Prupe.7G135400_v2.0.a1

Patatin-like phospholipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0017577
Physical Location & Seq
Forward (+)
15283092 .. 15285496
2405 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G135400.1

Sequence Viewer

Length: 1197 bp
ATGTCTCTGCGTGAAGAAATCAACCCATCAAGCTATGGTGATAAAATCACTGTTCTAAGCATTGATGGTGGTGGAATTAGAGGCATCATCCCTGCAACCATATTGACTTTCCTTGAATCCAAATTACAAGAACTGGATGGAGAAGAAGCCCGAATTGCAGATTACTTCGACGTGATCGCAGGAACAAGCACAGGAGGCCTAATAACAGCCATGTTGACAGCACCTGACCAAAACAAACGACCTCTCTATGAGGCCAAAGATATTGTTCCATTCTATCTCAACCATTGCCCCAAAATATTCCCTCAATCCAGTGGACCACTTATGAGAATGAGAGCCTTAAGGGGACCCAAATATGATGGCAAGTATCTCAGAAAGTTGGTTCGCAAAATACTTGGAACTCGAAGACTGCATGAAACTGTAACTCGAATTGTGGTGCCTACATTTGACATCAAATTGCTTCAACCCCATGTCTTCTCAACCTTCGAGGCAGAGATGGAATTTTCTGAGGATGCATTGCTATCAGATATTTGCATCGGTACTTCGTCTGCTCCAACTTATCTCCCAGCTCATCATTTCAAAACTAAAGATTCAGAAGGAAATGAAAGGGAATTCCACCTTGTTGATGGTGGGGTGGCAGCAAACAATCCTGCCTTGCTGGCAATGAAGCCAACAGGGAAAGTGTTCCCAGGCAGTCCAGATGATCTGGCCTCACCACAAAGTCTACAATATGAGAAATACCTTATGCTCTCACTGGGCACAGGGACTTCAAAGATGGAGAAAAAATACAACGCAAAAATGGCAGCAAAGTGGGGGATTTTGGGCTGGCTTTATAAGGATGGCCATTGCCCTTTAGTTGATGCCTTCACATTTGCTAGCGGAGACATGGTCGACCTTCACATGTCCTTGATTTTCAGGTCTGTCAAATGCGAGCACAACTACCTTCGCATTCAGGATGACACATTAAGTGGGAACACATCATCGACAGACAAGGCAACAAAGGAGAACATGAGGGAGCTAATAAAGACTGGTGAGAGTCTGTTGCAGAAGCCTGCTTCAAGGATGAATCTTGATACAGGGATATTTGAACCAGCTCACAATGGAGCCACCAATCAAGAAGTCCTCACTAGATTTGCTCAAAAACTATCCGAGGAGAGAAGACTGCGAAAGGAACGATTACATCAGTGGTCCTCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

399

Amino Acids

44.46

Weight (kDa)

