FvH4_1g15800

Patatin-like phospholipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017577
Physical Location & Seq
Reverse (-)
8988877 .. 8991513
2637 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15800.t1

Sequence Viewer

Length: 1215 bp
ATGGGGAAGGAAGATTCTCTCCGTCAAGAAATTATCCCATCAAGCTATGGTGATAGAATTACTGTTCTAAGCATTGATGGGGGTGGGATTCGAGGCATTATTCCTGGAACCATTTTGAGTTTCCTTGAATCCAAATTACAAGAATTAGATGGAGAAGAAGCACGAATTGCAGACTACTTTGATGTGATTGCAGGAACAAGCACTGGAGGGCTAATAACAACCATGTTGACAGCACCTGATGAGAAAAAGAGACCTCTTTTTGAGGCAAAAGATATAGTCCCGTTCTATCTTAAGCATTGCCCAAGAATATTTCCTCAATCCAGTCGGAGAATTATGAGAATGTTCTCTTTGATTGGACCAAAATATGATGGCAAGTACCTGAGAAAGATGCTTCGTGAGGTACTTGGAGCTCGAAGACTGCATGAAACTGTTACACGAATTGTCATTCCTACTTTTGACATCAAGCTGCTTCAACCCCATGTCTTCTCAACCTTTGAGGCAGAGATCGATGCTTCAGAGGACGCATTGTTATCGGATGTTTGCATCGGTACTTCGTCGGCTCCTACTTATCTTCCAGCTCATTTCTTCAAAACTAGAGACTCAGGAGAAAACGAGAGGGAATTCCATCTTGTTGATGGTGGTGTGGCAGCTAACAATCCTGCATTGCTGACTATGAAGCCAACAGGGATCGTGTTCCCAGAAAATCCAGATGCTCTGGCTGCACCACAAAGCCTAGACTACAGGAAATACCTAGTGCTGTCTCTAGGGACTGGAACTTCAAAGATAGAGAAGAAATACGATGCAAAAATGGCATCAAAGTGGGGGATCATGGGCTGGCTCTACAGAGATGGCCACTCCCCTTTAGTTGATGCTTTCACTTTTGCTAGTGGAGACATGATCGACCTTCACATGTCATTAATATTCAGGTCCATCGAATGTGAGCATAACTACCTTCGTATCCAGGATGACACATTGAGCGGGGACGTGTCGTCGACGGACAAGGCTACAAAGAAGAACTTGAATGATCTTGTGAAGACTGGTGAGGATCTGCTGCAGAAACCTGTTTCCAGGATGAATCTTGACACCGGGATATTTGAGCCTGTGGGAAATGAAGGCACGAATGAGAAAGCCCTCATCAGGTTTGCAAAATTACTATCGGAGGAAAGAAGATTGCGCAAAGCAAGATTCCACCAAGCTAACTCCTCCAATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

405

Amino Acids

45.13

Weight (kDa)

