FvH4_1g14280

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
7918117 .. 7919643
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14280.t1

Sequence Viewer

Length: 1527 bp
ATGAGCTGGCAAGCTGCTGTTGGGGACCTGGAGGCGGTTCTTCGGACGTGGGAGGAGTATAGAAGTGCGGAGAAGCGTGTGTGTGCTGAATCTTACAATGTTGTCATGAGGGTTTATGCGGAGCTGGGGAAGGATTGTAAGGCGGTGCGGGTTTTTTATAGGATGGTTGAGGAAGGGGCGCTTCCGAATTGCAGGACTTATACGGTTATGATTGAGCATATGGTGAAGTGTGGGAAGTTGGAGGCTGCGATGGAGGTGTTCAAGGTGTTGCCTTTTATGAGGGTGAAACGGAGTTTGAGGCAGTATCAGGTTTTGGTGGAGGCGTGCGTTGGAGCGAAGCAGTTTGAGGGGGTTAAGGCTTTACTTGAGGAAATGCGGGTTGATGGGATATTGCTTGGCCGAGCTATGCTTTTGTCGTTGGAACGAATGCGAGAGGCGGGGTTTGTTGAGGAGAGTGATGAGTTTTTGAGGGAAATGTTGCCTAATGAGGCAATTAGTAGTATAGGGTATTGTGATGATTGTAGTGATGATGATGATGATGAGGAGGATGTTGATGATGATCGTGCTGGGAAGGGTAAAGAGGGTAGTGGGGTTCAGTTAAAACCTTGGTTAGACCCGAGATCACTGACAAATGCATTACAAAGTTGGAGCCCCAATGAGGTATCAGCATTAGAGGAGGCAAATTTTCTGTGGACTACGCGGTTAGTATGCAAGATTCTTAGGAATTTTAAATCAGCTGAAAGAGCTTGGAAGGTTTTCTGTTGGGTTGCTTGTCAGCCAGGTTTTACCCATGATATATACACAGTTCAAAGGATGATGACTCTTTTAGCGCGCCATAGACATGCTGCATTGGTTGATAAACTTTTGTCCAAAGTAAGGATGGAGCAAATGAGATTGCCGTTTTCAACAATCAGGCTGATCATTGACTTCTATGGTCTCTCGAAGAATGCTGACGCTGCTCTGAAGGTCTTTCACAATGATAGAAACCTGTGTGGCCCTATATCAGGTTTCAATCTGATGCTTTTGTATTCATCTCTTTTACGAACATTGACCAAATGCAGGAGGGATTCAGATGTAATGGATGTACTTGAAGAGATGATCTTGAGTGGGATTTGTCCCAATATCCAGACATTTTCTGGGTTGATGCATCATTTTGCACTGAATGATGACATCAAAATTGTGCAGAAACTATTTGCAATGGTTAGGCAGAGTGGTGACCAGCCAGATGCTTATATGTTTAAAGTGCTAATTCAAGCATATTGCAAGTGTGAGAGAGCTGCACTTGCGTATAGAGCTTTTGAAGACTTGAGGAATTTGAATTTGCTGCCGGACGCTGCCACAAAAGAGTTGCTTGTGAAGAGTCTTTGGAAGGAAGGCAAGTGGAGAGAGGCTGCCGCTGTAAAAGAGAGTTGCAAAGAAACAAATGATGTTCTTCCACTCACTTTGCGTGGTCACATATGGACGGTGAGCTCTACTGATCTCTCAAAGGTTTTTTCTATTTACTCCAGTAGCTCAGCTGGTGAATAG

Protein Analysis

509

Amino Acids

57.91

Weight (kDa)