7.7

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017577)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15800
malus_domestica MD00G1045100.v1.1
prunus_persica Prupe.7G135400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0105081
rosa_laevigata RLG00000017401
rosa_multiflora Rmu_co8510209.1_g000001 Rmu_sc0005160.1_g000009
rosa_roxburghii Rroxscaffold_2G00138440
rosa_rugosa Rorug02G0126200
rosa_samantha Rh2BG185000 Rh2DG183100
rosa_wichuraiana Rw2G013880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 831
AccB1I GGYRCC 1 cut(s) 433
AccI GTMKAC 2 cut(s) 721, 888
AciI CCGC 1 cut(s) 876
AcoI YGGCCR 1 cut(s) 838
AcsI RAATTY 2 cut(s) 497, 608
AfaI GTAC 1 cut(s) 538
AflII CTTAAG 1 cut(s) 337
AflIII ACRYGT 1 cut(s) 897
AgsI TTSAA 6 cut(s) 116, 461, 577, 768, 1056, 1085
AjiI CACGTC 1 cut(s) 172
AjnI CCWGG 1 cut(s) 685
AluBI AGCT 4 cut(s) 33, 566, 1015, 1091
AluI AGCT 4 cut(s) 33, 566, 1015, 1091
Alw21I GWGCWC 1 cut(s) 933
Alw26I GTCTC 2 cut(s) 9, 873
AlwNI CAGNNNCTG 1 cut(s) 224
AoxI GGCC 4 cut(s) 196, 252, 705, 838
ApeKI GCWGC 2 cut(s) 635, 800
ApoI RAATTY 2 cut(s) 497, 608
Asp700I GAANNNNTTC 1 cut(s) 680
AspS9I GGNCC 3 cut(s) 314, 344, 1185
AsuHPI GGTGA 3 cut(s) 50, 702, 1040
AsuNHI GCTAGC 1 cut(s) 872
AvaII GGWCC 3 cut(s) 314, 344, 1185
BaeGI GKGCMC 1 cut(s) 758
BalI TGGCCA 1 cut(s) 840
BanI GGYRCC 1 cut(s) 433
BbsI GAAGAC 3 cut(s) 409, 463, 1162
Bbv12I GWGCWC 1 cut(s) 933
BbvI GCAGC 2 cut(s) 647, 812
BccI CCATC 8 cut(s) 34, 59, 131, 350, 487, 617, 766, 830
BciT130I CCWGG 1 cut(s) 687
BcoDI GTCTC 2 cut(s) 9, 873
BfaI CTAG 2 cut(s) 873, 1125
BfrI CTTAAG 1 cut(s) 337
BglI GCCNNNNNGGC 1 cut(s) 656
BisI GCNGC 2 cut(s) 636, 801
BlsI GCNGC 2 cut(s) 637, 802
Bme1390I CCNGG 1 cut(s) 687
Bme18I GGWCC 3 cut(s) 314, 344, 1185
BmgBI CACGTC 1 cut(s) 172
BmgT120I GGNCC 3 cut(s) 314, 344, 1185
BmiI GGNNCC 4 cut(s) 345, 346, 435, 1102
BmrFI CCNGG 1 cut(s) 687
BmrI ACTGGG 1 cut(s) 761
BmsI GCATC 4 cut(s) 93, 499, 540, 847
BmtI GCTAGC 1 cut(s) 876
BmuI ACTGGG 1 cut(s) 761
BpiI GAAGAC 3 cut(s) 409, 463, 1162
BsaJI CCNNGG 2 cut(s) 685, 1146
BsaXI ACNNNNNCTCC 2 cut(s) 870, 900
Bse1I ACTGG 4 cut(s) 138, 309, 756, 1030
Bse3DI GCAATG 4 cut(s) 283, 512, 666, 841
BseBI CCWGG 1 cut(s) 687
BseDI CCNNGG 2 cut(s) 685, 1146
BseGI GGATG 6 cut(s) 87, 142, 514, 841, 958, 1065
BseMI GCAATG 4 cut(s) 283, 512, 666, 841
BseMII CTCAG 2 cut(s) 382, 495
BseNI ACTGG 4 cut(s) 138, 309, 756, 1030
BseRI GAGGAG 1 cut(s) 1163
BseSI GKGCMC 1 cut(s) 758
BseXI GCAGC 2 cut(s) 647, 812
BseYI CCCAGC 1 cut(s) 562
BshFI GGCC 4 cut(s) 198, 254, 707, 840
BshNI GGYRCC 1 cut(s) 433
BsiHKAI GWGCWC 1 cut(s) 933
BslFI GGGAC 2 cut(s) 357, 775
BsmAI GTCTC 2 cut(s) 9, 873
BsmFI GGGAC 2 cut(s) 357, 775
BsmI GAATGC 1 cut(s) 945
BsnI GGCC 4 cut(s) 198, 254, 707, 840
Bsp1286I GDGCHC 2 cut(s) 758, 933
Bsp143I GATC 2 cut(s) 174, 700
BspACI CCGC 1 cut(s) 876