6.34

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Patatin PF01734 23 - 223 2.8e-27 Patatin-like phospholipase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017577)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15800
malus_domestica MD00G1045100.v1.1
prunus_persica Prupe.7G135400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0105081
rosa_laevigata RLG00000017401
rosa_multiflora Rmu_co8510209.1_g000001 Rmu_sc0005160.1_g000009
rosa_roxburghii Rroxscaffold_2G00138440
rosa_rugosa Rorug02G0126200
rosa_samantha Rh2BG185000 Rh2DG183100
rosa_wichuraiana Rw2G013880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1175
AccBSI CCGCTC 1 cut(s) 978
AccI GTMKAC 1 cut(s) 992
AciI CCGC 1 cut(s) 978
AclWI GGATC 3 cut(s) 695, 833, 1053
AcoI YGGCCR 1 cut(s) 850
AcsI RAATTY 1 cut(s) 620
AcuI CTGAAG 1 cut(s) 498
AfaI GTAC 3 cut(s) 377, 402, 550
AfiI CCNNNNNNNGG 1 cut(s) 1137
AflII CTTAAG 1 cut(s) 290
AflIII ACRYGT 2 cut(s) 909, 984
AgsI TTSAA 5 cut(s) 128, 473, 589, 780, 1021
AhdI GACNNNNNGTC 1 cut(s) 988
AjiI CACGTC 1 cut(s) 985
AjnI CCWGG 3 cut(s) 103, 960, 1067
AluBI AGCT 6 cut(s) 45, 410, 466, 578, 650, 1196
AluI AGCT 6 cut(s) 45, 410, 466, 578, 650, 1196
Alw21I GWGCWC 1 cut(s) 412
Alw26I GTCTC 4 cut(s) 244, 591, 765, 885
AlwI GGATC 3 cut(s) 695, 833, 1053
AlwNI CAGNNNCTG 1 cut(s) 236
AoxI GGCC 1 cut(s) 850
ApeKI GCWGC 4 cut(s) 466, 647, 719, 1051
ApoI RAATTY 1 cut(s) 620
AseI ATTAAT 1 cut(s) 917
AspLEI GCGC 1 cut(s) 1176
AspS9I GGNCC 2 cut(s) 356, 927
AsuC2I CCSGG 1 cut(s) 1087
AsuHPI GGTGA 2 cut(s) 62, 1052
AvaII GGWCC 2 cut(s) 356, 927
BaeI ACNNNNGTAYC 2 cut(s) 940, 973
BalI TGGCCA 1 cut(s) 852
BanII GRGCYC 1 cut(s) 412
BbsI GAAGAC 3 cut(s) 421, 475, 1040
Bbv12I GWGCWC 1 cut(s) 412
BbvI GCAGC 4 cut(s) 453, 659, 706, 1038
BccI CCATC 8 cut(s) 46, 71, 143, 362, 629, 633, 842, 938
BcgI CGANNNNNNTGC 2 cut(s) 513, 547
BciT130I CCWGG 3 cut(s) 105, 962, 1069
BciVI GTATCC 1 cut(s) 968
BcnI CCSGG 1 cut(s) 1087
BcoDI GTCTC 4 cut(s) 244, 591, 765, 885
BfaI CTAG 5 cut(s) 594, 734, 752, 764, 885
BfmI CTRYAG 3 cut(s) 739, 841, 1052
BfrI CTTAAG 1 cut(s) 290
BfuI GTATCC 1 cut(s) 968
BisI GCNGC 4 cut(s) 467, 648, 720, 1052
BlsI GCNGC 4 cut(s) 468, 649, 721, 1053
Bme1390I CCNGG 4 cut(s) 105, 962, 1069, 1087
Bme18I GGWCC 2 cut(s) 356, 927
BmeRI GACNNNNNGTC 1 cut(s) 988
BmgBI CACGTC 1 cut(s) 985
BmgT120I GGNCC 2 cut(s) 356, 927
BmiI GGNNCC 2 cut(s) 109, 561
BmrFI CCNGG 4 cut(s) 105, 962, 1069, 1087
BmsI GCATC 7 cut(s) 378, 499, 552, 700, 790, 821, 859
BpiI GAAGAC 3 cut(s) 421, 475, 1040
BpmI CTGGAG 1 cut(s) 225