6.04

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 7 - 140 2e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 30 - 72 4.8e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011923)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 700, 832
AciI CCGC 9 cut(s) 35, 68, 119, 143, 148, 376, 437, 700, 1395
AcoI YGGCCR 1 cut(s) 397
AcsI RAATTY 4 cut(s) 682, 724, 1312, 1318
AcuI CTGAAG 1 cut(s) 983
AfaI GTAC 1 cut(s) 1086
AfiI CCNNNNNNNGG 5 cut(s) 34, 658, 876, 1004, 1059
AgsI TTSAA 8 cut(s) 262, 809, 906, 1012, 1091, 1253, 1301, 1318
AjiI CACGTC 1 cut(s) 48
AjnI CCWGG 2 cut(s) 27, 778
Alw21I GWGCWC 1 cut(s) 1472
Alw26I GTCTC 1 cut(s) 941
Ama87I CYCGRG 1 cut(s) 616
AoxI GGCC 2 cut(s) 397, 994
ApeKI GCWGC 8 cut(s) 14, 245, 845, 956, 1277, 1324, 1334, 1391
ApoI RAATTY 4 cut(s) 682, 724, 1312, 1318
Asp700I GAANNNNTTC 1 cut(s) 755
AspLEI GCGC 3 cut(s) 181, 832, 834
AspS9I GGNCC 2 cut(s) 25, 995
AsuHPI GGTGA 4 cut(s) 235, 295, 1226, 1477
AvaI CYCGRG 1 cut(s) 616
AvaII GGWCC 1 cut(s) 25
BanII GRGCYC 2 cut(s) 653, 1472
BbsI GAAGAC 1 cut(s) 1308
Bbv12I GWGCWC 1 cut(s) 1472
BbvI GCAGC 7 cut(s) 232, 832, 943, 1264, 1311, 1321, 1378
BccI CCATC 4 cut(s) 157, 244, 377, 874
BceAI ACGGC 1 cut(s) 883
BciT130I CCWGG 2 cut(s) 29, 780
BclI TGATCA 1 cut(s) 918
BcoDI GTCTC 1 cut(s) 941
BfoI RGCGCY 1 cut(s) 182
BisI GCNGC 9 cut(s) 15, 246, 846, 957, 1278, 1325, 1335, 1392, 1395
BlpI GCTNAGC 1 cut(s) 1513
BlsI GCNGC 9 cut(s) 16, 247, 847, 958, 1279, 1326, 1336, 1393, 1396
Bme1390I CCNGG 2 cut(s) 29, 780
Bme18I GGWCC 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 616
BmgBI CACGTC 1 cut(s) 48
BmgT120I GGNCC 2 cut(s) 25, 995
BmiI GGNNCC 2 cut(s) 26, 650
BmrFI CCNGG 2 cut(s) 29, 780
BmsI GCATC 4 cut(s) 1008, 1134, 1156, 1216
BpiI GAAGAC 1 cut(s) 1308
BpmI CTGGAG 2 cut(s) 50, 1489
Bpu1102I GCTNAGC 1 cut(s) 1513
BpuEI CTTGAG 3 cut(s) 386, 1123, 1327
BsaBI GATNNNNATC 1 cut(s) 558
BsaI GGTCTC 1 cut(s) 941
BsaJI CCNNGG 1 cut(s) 605
Bsc4I CCNNNNNNNGG 5 cut(s) 34, 658, 876, 1004, 1059
Bse1I ACTGG 1 cut(s) 1506
Bse3DI GCAATG 1 cut(s) 1203
Bse8I GATNNNNATC 1 cut(s) 558
BseBI CCWGG 2 cut(s) 29, 780
BseDI CCNNGG 1 cut(s) 605
BseGI GGATG 5 cut(s) 168, 553, 819, 885, 1087
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 5 cut(s) 34, 658, 876, 1004, 1059
BseMI GCAATG 1 cut(s) 1203
BseMII CTCAG 1 cut(s) 1527
BseNI ACTGG 1 cut(s) 1506
BsePI GCGCGC 1 cut(s) 830
BseRI GAGGAG 4 cut(s) 68, 464, 557, 689
BseXI GCAGC 7 cut(s) 232, 832, 943, 1264, 1311, 1321, 1378
BseYI CCCAGC 2 cut(s) 124, 566
BsgI GTGCAG 2 cut(s) 1202, 1263
Bsh1236I CGCG 2 cut(s) 700, 832
