGTACW | 1 cut(s) | 1084 |
| TauI | GCSGC | 1 cut(s) | 1397 |
| TfiI | GAWTC | 3 cut(s) | 89, 715, 1067 |
| Tru1I | TTAA | 4 cut(s) | 354, 599, 729, 1239 |
| Tru9I | TTAA | 4 cut(s) | 354, 599, 729, 1239 |
| TscAI | CASTG | 2 cut(s) | 630, 1164 |
| TseFI | GTSAC | 2 cut(s) | 1214, 1451 |
| TseI | GCWGC | 8 cut(s) | 14, 245, 845, 956, 1277, 1324, 1334, 1391 |
| Tsp45I | GTSAC | 2 cut(s) | 1214, 1451 |
| TspDTI | ATGAA | 1 cut(s) | 1020 |
| TspGWI | ACGGA | 1 cut(s) | 304 |
| TspRI | CASTG | 2 cut(s) | 630, 1164 |
| VpaK11BI | GGWCC | 1 cut(s) | 25 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1002 |
| XapI | RAATTY | 4 cut(s) | 682, 724, 1312, 1318 |
| XceI | RCATGY | 1 cut(s) | 845 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 877, 1133 |
| XmnI | GAANNNNTTC | 1 cut(s) | 755 |
| Zsp2I | ATGCAT | 2 cut(s) | 637, 1149 |