Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0011923

Physical Location & Seq

Genomic Coordinates Reverse (-)

13024357 .. 13025634

Gene Structure 1278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1156600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCGTATTTTTGCCCAAATGAGGAAAGATTCGGAGGCGGGGAGGGATTTTAGTATGATGATTGAAGAAGGGGCATCTGCAATGGAGGTGTTTAATGTGCTTCCTTTGATGAGGGCGAATCGAACTTTAAACCAGTTTTCAGTTTTGGTAGAGGCATGTGTTGGTGTCGAACAGTTTGACGAGGTTAAGAATTTACTTGATGAAATTCGGGTTGATGGGATATTGCCGGGTCACGATATGCTTTTGTCTTTGGAACGGATTCAAAAAGCAGGGTTTGTACATGAGACTGATGAGTTTCTAAGAGAAATGCTGCCCAATGAGGGGACCAAGAGCATATCAATAATAAGCGGTGATGATGATGAGGATATTGGTGATGATACATTTTCAGGGTTGATACATCATTTTGCACTAAACGCGGACATCAAAACTGTGCAGAAATTCTTCACAATGGTTAGGCAGAGTGGAGTCCAGCCAGATGTTTATATGTTTAAAGTCCTGATCCAAGCATATTGCAAATGTGGGAGAGCAGCTCTTGGATTACGGAAGAGAGTTGTGAGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

188

Amino Acids

21.16

Weight (kDa)

5.28

Isoelectric Point (pI)