BshFI GGCC 2 cut(s) 399, 996
BsiHKAI GWGCWC 1 cut(s) 1472
BsiHKCI CYCGRG 1 cut(s) 616
BsiSI CCGG 1 cut(s) 1328
BslFI GGGAC 2 cut(s) 38, 1101
BslI CCNNNNNNNGG 5 cut(s) 34, 658, 876, 1004, 1059
BsmAI GTCTC 1 cut(s) 941
BsmFI GGGAC 2 cut(s) 38, 1101
BsmI GAATGC 2 cut(s) 432, 952
BsnI GGCC 2 cut(s) 399, 996
Bso31I GGTCTC 1 cut(s) 941
BsoBI CYCGRG 1 cut(s) 616
Bsp1286I GDGCHC 2 cut(s) 653, 1472
Bsp143I GATC 5 cut(s) 559, 620, 918, 1098, 1477
Bsp1720I GCTNAGC 1 cut(s) 1513
BspACI CCGC 9 cut(s) 35, 68, 119, 143, 148, 376, 437, 700, 1395
BspANI GGCC 2 cut(s) 399, 996
BspCNI CTCAG 1 cut(s) 1526
BspFNI CGCG 2 cut(s) 700, 832
BspHI TCATGA 1 cut(s) 105
BspLI GGNNCC 2 cut(s) 26, 650
BspTNI GGTCTC 1 cut(s) 941
BsrDI GCAATG 1 cut(s) 1203
BsrI ACTGG 1 cut(s) 1506
BssECI CCNNGG 1 cut(s) 605
BssHII GCGCGC 1 cut(s) 830
BssMI GATC 5 cut(s) 559, 620, 918, 1098, 1477
BssT1I CCWWGG 1 cut(s) 605
Bst2UI CCWGG 2 cut(s) 29, 780
Bst4CI ACNGT 3 cut(s) 205, 805, 1465
Bst6I CTCTTC 2 cut(s) 1086, 1352
BstC8I GCNNGC 4 cut(s) 8, 12, 325, 832
BstDEI CTNAG 2 cut(s) 719, 1513
BstEII GGTNACC 1 cut(s) 1214
BstENI CCTNNNNNAGG 1 cut(s) 1002
BstF5I GGATG 5 cut(s) 168, 553, 819, 885, 1087
BstFNI CGCG 2 cut(s) 700, 832
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 3 cut(s) 181, 832, 834
BstKTI GATC 5 cut(s) 562, 623, 921, 1101, 1480
BstMAI GTCTC 1 cut(s) 941
BstMBI GATC 5 cut(s) 559, 620, 918, 1098, 1477
BstMWI GCNNNNNNNGC 4 cut(s) 743, 956, 1283, 1292
BstNI CCWGG 2 cut(s) 29, 780
BstNSI RCATGY 1 cut(s) 845
BstPI GGTNACC 1 cut(s) 1214
BstSCI CCNGG 2 cut(s) 27, 778
BstUI CGCG 2 cut(s) 700, 832
BstV1I GCAGC 7 cut(s) 232, 832, 943, 1264, 1311, 1321, 1378
BstV2I GAAGAC 1 cut(s) 1308
BsuRI GGCC 2 cut(s) 399, 996
BtgZI GCGATG 1 cut(s) 263
BtrI CACGTC 1 cut(s) 48
BtsCI GGATG 5 cut(s) 168, 553, 819, 885, 1087
BtsIMutI CAGTG 2 cut(s) 623, 1157
Cac8I GCNNGC 4 cut(s) 8, 12, 325, 832
CciI TCATGA 1 cut(s) 105
CfoI GCGC 3 cut(s) 181, 832, 834
Cfr13I GGNCC 2 cut(s) 25, 995
CseI GACGC 2 cut(s) 962, 1340
Csp6I GTAC 1 cut(s) 1085
CspCI CAANNNNNGTGG 2 cut(s) 1425, 1460
CviAII CATG 3 cut(s) 106, 791, 842
CviQI GTAC 1 cut(s) 1085
DdeI CTNAG 2 cut(s) 719, 1513
DpnI GATC 5 cut(s) 561, 622, 920, 1100, 1479
DpnII GATC 5 cut(s) 559, 620, 918, 1098, 1477
DraI TTTAAA 2 cut(s) 730, 1240
EaeI YGGCCR 1 cut(s) 397
Eam1104I CTCTTC 2 cut(s) 1086, 1352
EarI CTCTTC 2 cut(s) 1086, 1352
Ecl136II GAGCTC 1 cut(s) 1470
Eco130I CCWWGG 1 cut(s) 605
Eco24I GRGCYC 2 cut(s) 653, 1472
Eco31I GGTCTC 1 cut(s) 941
Eco47I GGWCC 1 cut(s) 25
Eco53kI GAGCTC 1 cut(s) 1470
Eco57I CTGAAG 1 cut(s) 983
Eco88I CYCGRG 1 cut(s) 616