BpuMI CCSGG 1 cut(s) 1087
Bsa29I ATCGAT 1 cut(s) 507
BsaI GGTCTC 1 cut(s) 244
Bsc4I CCNNNNNNNGG 1 cut(s) 1137
Bse1I ACTGG 4 cut(s) 208, 321, 775, 1042
Bse3DI GCAATG 2 cut(s) 295, 662
BseBI CCWGG 3 cut(s) 105, 962, 1069
BseCI ATCGAT 1 cut(s) 507
BseGI GGATG 3 cut(s) 541, 970, 1077
BseLI CCNNNNNNNGG 1 cut(s) 1137
BseMI GCAATG 2 cut(s) 295, 662
BseMII CTCAG 2 cut(s) 371, 615
BseNI ACTGG 4 cut(s) 208, 321, 775, 1042
BseRI GAGGAG 1 cut(s) 1192
BseXI GCAGC 4 cut(s) 453, 659, 706, 1038
BsgI GTGCAG 1 cut(s) 705
BshFI GGCC 1 cut(s) 852
BshVI ATCGAT 1 cut(s) 507
BsiHKAI GWGCWC 1 cut(s) 412
BsiSI CCGG 1 cut(s) 1086
BslFI GGGAC 3 cut(s) 263, 781, 995
BslI CCNNNNNNNGG 1 cut(s) 1137
BsmAI GTCTC 4 cut(s) 244, 591, 765, 885
BsmFI GGGAC 3 cut(s) 263, 781, 995
BsnI GGCC 1 cut(s) 852
Bso31I GGTCTC 1 cut(s) 244
Bsp1286I GDGCHC 1 cut(s) 412
Bsp143I GATC 6 cut(s) 504, 687, 825, 897, 1024, 1045
BspACI CCGC 1 cut(s) 978
BspANI GGCC 1 cut(s) 852
BspCNI CTCAG 2 cut(s) 372, 614
BspDI ATCGAT 1 cut(s) 507
BspLI GGNNCC 2 cut(s) 109, 561
BspMAI CTGCAG 1 cut(s) 1056
BspPI GGATC 3 cut(s) 695, 833, 1053
BspTI CTTAAG 1 cut(s) 290
BspTNI GGTCTC 1 cut(s) 244
BsrBI CCGCTC 1 cut(s) 978
BsrDI GCAATG 2 cut(s) 295, 662
BsrI ACTGG 4 cut(s) 208, 321, 775, 1042
BssMI GATC 6 cut(s) 504, 687, 825, 897, 1024, 1045
Bst2UI CCWGG 3 cut(s) 105, 962, 1069
Bst4CI ACNGT 2 cut(s) 64, 430
BstAFI CTTAAG 1 cut(s) 290
BstAPI GCANNNNNTGC 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 836
BstDEI CTNAG 3 cut(s) 68, 380, 601
BstF5I GGATG 3 cut(s) 541, 970, 1077
BstHHI GCGC 1 cut(s) 1176
BstKTI GATC 6 cut(s) 507, 690, 828, 900, 1027, 1048
BstMAI GTCTC 4 cut(s) 244, 591, 765, 885
BstMBI GATC 6 cut(s) 504, 687, 825, 897, 1024, 1045
BstMWI GCNNNNNNNGC 3 cut(s) 167, 719, 809
BstNI CCWGG 3 cut(s) 105, 962, 1069
BstNSI RCATGY 1 cut(s) 913
BstSCI CCNGG 4 cut(s) 103, 960, 1067, 1085
BstSFI CTRYAG 3 cut(s) 739, 841, 1052
BstV1I GCAGC 4 cut(s) 453, 659, 706, 1038
BstV2I GAAGAC 3 cut(s) 421, 475, 1040
BstX2I RGATCY 1 cut(s) 1045
BstYI RGATCY 1 cut(s) 1045
Bsu15I ATCGAT 1 cut(s) 507
BsuI GTATCC 1 cut(s) 968
BsuRI GGCC 1 cut(s) 852
BsuTUI ATCGAT 1 cut(s) 507
BtrI CACGTC 1 cut(s) 985
BtsCI GGATG 3 cut(s) 541, 970, 1077
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 836
CaiI CAGNNNCTG 1 cut(s) 236
CfoI GCGC 1 cut(s) 1176
Cfr13I GGNCC 2 cut(s) 356, 927
ClaI ATCGAT 1 cut(s) 507
CseI GACGC 1 cut(s) 530
Csp6I GTAC 3 cut(s) 376, 401, 549
CviAII CATG 6 cut(s) 223, 422, 479, 829, 895, 910
CviQI GTAC 3 cut(s) 376, 401, 549
DdeI CTNAG 3 cut(s) 68, 380, 601