BspANI GGCC 4 cut(s) 198, 254, 707, 840
BspCNI CTCAG 2 cut(s) 381, 496
BspLI GGNNCC 4 cut(s) 345, 346, 435, 1102
BspOI GCTAGC 1 cut(s) 876
BspT107I GGYRCC 1 cut(s) 433
BspTI CTTAAG 1 cut(s) 337
BsrDI GCAATG 4 cut(s) 283, 512, 666, 841
BsrI ACTGG 4 cut(s) 138, 309, 756, 1030
BssECI CCNNGG 2 cut(s) 685, 1146
BssMI GATC 2 cut(s) 174, 700
Bst2UI CCWGG 1 cut(s) 687
Bst4CI ACNGT 2 cut(s) 52, 418
BstAFI CTTAAG 1 cut(s) 337
BstC8I GCNNGC 5 cut(s) 657, 824, 874, 929, 1050
BstDEI CTNAG 3 cut(s) 56, 368, 504
BstF5I GGATG 6 cut(s) 87, 142, 514, 841, 958, 1065
BstKTI GATC 2 cut(s) 177, 703
BstMAI GTCTC 2 cut(s) 9, 873
BstMBI GATC 2 cut(s) 174, 700
BstMWI GCNNNNNNNGC 4 cut(s) 155, 195, 656, 797
BstNI CCWGG 1 cut(s) 687
BstNSI RCATGY 1 cut(s) 901
BstSCI CCNGG 1 cut(s) 685
BstSLI GKGCMC 1 cut(s) 758
BstV1I GCAGC 2 cut(s) 647, 812
BstV2I GAAGAC 3 cut(s) 409, 463, 1162
BsuRI GGCC 4 cut(s) 198, 254, 707, 840
BtrI CACGTC 1 cut(s) 172
BtsCI GGATG 6 cut(s) 87, 142, 514, 841, 958, 1065
BtsIMutI CAGTG 4 cut(s) 48, 316, 749, 1187
Cac8I GCNNGC 5 cut(s) 657, 824, 874, 929, 1050
CaiI CAGNNNCTG 1 cut(s) 224
Cfr13I GGNCC 3 cut(s) 314, 344, 1185
Csp6I GTAC 1 cut(s) 537
CviAII CATG 6 cut(s) 211, 410, 467, 883, 898, 1006
CviQI GTAC 1 cut(s) 537
DdeI CTNAG 3 cut(s) 56, 368, 504
DpnI GATC 2 cut(s) 176, 702
DpnII GATC 2 cut(s) 174, 700
EaeI YGGCCR 1 cut(s) 838
Eco147I AGGCCT 1 cut(s) 198
Eco47I GGWCC 3 cut(s) 314, 344, 1185
EcoO109I RGGNCCY 1 cut(s) 344
EcoRI GAATTC 1 cut(s) 608
EcoRII CCWGG 1 cut(s) 685
EcoT22I ATGCAT 1 cut(s) 514
FaeI CATG 6 cut(s) 214, 413, 470, 886, 901, 1009
FaqI GGGAC 2 cut(s) 357, 775
FatI CATG 6 cut(s) 210, 409, 466, 882, 897, 1005
FblI GTMKAC 2 cut(s) 721, 888
Fnu4HI GCNGC 2 cut(s) 636, 801
FokI GGATG 6 cut(s) 74, 149, 521, 848, 965, 1072
Fsp4HI GCNGC 2 cut(s) 636, 801
FspBI CTAG 2 cut(s) 873, 1125
GluI GCNGC 2 cut(s) 636, 801
GsaI CCCAGC 1 cut(s) 566
HaeIII GGCC 4 cut(s) 198, 254, 707, 840
Hin1II CATG 6 cut(s) 214, 413, 470, 886, 901, 1009
HincII GTYRAC 2 cut(s) 216, 889
HindII GTYRAC 2 cut(s) 216, 889
HinfI GANTC 4 cut(s) 116, 587, 1033, 1063
HphI GGTGA 3 cut(s) 50, 702, 1040
Hpy166II GTNNAC 4 cut(s) 216, 314, 722, 889
Hpy188I TCNGA 5 cut(s) 371, 505, 523, 592, 1147
Hpy188III TCNNGA 4 cut(s) 695, 950, 1067, 1112
Hpy8I GTNNAC 4 cut(s) 216, 314, 722, 889
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 5 cut(s) 490, 587, 871, 902, 950
HpyCH4III ACNGT 2 cut(s) 52, 418
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 6 cut(s) 95, 158, 409, 512, 531, 1042
HpyF10VI GCNNNNNNNGC 4 cut(s) 155, 195, 656, 797
HpyF3I CTNAG 3 cut(s) 56, 368, 504
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 6 cut(s) 214, 413, 470, 886, 901, 1009
KflI GGGWCCC 1 cut(s) 344
Kzo9I GATC 2 cut(s) 174, 700
LmnI GCTCC 3 cut(s) 553, 1012, 1100
Lsp1109I GCAGC 2 cut(s) 647, 812
LweI GCATC 4 cut(s) 93, 499, 540, 847