Eco91I GGTNACC 1 cut(s) 1214
EcoICRI GAGCTC 1 cut(s) 1470
EcoNI CCTNNNNNAGG 1 cut(s) 1002
EcoO109I RGGNCCY 1 cut(s) 25
EcoO65I GGTNACC 1 cut(s) 1214
EcoRII CCWGG 2 cut(s) 27, 778
EcoT14I CCWWGG 1 cut(s) 605
EcoT22I ATGCAT 2 cut(s) 637, 1149
EcoT38I GRGCYC 2 cut(s) 653, 1472
ErhI CCWWGG 1 cut(s) 605
FaeI CATG 3 cut(s) 109, 794, 845
FalI AAGNNNNNCTT 4 cut(s) 165, 197, 1335, 1367
FaqI GGGAC 2 cut(s) 38, 1101
FatI CATG 3 cut(s) 105, 790, 841
FauI CCCGC 3 cut(s) 141, 369, 430
FauNDI CATATG 2 cut(s) 219, 1457
FbaI TGATCA 1 cut(s) 918
Fnu4HI GCNGC 9 cut(s) 15, 246, 846, 957, 1278, 1325, 1335, 1392, 1395
FokI GGATG 5 cut(s) 175, 560, 826, 892, 1094
FriOI GRGCYC 2 cut(s) 653, 1472
Fsp4HI GCNGC 9 cut(s) 15, 246, 846, 957, 1278, 1325, 1335, 1392, 1395
GlaI GCGC 3 cut(s) 180, 831, 833
GluI GCNGC 9 cut(s) 15, 246, 846, 957, 1278, 1325, 1335, 1392, 1395
GsaI CCCAGC 2 cut(s) 128, 570
GsuI CTGGAG 2 cut(s) 50, 1489
HaeII RGCGCY 1 cut(s) 182
HaeIII GGCC 2 cut(s) 399, 996
HapII CCGG 1 cut(s) 1328
HgaI GACGC 2 cut(s) 962, 1340
HhaI GCGC 3 cut(s) 181, 832, 834
Hin1II CATG 3 cut(s) 109, 794, 845
Hin6I GCGC 3 cut(s) 179, 830, 832
HinP1I GCGC 3 cut(s) 179, 830, 832
HinfI GANTC 5 cut(s) 89, 715, 820, 1067, 1360
HpaII CCGG 1 cut(s) 1328
HphI GGTGA 4 cut(s) 235, 295, 1226, 1477
Hpy166II GTNNAC 1 cut(s) 693
Hpy188I TCNGA 5 cut(s) 45, 186, 963, 1017, 1072
Hpy188III TCNNGA 4 cut(s) 106, 940, 1102, 1126
Hpy8I GTNNAC 1 cut(s) 693
HpyAV CCTTC 7 cut(s) 124, 167, 565, 745, 958, 1363, 1367
HpyCH4III ACNGT 3 cut(s) 205, 805, 1465
HpyCH4IV ACGT 1 cut(s) 47
HpyF10VI GCNNNNNNNGC 4 cut(s) 743, 956, 1283, 1292
HpyF3I CTNAG 2 cut(s) 719, 1513
HpySE526I ACGT 1 cut(s) 47
Hsp92II CATG 3 cut(s) 109, 794, 845
HspAI GCGC 3 cut(s) 179, 830, 832
Ksp22I TGATCA 1 cut(s) 918
Kzo9I GATC 5 cut(s) 559, 620, 918, 1098, 1477
LmnI GCTCC 4 cut(s) 121, 332, 648, 883
Lsp1109I GCAGC 7 cut(s) 232, 832, 943, 1264, 1311, 1321, 1378
LweI GCATC 4 cut(s) 1008, 1134, 1156, 1216
MaeII ACGT 1 cut(s) 47
MaeIII GTNAC 2 cut(s) 1214, 1451
MalI GATC 5 cut(s) 561, 622, 920, 1100, 1479
MboI GATC 5 cut(s) 559, 620, 918, 1098, 1477
MboII GAAGA 6 cut(s) 32, 955, 1103, 1313, 1369, 1424
MhlI GDGCHC 2 cut(s) 653, 1472
MluCI AATT 8 cut(s) 187, 492, 682, 724, 1176, 1248, 1312, 1318
MlyI GAGTC 2 cut(s) 814, 1369
MmeI TCCRAC 4 cut(s) 219, 310, 399, 626
Mph1103I ATGCAT 2 cut(s) 637, 1149
MroXI GAANNNNTTC 1 cut(s) 755
MseI TTAA 4 cut(s) 354, 599, 729, 1239
MslI CAYNNNNRTG 1 cut(s) 840
MspA1I CMGCKG 3 cut(s) 737, 1397, 1517
MspI CCGG 1 cut(s) 1328
MspR9I CCNGG 2 cut(s) 29, 780
Mva1269I GAATGC 2 cut(s) 432, 952