DpnI GATC 6 cut(s) 506, 689, 827, 899, 1026, 1047
DpnII GATC 6 cut(s) 504, 687, 825, 897, 1024, 1045
DriI GACNNNNNGTC 1 cut(s) 988
EaeI YGGCCR 1 cut(s) 850
Eam1105I GACNNNNNGTC 1 cut(s) 988
Ecl136II GAGCTC 1 cut(s) 410
Eco24I GRGCYC 1 cut(s) 412
Eco31I GGTCTC 1 cut(s) 244
Eco47I GGWCC 2 cut(s) 356, 927
Eco53kI GAGCTC 1 cut(s) 410
Eco57I CTGAAG 1 cut(s) 498
EcoICRI GAGCTC 1 cut(s) 410
EcoRI GAATTC 1 cut(s) 620
EcoRII CCWGG 3 cut(s) 103, 960, 1067
EcoT38I GRGCYC 1 cut(s) 412
FaeI CATG 6 cut(s) 226, 425, 482, 832, 898, 913
FalI AAGNNNNNCTT 2 cut(s) 1001, 1033
FaqI GGGAC 3 cut(s) 263, 781, 995
FatI CATG 6 cut(s) 222, 421, 478, 828, 894, 909
FauI CCCGC 1 cut(s) 971
FblI GTMKAC 1 cut(s) 992
Fnu4HI GCNGC 4 cut(s) 467, 648, 720, 1052
FokI GGATG 3 cut(s) 548, 977, 1084
FriOI GRGCYC 1 cut(s) 412
Fsp4HI GCNGC 4 cut(s) 467, 648, 720, 1052
FspBI CTAG 5 cut(s) 594, 734, 752, 764, 885
FspI TGCGCA 1 cut(s) 1175
GlaI GCGC 1 cut(s) 1175
GluI GCNGC 4 cut(s) 467, 648, 720, 1052
GsuI CTGGAG 1 cut(s) 225
HaeIII GGCC 1 cut(s) 852
HapII CCGG 1 cut(s) 1086
HgaI GACGC 1 cut(s) 530
HhaI GCGC 1 cut(s) 1176
Hin1II CATG 6 cut(s) 226, 425, 482, 832, 898, 913
Hin6I GCGC 1 cut(s) 1174
HinP1I GCGC 1 cut(s) 1174
HincII GTYRAC 2 cut(s) 228, 993
HindII GTYRAC 2 cut(s) 228, 993
HinfI GANTC 6 cut(s) 14, 88, 128, 599, 1075, 1185
HpaII CCGG 1 cut(s) 1086
HphI GGTGA 2 cut(s) 62, 1052
Hpy166II GTNNAC 2 cut(s) 228, 993
Hpy188I TCNGA 4 cut(s) 327, 517, 535, 1159
Hpy188III TCNNGA 5 cut(s) 26, 395, 603, 707, 1079
Hpy8I GTNNAC 2 cut(s) 228, 993
Hpy99I CGWCG 3 cut(s) 559, 994, 997
HpyAV CCTTC 3 cut(s) 914, 962, 1106
HpyCH4III ACNGT 2 cut(s) 64, 430
HpyCH4IV ACGT 1 cut(s) 984
HpyCH4V TGCA 9 cut(s) 170, 191, 421, 543, 662, 722, 803, 1054, 1145
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 719, 809
HpyF3I CTNAG 3 cut(s) 68, 380, 601
HpySE526I ACGT 1 cut(s) 984
Hsp92II CATG 6 cut(s) 226, 425, 482, 832, 898, 913
HspAI GCGC 1 cut(s) 1174
Kzo9I GATC 6 cut(s) 504, 687, 825, 897, 1024, 1045
LmnI GCTCC 2 cut(s) 407, 565
Lsp1109I GCAGC 4 cut(s) 453, 659, 706, 1038
LweI GCATC 7 cut(s) 378, 499, 552, 700, 790, 821, 859
MaeI CTAG 5 cut(s) 594, 734, 752, 764, 885
MaeII ACGT 1 cut(s) 984
MaeIII GTNAC 1 cut(s) 430
MalI GATC 6 cut(s) 506, 689, 827, 899, 1026, 1047
MbiI CCGCTC 1 cut(s) 978
MboI GATC 6 cut(s) 504, 687, 825, 897, 1024, 1045
MflI RGATCY 1 cut(s) 1045
MhlI GDGCHC 1 cut(s) 412
MlsI TGGCCA 1 cut(s) 852
MluCI AATT 9 cut(s) 30, 57, 134, 143, 165, 330, 438, 620, 1148
MluNI TGGCCA 1 cut(s) 852
MlyI GAGTC 1 cut(s) 593
MmeI TCCRAC 1 cut(s) 305
Mox20I TGGCCA 1 cut(s) 852