MaeI CTAG 2 cut(s) 873, 1125
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 418
MalI GATC 2 cut(s) 176, 702
MboI GATC 2 cut(s) 174, 700
MboII GAAGA 5 cut(s) 26, 155, 414, 463, 1167
MhlI GDGCHC 2 cut(s) 758, 933
MlsI TGGCCA 1 cut(s) 840
MluCI AATT 7 cut(s) 75, 122, 153, 426, 452, 497, 608
MluNI TGGCCA 1 cut(s) 840
MlyI GAGTC 1 cut(s) 1042
MmeI TCCRAC 1 cut(s) 575
Mox20I TGGCCA 1 cut(s) 840
Mph1103I ATGCAT 1 cut(s) 514
MroXI GAANNNNTTC 1 cut(s) 680
MscI TGGCCA 1 cut(s) 840
MseI TTAA 2 cut(s) 338, 962
Msp20I TGGCCA 1 cut(s) 840
MspCI CTTAAG 1 cut(s) 337
MspR9I CCNGG 1 cut(s) 687
Mva1269I GAATGC 1 cut(s) 945
MvaI CCWGG 1 cut(s) 687
MwoI GCNNNNNNNGC 4 cut(s) 155, 195, 656, 797
NdeII GATC 2 cut(s) 174, 700
NheI GCTAGC 1 cut(s) 872
NlaIII CATG 6 cut(s) 214, 413, 470, 886, 901, 1009
NlaIV GGNNCC 4 cut(s) 345, 346, 435, 1102
NsiI ATGCAT 1 cut(s) 514
NspI RCATGY 1 cut(s) 901
PceI AGGCCT 1 cut(s) 198
PciI ACATGT 1 cut(s) 897
PctI GAATGC 1 cut(s) 945
PdmI GAANNNNTTC 1 cut(s) 680
PfeI GAWTC 3 cut(s) 116, 587, 1063
PflFI GACNNNGTC 1 cut(s) 884
PkrI GCNGC 2 cut(s) 637, 802
PleI GAGTC 1 cut(s) 1041
PpsI GAGTC 1 cut(s) 1041
PpuMI RGGWCCY 1 cut(s) 344
PscI ACATGT 1 cut(s) 897
PsiI TTATAA 1 cut(s) 831
Psp5II RGGWCCY 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 685
PspFI CCCAGC 1 cut(s) 562
PspGI CCWGG 1 cut(s) 685
PspN4I GGNNCC 4 cut(s) 345, 346, 435, 1102
PspPI GGNCC 3 cut(s) 314, 344, 1185
PspPPI RGGWCCY 1 cut(s) 344
PstNI CAGNNNCTG 1 cut(s) 224
PsyI GACNNNGTC 1 cut(s) 884
RsaI GTAC 1 cut(s) 538
RsaNI GTAC 1 cut(s) 537
SalI GTCGAC 1 cut(s) 887
SaqAI TTAA 2 cut(s) 338, 962
SatI GCNGC 2 cut(s) 636, 801
Sau3AI GATC 2 cut(s) 174, 700
Sau96I GGNCC 3 cut(s) 314, 344, 1185
SchI GAGTC 1 cut(s) 1042
ScrFI CCNGG 1 cut(s) 687
SduI GDGCHC 2 cut(s) 758, 933
SfaNI GCATC 4 cut(s) 93, 499, 540, 847
SinI GGWCC 3 cut(s) 314, 344, 1185
SmlI CTYRAG 1 cut(s) 337
SmoI CTYRAG 1 cut(s) 337
Sse9I AATT 7 cut(s) 75, 122, 153, 426, 452, 497, 608
SseBI AGGCCT 1 cut(s) 198
SsiI CCGC 1 cut(s) 876
SspI AATATT 1 cut(s) 297
SspMI CTAG 2 cut(s) 873, 1125
StuI AGGCCT 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 685
TaaI ACNGT 2 cut(s) 52, 418
TaiI ACGT 1 cut(s) 174
TaqI TCGA 6 cut(s) 168, 400, 424, 483, 888, 980
TasI AATT 7 cut(s) 75, 122, 153, 426, 452, 497, 608
TfiI GAWTC 3 cut(s) 116, 587, 1063
Tru1I TTAA 2 cut(s) 338, 962
Tru9I TTAA 2 cut(s) 338, 962
TscAI CASTG 4 cut(s) 55, 316, 756, 1187
TseI GCWGC 2 cut(s) 635, 800
TspDTI ATGAA 4 cut(s) 426, 615, 677, 1076
TspRI CASTG 4 cut(s) 55, 316, 756, 1187
Tth111I GACNNNGTC 1 cut(s) 884
Vha464I CTTAAG 1 cut(s) 337
VpaK11BI GGWCC 3 cut(s) 314, 344, 1185
XapI RAATTY 2 cut(s) 497, 608
XceI RCATGY 1 cut(s) 901
XcmI CCANNNNNNNNNTGG 1 cut(s) 620
XmiI GTMKAC 2 cut(s) 721, 888
XmnI GAANNNNTTC 1 cut(s) 680
XspI CTAG 2 cut(s) 873, 1125
Zsp2I ATGCAT 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.