27.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011923)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66631
fragaria_vesca	FvH4_1g14280 FvH4_2g07140
malus_domestica	MD02G1156600.v1.1 MD15G1270900.v1.1
prunus_persica	Prupe.7G147200_v2.0.a1
pyrus_communis	pycom15g23480
rosa_chinensis	RchiOBHm_Chr2g0102871 RchiOBHm_Chr2g0102951
rosa_laevigata	RLG00000017190
rosa_multiflora	Rmu_sc0000388.1_g000043
rosa_roxburghii	Rroxscaffold_2G00140070 Rroxscaffold_2G00140200
rosa_rugosa	Rorug02G0110600
rosa_samantha	Rh2AG158900 Rh2BG165300 Rh2CG165500 Rh2DG164100
rosa_wichuraiana	Rw2G012420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	416
AciI	CCGC	3 cut(s)	38, 348, 416
AclWI	GGATC	1 cut(s)	493
AcsI	RAATTY	3 cut(s)	190, 204, 437
AfaI	GTAC	1 cut(s)	279
AfiI	CCNNNNNNNGG	3 cut(s)	21, 320, 321
AgsI	TTSAA	2 cut(s)	65, 263
AluBI	AGCT	1 cut(s)	530
AluI	AGCT	1 cut(s)	530
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	1 cut(s)	493
ApeKI	GCWGC	2 cut(s)	310, 527
ApoI	RAATTY	3 cut(s)	190, 204, 437
Asp700I	GAANNNNTTC	2 cut(s)	258, 440
AspS9I	GGNCC	1 cut(s)	324
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	2 cut(s)	362, 383
AvaII	GGWCC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	297, 539
BccI	CCATC	1 cut(s)	209
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	278
BisI	GCNGC	2 cut(s)	311, 528
BlsI	GCNGC	2 cut(s)	312, 529
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	324
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	83
BplI	GAGNNNNNCTC	2 cut(s)	514, 546
BpuMI	CCSGG	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 320, 321
Bse1I	ACTGG	1 cut(s)	133
Bse3DI	GCAATG	1 cut(s)	87
BseLI	CCNNNNNNNGG	3 cut(s)	21, 320, 321
BseMI	GCAATG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	133
BseXI	GCAGC	2 cut(s)	297, 539
BsgI	GTGCAG	1 cut(s)	452
Bsh1236I	CGCG	1 cut(s)	416
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	3 cut(s)	21, 320, 321
BsmAI	GTCTC	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	337
Bsp1407I	TGTACA	1 cut(s)	277
Bsp143I	GATC	1 cut(s)	498
BspACI	CCGC	3 cut(s)	38, 348, 416
BspFNI	CGCG	1 cut(s)	416
BspLI	GGNNCC	1 cut(s)	325
BspPI	GGATC	1 cut(s)	493
BsrDI	GCAATG	1 cut(s)	87
BsrGI	TGTACA	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	498
Bst4CI	ACNGT	2 cut(s)	174, 430
Bst6I	CTCTTC	1 cut(s)	539
BstAUI	TGTACA	1 cut(s)	277
BstDEI	CTNAG	1 cut(s)	299
BstFNI	CGCG	1 cut(s)	416
BstKTI	GATC	1 cut(s)	501
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	1 cut(s)	498
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	226
BstUI	CGCG	1 cut(s)	416
BstV1I	GCAGC	2 cut(s)	297, 539
Cfr13I	GGNCC	1 cut(s)	324
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	2 cut(s)	156, 281
CviJI	RGCY	2 cut(s)	472, 530
CviKI_1	RGCY	2 cut(s)	472, 530
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	1 cut(s)	500
DpnII	GATC	1 cut(s)	498
DraI	TTTAAA	2 cut(s)	129, 490
Eam1104I	CTCTTC	1 cut(s)	539
EarI	CTCTTC	1 cut(s)	539
Eco47I	GGWCC	1 cut(s)	324
FaeI	CATG	2 cut(s)	159, 284
FaiI	YATR	8 cut(s)	56, 157, 239, 282, 335, 483, 485, 508
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	2 cut(s)	155, 280
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	2 cut(s)	311, 528
Fsp4HI	GCNGC	2 cut(s)	311, 528
GluI	GCNGC	2 cut(s)	311, 528
HapII	CCGG	1 cut(s)	227
Hin1II	CATG	2 cut(s)	159, 284
HinfI	GANTC	4 cut(s)	29, 118, 259, 465
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	2 cut(s)	362, 383
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	2 cut(s)	233, 496
HpyAV	CCTTC	1 cut(s)	62
HpyCH4III	ACNGT	2 cut(s)	174, 430
HpyCH4V	TGCA	4 cut(s)	80, 407, 433, 513
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	1 cut(s)	299
Hsp92II	CATG	2 cut(s)	159, 284
Kzo9I	GATC	1 cut(s)	498
LpnPI	CCDG	7 cut(s)	146, 240, 255, 372, 482, 486, 509
Lsp1109I	GCAGC	2 cut(s)	297, 539
LweI	GCATC	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	1 cut(s)	500
MboI	GATC	1 cut(s)	498
MboII	GAAGA	3 cut(s)	77, 433, 556
MluCI	AATT	3 cut(s)	190, 204, 437
MlyI	GAGTC	1 cut(s)	474
MroXI	GAANNNNTTC	2 cut(s)	258, 440
MseI	TTAA	4 cut(s)	93, 128, 186, 489
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	228
MvnI	CGCG	1 cut(s)	416
MwoI	GCNNNNNNNGC	1 cut(s)	413
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	1 cut(s)	498
NlaIII	CATG	2 cut(s)	159, 284
NlaIV	GGNNCC	1 cut(s)	325
NmuCI	GTSAC	1 cut(s)	230
NspI	RCATGY	1 cut(s)	159
PdmI	GAANNNNTTC	2 cut(s)	258, 440
PfeI	GAWTC	3 cut(s)	29, 118, 259
PkrI	GCNGC	2 cut(s)	312, 529
PleI	GAGTC	1 cut(s)	473
PpsI	GAGTC	1 cut(s)	473
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	1 cut(s)	324
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
SaqAI	TTAA	4 cut(s)	93, 128, 186, 489
SatI	GCNGC	2 cut(s)	311, 528
Sau3AI	GATC	1 cut(s)	498
Sau96I	GGNCC	1 cut(s)	324
SchI	GAGTC	1 cut(s)	474
ScrFI	CCNGG	1 cut(s)	228
SetI	ASST	3 cut(s)	90, 186, 532
SfaNI	GCATC	1 cut(s)	83
SinI	GGWCC	1 cut(s)	324
Sse9I	AATT	3 cut(s)	190, 204, 437
SsiI	CCGC	3 cut(s)	38, 348, 416
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	174, 430
TaqI	TCGA	2 cut(s)	121, 168
TasI	AATT	3 cut(s)	190, 204, 437
TatI	WGTACW	1 cut(s)	277
TfiI	GAWTC	3 cut(s)	29, 118, 259
Tru1I	TTAA	4 cut(s)	93, 128, 186, 489
Tru9I	TTAA	4 cut(s)	93, 128, 186, 489
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	2 cut(s)	310, 527
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	216
TspGWI	ACGGA	2 cut(s)	271, 556
VpaK11BI	GGWCC	1 cut(s)	324
XapI	RAATTY	3 cut(s)	190, 204, 437
XceI	RCATGY	1 cut(s)	159
XmnI	GAANNNNTTC	2 cut(s)	258, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.