MvaI CCWGG 2 cut(s) 29, 780
MvnI CGCG 2 cut(s) 700, 832
MwoI GCNNNNNNNGC 4 cut(s) 743, 956, 1283, 1292
NdeI CATATG 2 cut(s) 219, 1457
NdeII GATC 5 cut(s) 559, 620, 918, 1098, 1477
NlaIII CATG 3 cut(s) 109, 794, 845
NlaIV GGNNCC 2 cut(s) 26, 650
NmeAIII GCCGAG 1 cut(s) 425
NmuCI GTSAC 2 cut(s) 1214, 1451
NsiI ATGCAT 2 cut(s) 637, 1149
NspI RCATGY 1 cut(s) 845
PagI TCATGA 1 cut(s) 105
PauI GCGCGC 1 cut(s) 830
PctI GAATGC 2 cut(s) 432, 952
PdmI GAANNNNTTC 1 cut(s) 755
PfeI GAWTC 3 cut(s) 89, 715, 1067
PkrI GCNGC 9 cut(s) 16, 247, 847, 958, 1279, 1326, 1336, 1393, 1396
PleI GAGTC 2 cut(s) 814, 1368
PpsI GAGTC 2 cut(s) 814, 1368
PpuMI RGGWCCY 1 cut(s) 25
Psp124BI GAGCTC 1 cut(s) 1472
Psp5II RGGWCCY 1 cut(s) 25
Psp6I CCWGG 2 cut(s) 27, 778
PspEI GGTNACC 1 cut(s) 1214
PspFI CCCAGC 2 cut(s) 124, 566
PspGI CCWGG 2 cut(s) 27, 778
PspN4I GGNNCC 2 cut(s) 26, 650
PspPI GGNCC 2 cut(s) 25, 995
PspPPI RGGWCCY 1 cut(s) 25
PteI GCGCGC 1 cut(s) 830
PvuII CAGCTG 2 cut(s) 737, 1517
RsaI GTAC 1 cut(s) 1086
RsaNI GTAC 1 cut(s) 1085
RseI CAYNNNNRTG 1 cut(s) 840
SacI GAGCTC 1 cut(s) 1472
SaqAI TTAA 4 cut(s) 354, 599, 729, 1239
SatI GCNGC 9 cut(s) 15, 246, 846, 957, 1278, 1325, 1335, 1392, 1395
Sau3AI GATC 5 cut(s) 559, 620, 918, 1098, 1477
Sau96I GGNCC 2 cut(s) 25, 995
SchI GAGTC 2 cut(s) 814, 1369
ScrFI CCNGG 2 cut(s) 29, 780
SduI GDGCHC 2 cut(s) 653, 1472
SfaNI GCATC 4 cut(s) 1008, 1134, 1156, 1216
SinI GGWCC 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 840
SmlI CTYRAG 3 cut(s) 365, 1102, 1306
SmoI CTYRAG 3 cut(s) 365, 1102, 1306
Sse9I AATT 8 cut(s) 187, 492, 682, 724, 1176, 1248, 1312, 1318
SsiI CCGC 9 cut(s) 35, 68, 119, 143, 148, 376, 437, 700, 1395
SstI GAGCTC 1 cut(s) 1472
StyD4I CCNGG 2 cut(s) 27, 778
StyI CCWWGG 1 cut(s) 605
TaaI ACNGT 3 cut(s) 205, 805, 1465
TaiI ACGT 1 cut(s) 50
TaqI TCGA 1 cut(s) 941
TasI AATT 8 cut(s) 187, 492, 682, 724, 1176, 1248, 1312, 1318
TatI WGTACW 1 cut(s) 1084
TauI GCSGC 1 cut(s) 1397
TfiI GAWTC 3 cut(s) 89, 715, 1067
Tru1I TTAA 4 cut(s) 354, 599, 729, 1239
Tru9I TTAA 4 cut(s) 354, 599, 729, 1239
TscAI CASTG 2 cut(s) 630, 1164
TseFI GTSAC 2 cut(s) 1214, 1451
TseI GCWGC 8 cut(s) 14, 245, 845, 956, 1277, 1324, 1334, 1391
Tsp45I GTSAC 2 cut(s) 1214, 1451
TspDTI ATGAA 1 cut(s) 1020
TspGWI ACGGA 1 cut(s) 304
TspRI CASTG 2 cut(s) 630, 1164
VpaK11BI GGWCC 1 cut(s) 25
XagI CCTNNNNNAGG 1 cut(s) 1002
XapI RAATTY 4 cut(s) 682, 724, 1312, 1318
XceI RCATGY 1 cut(s) 845
XcmI CCANNNNNNNNNTGG 2 cut(s) 877, 1133
XmnI GAANNNNTTC 1 cut(s) 755
Zsp2I ATGCAT 2 cut(s) 637, 1149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.