MscI TGGCCA 1 cut(s) 852
MseI TTAA 2 cut(s) 291, 917
MslI CAYNNNNRTG 1 cut(s) 817
Msp20I TGGCCA 1 cut(s) 852
MspCI CTTAAG 1 cut(s) 290
MspI CCGG 1 cut(s) 1086
MspR9I CCNGG 4 cut(s) 105, 962, 1069, 1087
MvaI CCWGG 3 cut(s) 105, 962, 1069
MwoI GCNNNNNNNGC 3 cut(s) 167, 719, 809
NciI CCSGG 1 cut(s) 1087
NdeII GATC 6 cut(s) 504, 687, 825, 897, 1024, 1045
NlaIII CATG 6 cut(s) 226, 425, 482, 832, 898, 913
NlaIV GGNNCC 2 cut(s) 109, 561
NsbI TGCGCA 1 cut(s) 1175
NspI RCATGY 1 cut(s) 913
PciI ACATGT 1 cut(s) 909
PfeI GAWTC 5 cut(s) 14, 88, 128, 1075, 1185
PfoI TCCNGGA 3 cut(s) 103, 960, 1067
PkrI GCNGC 4 cut(s) 468, 649, 721, 1053
PleI GAGTC 1 cut(s) 593
PpsI GAGTC 1 cut(s) 593
PscI ACATGT 1 cut(s) 909
PshBI ATTAAT 1 cut(s) 917
Psp124BI GAGCTC 1 cut(s) 412
Psp6I CCWGG 3 cut(s) 103, 960, 1067
PspGI CCWGG 3 cut(s) 103, 960, 1067
PspN4I GGNNCC 2 cut(s) 109, 561
PspPI GGNCC 2 cut(s) 356, 927
PstI CTGCAG 1 cut(s) 1056
PstNI CAGNNNCTG 1 cut(s) 236
PsuI RGATCY 1 cut(s) 1045
RsaI GTAC 3 cut(s) 377, 402, 550
RsaNI GTAC 3 cut(s) 376, 401, 549
RseI CAYNNNNRTG 1 cut(s) 817
SacI GAGCTC 1 cut(s) 412
SalI GTCGAC 1 cut(s) 991
SaqAI TTAA 2 cut(s) 291, 917
SatI GCNGC 4 cut(s) 467, 648, 720, 1052
Sau3AI GATC 6 cut(s) 504, 687, 825, 897, 1024, 1045
Sau96I GGNCC 2 cut(s) 356, 927
SchI GAGTC 1 cut(s) 593
ScrFI CCNGG 4 cut(s) 105, 962, 1069, 1087
SduI GDGCHC 1 cut(s) 412
SfaNI GCATC 7 cut(s) 378, 499, 552, 700, 790, 821, 859
SfcI CTRYAG 3 cut(s) 739, 841, 1052
SgrDI CGTCGACG 1 cut(s) 991
SinI GGWCC 2 cut(s) 356, 927
SmiMI CAYNNNNRTG 1 cut(s) 817
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 9 cut(s) 30, 57, 134, 143, 165, 330, 438, 620, 1148
SsiI CCGC 1 cut(s) 978
SspI AATATT 3 cut(s) 309, 921, 1210
SspMI CTAG 5 cut(s) 594, 734, 752, 764, 885
SstI GAGCTC 1 cut(s) 412
StyD4I CCNGG 4 cut(s) 103, 960, 1067, 1085
TaaI ACNGT 2 cut(s) 64, 430
TaiI ACGT 1 cut(s) 987
TaqI TCGA 6 cut(s) 91, 412, 507, 900, 933, 992
TasI AATT 9 cut(s) 30, 57, 134, 143, 165, 330, 438, 620, 1148
TfiI GAWTC 5 cut(s) 14, 88, 128, 1075, 1185
Tru1I TTAA 2 cut(s) 291, 917
Tru9I TTAA 2 cut(s) 291, 917
TscAI CASTG 1 cut(s) 208
TseI GCWGC 4 cut(s) 466, 647, 719, 1051
TspDTI ATGAA 4 cut(s) 438, 689, 1088, 1125
TspGWI ACGGA 2 cut(s) 11, 1010
TspRI CASTG 1 cut(s) 208
Vha464I CTTAAG 1 cut(s) 290
VpaK11BI GGWCC 2 cut(s) 356, 927
VspI ATTAAT 1 cut(s) 917
XapI RAATTY 1 cut(s) 620
XceI RCATGY 1 cut(s) 913
XcmI CCANNNNNNNNNTGG 1 cut(s) 632
XmiI GTMKAC 1 cut(s) 992
XspI CTAG 5 cut(s) 594, 734, 752, 764, 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.